RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 RBM3P98179 157 aaKnown RBP4.91□□□□□ -1.62
VPS35-206ENST00000565228 Q6ZQT0 140 aa4.91□□□□□ -1.62
VPS35-206ENST00000565228 RPL37P61927 97 aaKnown RBP4.9□□□□□ -1.63
VPS35-206ENST00000565228 TRBV20-1A0A075B6N2 111 aa4.89□□□□□ -1.63
VPS35-206ENST00000565228 PCP4L1A6NKN8 68 aa4.89□□□□□ -1.63
VPS35-206ENST00000565228 KRTAP16-1A8MUX0 517 aa4.89□□□□□ -1.63
VPS35-206ENST00000565228 SEC61BP60468 96 aaKnown RBP4.89□□□□□ -1.63
VPS35-206ENST00000565228 DSCR10P59022 87 aa4.88□□□□□ -1.63
VPS35-206ENST00000565228 VPS25Q9BRG1 176 aa4.88□□□□□ -1.63
VPS35-206ENST00000565228 C14orf132Q9NPU4 83 aa4.88□□□□□ -1.63
VPS35-206ENST00000565228 SS18L2Q9UHA2 77 aa4.88□□□□□ -1.63
VPS35-206ENST00000565228 PRO0461Q9UI25 63 aa4.88□□□□□ -1.63
VPS35-206ENST00000565228 LOC110117498A0A087WWA1 95 aa4.87□□□□□ -1.63
VPS35-206ENST00000565228 KRTAP4-9Q9BYQ8 210 aa4.87□□□□□ -1.63
VPS35-206ENST00000565228 FLGP20930 4061 aaPredicted RBP4.87□□□□□ -1.63
VPS35-206ENST00000565228 IGKV4-1P06312 121 aa4.86□□□□□ -1.63
VPS35-206ENST00000565228 DSCR8Q96T75 97 aa4.86□□□□□ -1.63
VPS35-206ENST00000565228 SPCS1Q9Y6A9 102 aa4.86□□□□□ -1.63
VPS35-206ENST00000565228 KRTAP19-4Q3LI73 84 aa4.85□□□□□ -1.63
VPS35-206ENST00000565228 COL5A1-AS1Q5SY13 56 aa4.85□□□□□ -1.63
VPS35-206ENST00000565228 LCE4AQ5TA78 99 aa4.85□□□□□ -1.63
VPS35-206ENST00000565228 C20orf166-AS1Q96NR2 134 aa4.85□□□□□ -1.63
VPS35-206ENST00000565228 A8MUU9 505 aa4.84□□□□□ -1.63
VPS35-206ENST00000565228 JMJD7-PLA2G4BH0Y9G9 81 aa4.84□□□□□ -1.63
VPS35-206ENST00000565228 H3BT86 120 aa4.84□□□□□ -1.63
VPS35-206ENST00000565228 LYRM7Q5U5X0 104 aa4.84□□□□□ -1.63
VPS35-206ENST00000565228 Q75L30 129 aa4.84□□□□□ -1.63
VPS35-206ENST00000565228 SIGMAR1Q99720 223 aa4.84□□□□□ -1.63
VPS35-206ENST00000565228 K7EP34 96 aa4.83□□□□□ -1.64
VPS35-206ENST00000565228 IGHV6-1A0A0B4J1U7 121 aa4.79□□□□□ -1.64
VPS35-206ENST00000565228 LINC00313P59037 77 aa4.79□□□□□ -1.64
VPS35-206ENST00000565228 IGKV3D-7A0A0C4DH55 119 aa4.78□□□□□ -1.64
VPS35-206ENST00000565228 A0A1B0GVX0 72 aa4.78□□□□□ -1.64
VPS35-206ENST00000565228 MT1HP80294 61 aa4.77□□□□□ -1.65
VPS35-206ENST00000565228 KRTAP4-2Q9BYR5 136 aa4.77□□□□□ -1.65
VPS35-206ENST00000565228 KRTAP9-7A8MTY7 169 aa4.76□□□□□ -1.65
VPS35-206ENST00000565228 H3BS24 57 aa4.76□□□□□ -1.65
VPS35-206ENST00000565228 PDE6GP18545 87 aa4.76□□□□□ -1.65
VPS35-206ENST00000565228 A0A1B0GW54 56 aa4.74□□□□□ -1.65
VPS35-206ENST00000565228 A8MWP4 228 aa4.74□□□□□ -1.65
VPS35-206ENST00000565228 ATP11AUNQ6ZP68 121 aa4.73□□□□□ -1.65
VPS35-206ENST00000565228 C8orf17Q9NRJ1 99 aa4.73□□□□□ -1.65
VPS35-206ENST00000565228 MMP24-AS1A0A0U1RRL7 71 aa4.72□□□□□ -1.65
VPS35-206ENST00000565228 C8orf87E5RJ46 101 aa4.72□□□□□ -1.65
VPS35-206ENST00000565228 J3KT08 172 aa4.72□□□□□ -1.65
VPS35-206ENST00000565228 K7EQZ3 153 aa4.72□□□□□ -1.65
VPS35-206ENST00000565228 NREPQ16612 68 aa4.72□□□□□ -1.65
VPS35-206ENST00000565228 Q6ZVQ6 151 aa4.72□□□□□ -1.65
VPS35-206ENST00000565228 PRR15Q8IV56 129 aa4.72□□□□□ -1.65
VPS35-206ENST00000565228 LINC00846Q9NV44 126 aa4.72□□□□□ -1.65
VPS35-206ENST00000565228 Q8N9L7 120 aa4.71□□□□□ -1.66
VPS35-206ENST00000565228 Q8N9P0 234 aaPredicted RBP4.71□□□□□ -1.66
VPS35-206ENST00000565228 HRES1P13985 223 aa4.7□□□□□ -1.66
VPS35-206ENST00000565228 C21orf62-AS1Q17RA5 79 aa4.7□□□□□ -1.66
VPS35-206ENST00000565228 ETDBQ3ZM63 59 aa4.7□□□□□ -1.66
VPS35-206ENST00000565228 KRTAP4-11Q9BYQ6 195 aa4.7□□□□□ -1.66
VPS35-206ENST00000565228 F8W1H4 67 aa4.68□□□□□ -1.66
VPS35-206ENST00000565228 BPY2O14599 106 aa4.68□□□□□ -1.66
VPS35-206ENST00000565228 GTF2H5Q6ZYL4 71 aa4.68□□□□□ -1.66
VPS35-206ENST00000565228 MPLKIPQ8TAP9 179 aa4.68□□□□□ -1.66
VPS35-206ENST00000565228 A0A1B0GV90 55 aa4.67□□□□□ -1.66
VPS35-206ENST00000565228 ZCCHC13Q8WW36 166 aaKnown RBP4.66□□□□□ -1.66
VPS35-206ENST00000565228 NDUFB1O75438 58 aa4.65□□□□□ -1.67
VPS35-206ENST00000565228 KRTAP10-6P60371 365 aaPredicted RBP4.65□□□□□ -1.67
VPS35-206ENST00000565228 LCE5AQ5TCM9 118 aa4.64□□□□□ -1.67
VPS35-206ENST00000565228 TMEM254Q8TBM7 123 aa4.64□□□□□ -1.67
VPS35-206ENST00000565228 Q5W150 140 aa4.63□□□□□ -1.67
VPS35-206ENST00000565228 MRPL34Q9BQ48 92 aaKnown RBP4.63□□□□□ -1.67
VPS35-206ENST00000565228 hDV103S1A0JD37 113 aa4.62□□□□□ -1.67
VPS35-206ENST00000565228 WFDC13Q8IUB5 93 aa4.62□□□□□ -1.67
VPS35-206ENST00000565228 SPINK7P58062 85 aa4.61□□□□□ -1.67
VPS35-206ENST00000565228 COX6B2Q6YFQ2 88 aa4.61□□□□□ -1.67
VPS35-206ENST00000565228 SSPOA2VEC9 5147 aa4.6□□□□□ -1.67
VPS35-206ENST00000565228 USH2AO75445 5202 aa4.59□□□□□ -1.67
VPS35-206ENST00000565228 KRTAP9-3Q9BYQ3 159 aa4.58□□□□□ -1.68
VPS35-206ENST00000565228 UBL5Q9BZL1 73 aa4.58□□□□□ -1.68
VPS35-206ENST00000565228 CASC2Q6XLA1 102 aa4.57□□□□□ -1.68
VPS35-206ENST00000565228 KRTAP9-8Q9BYQ0 159 aa4.56□□□□□ -1.68
VPS35-206ENST00000565228 FCGBPQ9Y6R7 5405 aaPredicted RBP4.55□□□□□ -1.68
VPS35-206ENST00000565228 HCG22E2RYF7 251 aa4.55□□□□□ -1.68
VPS35-206ENST00000565228 SYNE2Q8WXH0 6885 aaKnown RBP4.55□□□□□ -1.68
VPS35-206ENST00000565228 M0R2T5 61 aa4.54□□□□□ -1.68
VPS35-206ENST00000565228 NDUFS5O43920 106 aa4.54□□□□□ -1.68
VPS35-206ENST00000565228 CXCL6P80162 114 aa4.53□□□□□ -1.68
VPS35-206ENST00000565228 FAM240AA0A1B0GVK7 77 aa4.52□□□□□ -1.69
VPS35-206ENST00000565228 MACF1Q9UPN3 7388 aaKnown RBP4.52□□□□□ -1.69
VPS35-206ENST00000565228 IGKV2D-30A0A075B6S6 120 aa4.49□□□□□ -1.69
VPS35-206ENST00000565228 FAM236DA0A1B0GTK5 79 aa4.49□□□□□ -1.69
VPS35-206ENST00000565228 MT2AP02795 61 aa4.49□□□□□ -1.69
VPS35-206ENST00000565228 IGKV2-30P06310 120 aa4.49□□□□□ -1.69
VPS35-206ENST00000565228 FAM236CP0DP71 79 aa4.49□□□□□ -1.69
VPS35-206ENST00000565228 RBM12B-AS1Q9P1G2 102 aa4.49□□□□□ -1.69
VPS35-206ENST00000565228 MT1FP04733 61 aa4.48□□□□□ -1.69
VPS35-206ENST00000565228 ACYP1P07311 99 aa4.48□□□□□ -1.69
VPS35-206ENST00000565228 KRTAP3-1Q9BYR8 98 aa4.48□□□□□ -1.69
VPS35-206ENST00000565228 A0A087WVE0 104 aa4.47□□□□□ -1.69
VPS35-206ENST00000565228 C7orf65Q6ZTY9 151 aa4.45□□□□□ -1.7
VPS35-206ENST00000565228 C4orf26Q17RF5 130 aa4.44□□□□□ -1.7
VPS35-206ENST00000565228 LINC00643Q86TS7 51 aa4.43□□□□□ -1.7
VPS35-206ENST00000565228 ATP5EP2Q5VTU8 51 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms