RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 SPAG11AQ6PDA7 123 aa7.41□□□□□ -1.22
SNX1-211ENST00000560829 EPPK1P58107 5090 aaKnown RBP7.4□□□□□ -1.22
SNX1-211ENST00000560829 C20orf197Q8N268 126 aa7.4□□□□□ -1.23
SNX1-211ENST00000560829 IGHV6-1A0A0B4J1U7 121 aa7.39□□□□□ -1.23
SNX1-211ENST00000560829 hDV103S1A0JD37 113 aa7.39□□□□□ -1.23
SNX1-211ENST00000560829 LINC00304Q8N9R0 145 aa7.39□□□□□ -1.23
SNX1-211ENST00000560829 KLKP1Q107X0 134 aa7.38□□□□□ -1.23
SNX1-211ENST00000560829 Q5VSD8 79 aa7.38□□□□□ -1.23
SNX1-211ENST00000560829 CYSTM1Q9H1C7 97 aa7.37□□□□□ -1.23
SNX1-211ENST00000560829 KIAA1109Q2LD37 5005 aa7.36□□□□□ -1.23
SNX1-211ENST00000560829 TMEM254Q8TBM7 123 aa7.36□□□□□ -1.23
SNX1-211ENST00000560829 C8orf87E5RJ46 101 aa7.34□□□□□ -1.23
SNX1-211ENST00000560829 A0A0U1RQV1 116 aa7.34□□□□□ -1.23
SNX1-211ENST00000560829 C5orf47Q569G3 176 aa7.34□□□□□ -1.23
SNX1-211ENST00000560829 NOTCH2NLQ7Z3S9 236 aa7.34□□□□□ -1.23
SNX1-211ENST00000560829 MRPL34Q9BQ48 92 aaKnown RBP7.32□□□□□ -1.24
SNX1-211ENST00000560829 SNURFQ9Y675 71 aa7.32□□□□□ -1.24
SNX1-211ENST00000560829 KRTAP17-1Q9BYP8 105 aa7.3□□□□□ -1.24
SNX1-211ENST00000560829 TP53AIP1Q9HCN2 124 aa7.3□□□□□ -1.24
SNX1-211ENST00000560829 TNXBP22105 4242 aa7.3□□□□□ -1.24
SNX1-211ENST00000560829 NDUFC1O43677 76 aa7.3□□□□□ -1.24
SNX1-211ENST00000560829 FAT3Q8TDW7 4589 aa7.29□□□□□ -1.24
SNX1-211ENST00000560829 H7BZZ5 65 aa7.29□□□□□ -1.24
SNX1-211ENST00000560829 Q8N1X5 172 aa7.29□□□□□ -1.24
SNX1-211ENST00000560829 LINC00313P59037 77 aa7.28□□□□□ -1.24
SNX1-211ENST00000560829 TMEM258P61165 79 aa7.28□□□□□ -1.24
SNX1-211ENST00000560829 ZCCHC13Q8WW36 166 aaKnown RBP7.28□□□□□ -1.24
SNX1-211ENST00000560829 LRP1Q07954 4544 aaKnown RBP7.28□□□□□ -1.24
SNX1-211ENST00000560829 KRTAP10-8P60410 259 aa7.28□□□□□ -1.24
SNX1-211ENST00000560829 H3BPC8 53 aa7.26□□□□□ -1.25
SNX1-211ENST00000560829 MP68P56378 58 aa7.26□□□□□ -1.25
SNX1-211ENST00000560829 TRAV22A0A0B4J277 110 aa7.24□□□□□ -1.25
SNX1-211ENST00000560829 H0Y9P7 68 aa7.24□□□□□ -1.25
SNX1-211ENST00000560829 KRTAP16-1A8MUX0 517 aa7.24□□□□□ -1.25
SNX1-211ENST00000560829 Q8N9P0 234 aaPredicted RBP7.24□□□□□ -1.25
SNX1-211ENST00000560829 NDUFS5O43920 106 aa7.23□□□□□ -1.25
SNX1-211ENST00000560829 LINC00208Q96KT6 92 aa7.21□□□□□ -1.26
SNX1-211ENST00000560829 LCE2DQ5TA82 110 aaPredicted RBP7.19□□□□□ -1.26
SNX1-211ENST00000560829 FAM236DA0A1B0GTK5 79 aa7.18□□□□□ -1.26
SNX1-211ENST00000560829 FAM236CP0DP71 79 aa7.18□□□□□ -1.26
SNX1-211ENST00000560829 KRTAP13-3Q3SY46 172 aa7.18□□□□□ -1.26
SNX1-211ENST00000560829 C1orf64Q8NEQ6 169 aa7.17□□□□□ -1.26
SNX1-211ENST00000560829 ATP5EP56381 51 aaPredicted RBP7.16□□□□□ -1.26
SNX1-211ENST00000560829 MYCBP2O75592 4640 aa7.16□□□□□ -1.26
SNX1-211ENST00000560829 Q5W150 140 aa7.15□□□□□ -1.27
SNX1-211ENST00000560829 MT1HL1P0DM35 61 aa7.14□□□□□ -1.27
SNX1-211ENST00000560829 FLG2Q5D862 2391 aaPredicted RBP7.13□□□□□ -1.27
SNX1-211ENST00000560829 RETNLBQ9BQ08 111 aa7.13□□□□□ -1.27
SNX1-211ENST00000560829 BIRC6Q9NR09 4857 aa7.12□□□□□ -1.27
SNX1-211ENST00000560829 LOC101927531A0A1B0GV80 90 aa7.11□□□□□ -1.27
SNX1-211ENST00000560829 RPS28P62857 69 aaKnown RBP7.11□□□□□ -1.27
SNX1-211ENST00000560829 OXTP01178 125 aa7.1□□□□□ -1.27
SNX1-211ENST00000560829 FP248Q71RG6 208 aaPredicted RBP7.09□□□□□ -1.27
SNX1-211ENST00000560829 SPANXA2-OT1Q8N9U9 137 aa7.09□□□□□ -1.28
SNX1-211ENST00000560829 C20orf166-AS1Q96NR2 134 aa7.07□□□□□ -1.28
SNX1-211ENST00000560829 HERC2O95714 4834 aa7.07□□□□□ -1.28
SNX1-211ENST00000560829 C9orf92A6NGG3 77 aa7.06□□□□□ -1.28
SNX1-211ENST00000560829 A8MUU9 505 aa7.06□□□□□ -1.28
SNX1-211ENST00000560829 KRTAP4-5Q9BYR2 181 aa7.06□□□□□ -1.28
SNX1-211ENST00000560829 CYP4F30PQ9H0H9 118 aa7.06□□□□□ -1.28
SNX1-211ENST00000560829 SERP1Q9Y6X1 66 aa7.06□□□□□ -1.28
SNX1-211ENST00000560829 ABCA13Q86UQ4 5058 aa7.03□□□□□ -1.28
SNX1-211ENST00000560829 IGLV7-46A0A075B6I9 117 aa7.02□□□□□ -1.28
SNX1-211ENST00000560829 IGKV2-30P06310 120 aa7.02□□□□□ -1.28
SNX1-211ENST00000560829 PCOTHQ58A44 107 aa7.02□□□□□ -1.28
SNX1-211ENST00000560829 Q75L30 129 aa6.99□□□□□ -1.29
SNX1-211ENST00000560829 SVIPQ8NHG7 77 aa6.99□□□□□ -1.29
SNX1-211ENST00000560829 PRR4Q16378 134 aa6.98□□□□□ -1.29
SNX1-211ENST00000560829 DMBT1Q9UGM3 2413 aaPredicted RBP6.96□□□□□ -1.29
SNX1-211ENST00000560829 IGKV2D-30A0A075B6S6 120 aa6.93□□□□□ -1.3
SNX1-211ENST00000560829 HRES1P13985 223 aa6.93□□□□□ -1.3
SNX1-211ENST00000560829 C7orf65Q6ZTY9 151 aa6.92□□□□□ -1.3
SNX1-211ENST00000560829 XP32Q5T750 250 aa6.9□□□□□ -1.3
SNX1-211ENST00000560829 RPL37P61927 97 aaKnown RBP6.9□□□□□ -1.31
SNX1-211ENST00000560829 SMIM26A0A096LP01 95 aa6.88□□□□□ -1.31
SNX1-211ENST00000560829 TPRXLQ17RH7 258 aa6.87□□□□□ -1.31
SNX1-211ENST00000560829 DMAC1Q96GE9 116 aa6.86□□□□□ -1.31
SNX1-211ENST00000560829 ATP11AUNQ6ZP68 121 aa6.85□□□□□ -1.31
SNX1-211ENST00000560829 COA5Q86WW8 74 aa6.85□□□□□ -1.31
SNX1-211ENST00000560829 J3QL48 77 aa6.83□□□□□ -1.32
SNX1-211ENST00000560829 SPINK7P58062 85 aa6.83□□□□□ -1.32
SNX1-211ENST00000560829 KRTAP3-3Q9BYR6 98 aa6.83□□□□□ -1.32
SNX1-211ENST00000560829 KRTAP3-2Q9BYR7 98 aa6.83□□□□□ -1.32
SNX1-211ENST00000560829 ACYP2P14621 99 aa6.81□□□□□ -1.32
SNX1-211ENST00000560829 A8MUN3 132 aa6.77□□□□□ -1.33
SNX1-211ENST00000560829 C4orf26Q17RF5 130 aa6.75□□□□□ -1.33
SNX1-211ENST00000560829 LPAP08519 4548 aa6.75□□□□□ -1.33
SNX1-211ENST00000560829 LRP2P98164 4655 aa6.75□□□□□ -1.33
SNX1-211ENST00000560829 PCLOQ9Y6V0 5065 aa6.74□□□□□ -1.33
SNX1-211ENST00000560829 Q1T7F1 81 aa6.74□□□□□ -1.33
SNX1-211ENST00000560829 MPLKIPQ8TAP9 179 aa6.72□□□□□ -1.33
SNX1-211ENST00000560829 KRTAP3-1Q9BYR8 98 aa6.7□□□□□ -1.34
SNX1-211ENST00000560829 V9GYY9 64 aa6.7□□□□□ -1.34
SNX1-211ENST00000560829 CHKB-CPT1BH3BT56 60 aa6.69□□□□□ -1.34
SNX1-211ENST00000560829 COX6B2Q6YFQ2 88 aa6.68□□□□□ -1.34
SNX1-211ENST00000560829 LINC01558Q9Y6Z2 57 aa6.63□□□□□ -1.35
SNX1-211ENST00000560829 MUC17Q685J3 4493 aa6.62□□□□□ -1.35
SNX1-211ENST00000560829 HMCN2Q8NDA2 5059 aa6.61□□□□□ -1.35
SNX1-211ENST00000560829 SEC61BP60468 96 aaKnown RBP6.61□□□□□ -1.35
SNX1-211ENST00000560829 HERC1Q15751 4861 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 137.4 ms