RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 IGLV7-46A0A075B6I9 117 aa7.98□□□□□ -1.13
LDLR-213ENST00000560502 Q5XG85 94 aa7.98□□□□□ -1.13
LDLR-213ENST00000560502 ASB16-AS1Q495Z4 193 aa7.97□□□□□ -1.13
LDLR-213ENST00000560502 RPS29P62273 56 aaKnown RBP7.95□□□□□ -1.14
LDLR-213ENST00000560502 SPAG11AQ6PDA7 123 aa7.95□□□□□ -1.14
LDLR-213ENST00000560502 LIMD2Q9BT23 127 aa7.95□□□□□ -1.14
LDLR-213ENST00000560502 LINC00472Q9H8W2 130 aa7.95□□□□□ -1.14
LDLR-213ENST00000560502 HIST1H4AP62805 103 aaKnown RBP7.94□□□□□ -1.14
LDLR-213ENST00000560502 SPINK1P00995 79 aa7.93□□□□□ -1.14
LDLR-213ENST00000560502 C4orf48Q5BLP8 95 aa7.93□□□□□ -1.14
LDLR-213ENST00000560502 HRCT1Q6UXD1 115 aa7.93□□□□□ -1.14
LDLR-213ENST00000560502 IGKV4-1P06312 121 aa7.9□□□□□ -1.14
LDLR-213ENST00000560502 DSCR10P59022 87 aa7.9□□□□□ -1.14
LDLR-213ENST00000560502 FAM236AA0A1B0GUQ0 79 aa7.89□□□□□ -1.15
LDLR-213ENST00000560502 FAM236BA0A1B0GV22 79 aa7.89□□□□□ -1.15
LDLR-213ENST00000560502 A8MWP4 228 aa7.89□□□□□ -1.15
LDLR-213ENST00000560502 Q96NJ1 140 aa7.89□□□□□ -1.15
LDLR-213ENST00000560502 NDUFB1O75438 58 aa7.88□□□□□ -1.15
LDLR-213ENST00000560502 FP248Q71RG6 208 aaPredicted RBP7.88□□□□□ -1.15
LDLR-213ENST00000560502 A0A087WVE0 104 aa7.86□□□□□ -1.15
LDLR-213ENST00000560502 ATOX1O00244 68 aa7.86□□□□□ -1.15
LDLR-213ENST00000560502 KRTAP13-3Q3SY46 172 aa7.86□□□□□ -1.15
LDLR-213ENST00000560502 K7EQZ3 153 aa7.85□□□□□ -1.15
LDLR-213ENST00000560502 PRR15Q8IV56 129 aa7.85□□□□□ -1.15
LDLR-213ENST00000560502 Q8N9L7 120 aa7.83□□□□□ -1.16
LDLR-213ENST00000560502 DEFB116Q30KQ4 102 aa7.82□□□□□ -1.16
LDLR-213ENST00000560502 SMIM20Q8N5G0 67 aa7.82□□□□□ -1.16
LDLR-213ENST00000560502 KRTAP4-1Q9BYQ7 146 aa7.81□□□□□ -1.16
LDLR-213ENST00000560502 A0A1B0GVX0 72 aa7.8□□□□□ -1.16
LDLR-213ENST00000560502 HCG22E2RYF7 251 aa7.8□□□□□ -1.16
LDLR-213ENST00000560502 C1orf195Q5TG92 126 aa7.79□□□□□ -1.16
LDLR-213ENST00000560502 ANAPC13Q9BS18 74 aa7.79□□□□□ -1.16
LDLR-213ENST00000560502 LCE2DQ5TA82 110 aaPredicted RBP7.78□□□□□ -1.16
LDLR-213ENST00000560502 C8orf87E5RJ46 101 aa7.77□□□□□ -1.17
LDLR-213ENST00000560502 PCP4P48539 62 aa7.77□□□□□ -1.17
LDLR-213ENST00000560502 SEC61BP60468 96 aaKnown RBP7.75□□□□□ -1.17
LDLR-213ENST00000560502 MMP24-AS1A0A0U1RRL7 71 aa7.74□□□□□ -1.17
LDLR-213ENST00000560502 CASC2Q6XLA1 102 aa7.74□□□□□ -1.17
LDLR-213ENST00000560502 C8orf17Q9NRJ1 99 aa7.74□□□□□ -1.17
LDLR-213ENST00000560502 FSIP2Q5CZC0 6907 aa7.73□□□□□ -1.17
LDLR-213ENST00000560502 SERP2Q8N6R1 65 aa7.73□□□□□ -1.17
LDLR-213ENST00000560502 TRAV7A0A075B6U4 112 aa7.72□□□□□ -1.17
LDLR-213ENST00000560502 IGHV6-1A0A0B4J1U7 121 aa7.72□□□□□ -1.17
LDLR-213ENST00000560502 hDV103S1A0JD37 113 aa7.71□□□□□ -1.18
LDLR-213ENST00000560502 XP32Q5T750 250 aa7.7□□□□□ -1.18
LDLR-213ENST00000560502 TMEM254Q8TBM7 123 aa7.7□□□□□ -1.18
LDLR-213ENST00000560502 COX7CP15954 63 aa7.69□□□□□ -1.18
LDLR-213ENST00000560502 LCE2CQ5TA81 110 aa7.69□□□□□ -1.18
LDLR-213ENST00000560502 WFDC13Q8IUB5 93 aa7.69□□□□□ -1.18
LDLR-213ENST00000560502 UQCRQO14949 82 aa7.68□□□□□ -1.18
LDLR-213ENST00000560502 OCR1Q9BZK8 76 aa7.68□□□□□ -1.18
LDLR-213ENST00000560502 CRCT1Q9UGL9 99 aa7.68□□□□□ -1.18
LDLR-213ENST00000560502 LINC00313P59037 77 aa7.66□□□□□ -1.18
LDLR-213ENST00000560502 MRPL34Q9BQ48 92 aaKnown RBP7.66□□□□□ -1.18
LDLR-213ENST00000560502 KRTAP19-2Q3LHN2 52 aa7.65□□□□□ -1.18
LDLR-213ENST00000560502 TP53AIP1Q9HCN2 124 aa7.65□□□□□ -1.18
LDLR-213ENST00000560502 C5orf47Q569G3 176 aa7.6□□□□□ -1.19
LDLR-213ENST00000560502 NOTCH2NLQ7Z3S9 236 aa7.6□□□□□ -1.19
LDLR-213ENST00000560502 MT1HP80294 61 aa7.59□□□□□ -1.19
LDLR-213ENST00000560502 Q8N9P0 234 aaPredicted RBP7.58□□□□□ -1.2
LDLR-213ENST00000560502 KRTAP16-1A8MUX0 517 aa7.57□□□□□ -1.2
LDLR-213ENST00000560502 H3BPC8 53 aa7.57□□□□□ -1.2
LDLR-213ENST00000560502 CCDC179H3BU77 68 aa7.55□□□□□ -1.2
LDLR-213ENST00000560502 NDUFS5O43920 106 aa7.55□□□□□ -1.2
LDLR-213ENST00000560502 MP68P56378 58 aa7.55□□□□□ -1.2
LDLR-213ENST00000560502 KLKP1Q107X0 134 aa7.55□□□□□ -1.2
LDLR-213ENST00000560502 TRAV22A0A0B4J277 110 aa7.54□□□□□ -1.2
LDLR-213ENST00000560502 PCOTHQ58A44 107 aa7.53□□□□□ -1.2
LDLR-213ENST00000560502 C20orf197Q8N268 126 aa7.52□□□□□ -1.21
LDLR-213ENST00000560502 NDUFC1O43677 76 aa7.51□□□□□ -1.21
LDLR-213ENST00000560502 H0Y9P7 68 aa7.5□□□□□ -1.21
LDLR-213ENST00000560502 LORP23490 312 aaPredicted RBP7.5□□□□□ -1.21
LDLR-213ENST00000560502 C20orf166-AS1Q96NR2 134 aa7.49□□□□□ -1.21
LDLR-213ENST00000560502 C9orf92A6NGG3 77 aa7.48□□□□□ -1.21
LDLR-213ENST00000560502 KRTAP10-6P60371 365 aaPredicted RBP7.47□□□□□ -1.21
LDLR-213ENST00000560502 A8MUU9 505 aa7.46□□□□□ -1.22
LDLR-213ENST00000560502 ZCCHC13Q8WW36 166 aaKnown RBP7.46□□□□□ -1.22
LDLR-213ENST00000560502 Q75L30 129 aa7.44□□□□□ -1.22
LDLR-213ENST00000560502 LOC101927531A0A1B0GV80 90 aa7.43□□□□□ -1.22
LDLR-213ENST00000560502 LINC00208Q96KT6 92 aa7.43□□□□□ -1.22
LDLR-213ENST00000560502 SNURFQ9Y675 71 aa7.43□□□□□ -1.22
LDLR-213ENST00000560502 C1orf64Q8NEQ6 169 aa7.42□□□□□ -1.22
LDLR-213ENST00000560502 TMEM258P61165 79 aa7.41□□□□□ -1.22
LDLR-213ENST00000560502 FLGP20930 4061 aaPredicted RBP7.4□□□□□ -1.22
LDLR-213ENST00000560502 H7BZZ5 65 aa7.4□□□□□ -1.22
LDLR-213ENST00000560502 Q5W150 140 aa7.39□□□□□ -1.23
LDLR-213ENST00000560502 RPL37P61927 97 aaKnown RBP7.38□□□□□ -1.23
LDLR-213ENST00000560502 ATP5EP56381 51 aaPredicted RBP7.37□□□□□ -1.23
LDLR-213ENST00000560502 CYSTM1Q9H1C7 97 aa7.37□□□□□ -1.23
LDLR-213ENST00000560502 M0R2T5 61 aa7.35□□□□□ -1.23
LDLR-213ENST00000560502 IGKV2-30P06310 120 aa7.34□□□□□ -1.23
LDLR-213ENST00000560502 COX6B2Q6YFQ2 88 aa7.32□□□□□ -1.24
LDLR-213ENST00000560502 SPANXA2-OT1Q8N9U9 137 aa7.32□□□□□ -1.24
LDLR-213ENST00000560502 CYP4F30PQ9H0H9 118 aa7.32□□□□□ -1.24
LDLR-213ENST00000560502 ATP11AUNQ6ZP68 121 aa7.3□□□□□ -1.24
LDLR-213ENST00000560502 C7orf65Q6ZTY9 151 aa7.3□□□□□ -1.24
LDLR-213ENST00000560502 FAM236DA0A1B0GTK5 79 aa7.29□□□□□ -1.24
LDLR-213ENST00000560502 FAM236CP0DP71 79 aa7.29□□□□□ -1.24
LDLR-213ENST00000560502 IGKV2D-30A0A075B6S6 120 aa7.24□□□□□ -1.25
LDLR-213ENST00000560502 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms