RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SPRR1BP22528 89 aa3.09□□□□□ -1.91
LDLR-209ENST00000558528 PRLHP81277 87 aa3.09□□□□□ -1.91
LDLR-209ENST00000558528 Q6JHZ5 121 aa3.09□□□□□ -1.91
LDLR-209ENST00000558528 KRTAP13-1Q8IUC0 172 aa3.09□□□□□ -1.91
LDLR-209ENST00000558528 FAT3Q8TDW7 4589 aa3.09□□□□□ -1.92
LDLR-209ENST00000558528 LOC110117498A0A087WWA1 95 aa3.08□□□□□ -1.92
LDLR-209ENST00000558528 PMAIP1Q13794 54 aa3.08□□□□□ -1.92
LDLR-209ENST00000558528 SIGMAR1Q99720 223 aa3.08□□□□□ -1.92
LDLR-209ENST00000558528 A0A1B0GV72 72 aa3.07□□□□□ -1.92
LDLR-209ENST00000558528 ERC2-IT1O76042 136 aa3.07□□□□□ -1.92
LDLR-209ENST00000558528 CCKP06307 115 aa3.07□□□□□ -1.92
LDLR-209ENST00000558528 LINC00483Q53H64 154 aa3.07□□□□□ -1.92
LDLR-209ENST00000558528 SPINK6Q6UWN8 80 aa3.07□□□□□ -1.92
LDLR-209ENST00000558528 SSBP3-AS1Q7Z2R9 100 aa3.06□□□□□ -1.92
LDLR-209ENST00000558528 KRTAP11-1Q8IUC1 163 aa3.06□□□□□ -1.92
LDLR-209ENST00000558528 ST20-AS1Q8NBB2 130 aa3.06□□□□□ -1.92
LDLR-209ENST00000558528 SPRR4Q96PI1 79 aa3.06□□□□□ -1.92
LDLR-209ENST00000558528 C14orf132Q9NPU4 83 aa3.06□□□□□ -1.92
LDLR-209ENST00000558528 TRBV7-4A0A0J9YYF1 115 aa3.05□□□□□ -1.92
LDLR-209ENST00000558528 FAM229BQ4G0N7 80 aa3.05□□□□□ -1.92
LDLR-209ENST00000558528 LUZP6Q538Z0 58 aa3.05□□□□□ -1.92
LDLR-209ENST00000558528 Q6ZQT0 140 aa3.05□□□□□ -1.92
LDLR-209ENST00000558528 UBL5Q9BZL1 73 aa3.05□□□□□ -1.92
LDLR-209ENST00000558528 Q6Q795 121 aa3.04□□□□□ -1.92
LDLR-209ENST00000558528 DNAH8Q96JB1 4490 aa3.04□□□□□ -1.92
LDLR-209ENST00000558528 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.03□□□□□ -1.92
LDLR-209ENST00000558528 K7ERS5 55 aa3.03□□□□□ -1.92
LDLR-209ENST00000558528 CRYGAP11844 174 aa3.03□□□□□ -1.92
LDLR-209ENST00000558528 C9orf153Q5TBE3 101 aa3.03□□□□□ -1.92
LDLR-209ENST00000558528 Q5VSD8 79 aa3.03□□□□□ -1.92
LDLR-209ENST00000558528 VPS25Q9BRG1 176 aa3.03□□□□□ -1.92
LDLR-209ENST00000558528 TNXBP22105 4242 aa3.02□□□□□ -1.93
LDLR-209ENST00000558528 NREPQ16612 68 aa3.02□□□□□ -1.93
LDLR-209ENST00000558528 DEFB116Q30KQ4 102 aa3.02□□□□□ -1.93
LDLR-209ENST00000558528 LINC00643Q86TS7 51 aa3.02□□□□□ -1.93
LDLR-209ENST00000558528 SS18L2Q9UHA2 77 aa3.02□□□□□ -1.93
LDLR-209ENST00000558528 TRBV7-7A0A0K0K1E9 115 aa3.01□□□□□ -1.93
LDLR-209ENST00000558528 SMR3BP02814 79 aaPredicted RBP3.01□□□□□ -1.93
LDLR-209ENST00000558528 ATP5EP2Q5VTU8 51 aa3.01□□□□□ -1.93
LDLR-209ENST00000558528 SPAG11AQ6PDA7 123 aa3.01□□□□□ -1.93
LDLR-209ENST00000558528 IGFL1Q6UW32 110 aa3.01□□□□□ -1.93
LDLR-209ENST00000558528 C3orf22Q8N5N4 141 aa3.01□□□□□ -1.93
LDLR-209ENST00000558528 SPANXA2-OT1Q8N9U9 137 aa3.01□□□□□ -1.93
LDLR-209ENST00000558528 HAMPP81172 84 aa3□□□□□ -1.93
LDLR-209ENST00000558528 LCE1AQ5T7P2 110 aa3□□□□□ -1.93
LDLR-209ENST00000558528 Q5W150 140 aa3□□□□□ -1.93
LDLR-209ENST00000558528 IMUPQ9GZP8 106 aa3□□□□□ -1.93
LDLR-209ENST00000558528 FSIP2Q5CZC0 6907 aa3□□□□□ -1.93
LDLR-209ENST00000558528 A0A1W2PNM2 257 aa2.99□□□□□ -1.93
LDLR-209ENST00000558528 J3KT08 172 aa2.99□□□□□ -1.93
LDLR-209ENST00000558528 MOBPQ13875 183 aa2.99□□□□□ -1.93
LDLR-209ENST00000558528 LINC00846Q9NV44 126 aa2.99□□□□□ -1.93
LDLR-209ENST00000558528 SPINK1P00995 79 aa2.98□□□□□ -1.93
LDLR-209ENST00000558528 LINC00313P59037 77 aa2.98□□□□□ -1.93
LDLR-209ENST00000558528 RPS29P62273 56 aaKnown RBP2.98□□□□□ -1.93
LDLR-209ENST00000558528 LIMD2Q9BT23 127 aa2.98□□□□□ -1.93
LDLR-209ENST00000558528 CRCT1Q9UGL9 99 aa2.98□□□□□ -1.93
LDLR-209ENST00000558528 A0A087WSZ3 146 aa2.97□□□□□ -1.93
LDLR-209ENST00000558528 NDUFB1O75438 58 aa2.97□□□□□ -1.93
LDLR-209ENST00000558528 Q5XG85 94 aa2.97□□□□□ -1.93
LDLR-209ENST00000558528 KRTAP1-4P0C5Y4 121 aa2.96□□□□□ -1.94
LDLR-209ENST00000558528 DSCR10P59022 87 aa2.96□□□□□ -1.94
LDLR-209ENST00000558528 ASB16-AS1Q495Z4 193 aa2.96□□□□□ -1.94
LDLR-209ENST00000558528 ANAPC11Q9NYG5 84 aa2.96□□□□□ -1.94
LDLR-209ENST00000558528 SCGB1A1P11684 91 aa2.95□□□□□ -1.94
LDLR-209ENST00000558528 KRTAP10-4P60372 401 aaPredicted RBP2.95□□□□□ -1.94
LDLR-209ENST00000558528 LINC00304Q8N9R0 145 aa2.94□□□□□ -1.94
LDLR-209ENST00000558528 FAM236DA0A1B0GTK5 79 aa2.93□□□□□ -1.94
LDLR-209ENST00000558528 MT-ATP8P03928 68 aa2.93□□□□□ -1.94
LDLR-209ENST00000558528 FAM236CP0DP71 79 aa2.93□□□□□ -1.94
LDLR-209ENST00000558528 HIST1H4AP62805 103 aaKnown RBP2.93□□□□□ -1.94
LDLR-209ENST00000558528 KRTAP13-2Q52LG2 175 aa2.93□□□□□ -1.94
LDLR-209ENST00000558528 LCE1DQ5T752 114 aa2.93□□□□□ -1.94
LDLR-209ENST00000558528 HRCT1Q6UXD1 115 aa2.93□□□□□ -1.94
LDLR-209ENST00000558528 SMIM20Q8N5G0 67 aa2.93□□□□□ -1.94
LDLR-209ENST00000558528 LINC00472Q9H8W2 130 aa2.93□□□□□ -1.94
LDLR-209ENST00000558528 IGKV3D-7A0A0C4DH55 119 aa2.92□□□□□ -1.94
LDLR-209ENST00000558528 A8MWP4 228 aa2.92□□□□□ -1.94
LDLR-209ENST00000558528 IGKV4-1P06312 121 aa2.92□□□□□ -1.94
LDLR-209ENST00000558528 A0A0G2JQZ4 141 aa2.91□□□□□ -1.94
LDLR-209ENST00000558528 KRTAP10-8P60410 259 aa2.9□□□□□ -1.95
LDLR-209ENST00000558528 PRR15Q8IV56 129 aa2.9□□□□□ -1.95
LDLR-209ENST00000558528 A8MUN3 132 aa2.89□□□□□ -1.95
LDLR-209ENST00000558528 ATOX1O00244 68 aa2.89□□□□□ -1.95
LDLR-209ENST00000558528 A6NED7 52 aa2.88□□□□□ -1.95
LDLR-209ENST00000558528 HCG22E2RYF7 251 aa2.88□□□□□ -1.95
LDLR-209ENST00000558528 FP248Q71RG6 208 aaPredicted RBP2.88□□□□□ -1.95
LDLR-209ENST00000558528 LPAP08519 4548 aa2.88□□□□□ -1.95
LDLR-209ENST00000558528 FAM236AA0A1B0GUQ0 79 aa2.87□□□□□ -1.95
LDLR-209ENST00000558528 FAM236BA0A1B0GV22 79 aa2.87□□□□□ -1.95
LDLR-209ENST00000558528 K7EQZ3 153 aa2.87□□□□□ -1.95
LDLR-209ENST00000558528 Q96NJ1 140 aa2.87□□□□□ -1.95
LDLR-209ENST00000558528 TP53AIP1Q9HCN2 124 aa2.87□□□□□ -1.95
LDLR-209ENST00000558528 hDV103S1A0JD37 113 aa2.86□□□□□ -1.95
LDLR-209ENST00000558528 CASC2Q6XLA1 102 aa2.86□□□□□ -1.95
LDLR-209ENST00000558528 A0A087WVE0 104 aa2.85□□□□□ -1.95
LDLR-209ENST00000558528 TMEM254Q8TBM7 123 aa2.85□□□□□ -1.95
LDLR-209ENST00000558528 MRPL34Q9BQ48 92 aaKnown RBP2.85□□□□□ -1.95
LDLR-209ENST00000558528 TRAV7A0A075B6U4 112 aa2.84□□□□□ -1.95
LDLR-209ENST00000558528 A8MUU9 505 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms