RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 A8MU10 97 aa7.63□□□□□ -1.19
LDLR-207ENST00000558013 CD164Q04900 197 aa7.63□□□□□ -1.19
LDLR-207ENST00000558013 H3BPC8 53 aa7.62□□□□□ -1.19
LDLR-207ENST00000558013 SPANXA2-OT1Q8N9U9 137 aa7.62□□□□□ -1.19
LDLR-207ENST00000558013 LRP1BQ9NZR2 4599 aa7.61□□□□□ -1.19
LDLR-207ENST00000558013 CIRBP-AS1Q8TBR5 109 aa7.61□□□□□ -1.19
LDLR-207ENST00000558013 LY6G6CO95867 125 aa7.61□□□□□ -1.19
LDLR-207ENST00000558013 ZNF706Q9Y5V0 76 aaPredicted RBP7.61□□□□□ -1.19
LDLR-207ENST00000558013 C1orf134Q5TEV5 83 aa7.6□□□□□ -1.19
LDLR-207ENST00000558013 CDK2AP2O75956 126 aa7.59□□□□□ -1.19
LDLR-207ENST00000558013 HYDINQ4G0P3 5121 aa7.59□□□□□ -1.19
LDLR-207ENST00000558013 KRTAP10-2P60368 255 aa7.58□□□□□ -1.2
LDLR-207ENST00000558013 IGLV7-43P04211 117 aa7.58□□□□□ -1.2
LDLR-207ENST00000558013 COA5Q86WW8 74 aa7.58□□□□□ -1.2
LDLR-207ENST00000558013 Q8N9P0 234 aaPredicted RBP7.57□□□□□ -1.2
LDLR-207ENST00000558013 IGLV7-46A0A075B6I9 117 aa7.57□□□□□ -1.2
LDLR-207ENST00000558013 MRPL34Q9BQ48 92 aaKnown RBP7.57□□□□□ -1.2
LDLR-207ENST00000558013 Q5W150 140 aa7.56□□□□□ -1.2
LDLR-207ENST00000558013 Q5VV11 94 aa7.56□□□□□ -1.2
LDLR-207ENST00000558013 TP53AIP1Q9HCN2 124 aa7.55□□□□□ -1.2
LDLR-207ENST00000558013 PRR15LQ9BU68 103 aa7.52□□□□□ -1.21
LDLR-207ENST00000558013 PKD1P98161 4303 aa7.51□□□□□ -1.21
LDLR-207ENST00000558013 RETNLBQ9BQ08 111 aa7.5□□□□□ -1.21
LDLR-207ENST00000558013 CHKB-CPT1BH3BT56 60 aa7.49□□□□□ -1.21
LDLR-207ENST00000558013 SPAG11AQ6PDA7 123 aa7.49□□□□□ -1.21
LDLR-207ENST00000558013 FAT2Q9NYQ8 4349 aa7.49□□□□□ -1.21
LDLR-207ENST00000558013 VPS13BQ7Z7G8 4022 aa7.49□□□□□ -1.21
LDLR-207ENST00000558013 HRES1P13985 223 aa7.48□□□□□ -1.21
LDLR-207ENST00000558013 KRTAP13-2Q52LG2 175 aa7.47□□□□□ -1.21
LDLR-207ENST00000558013 KRTAP10-1P60331 282 aa7.46□□□□□ -1.22
LDLR-207ENST00000558013 KRTAP13-3Q3SY46 172 aa7.45□□□□□ -1.22
LDLR-207ENST00000558013 LIMD2Q9BT23 127 aa7.45□□□□□ -1.22
LDLR-207ENST00000558013 PKHD1P08F94 4074 aa7.44□□□□□ -1.22
LDLR-207ENST00000558013 PMAIP1Q13794 54 aa7.43□□□□□ -1.22
LDLR-207ENST00000558013 PRR26Q8N8Z3 221 aa7.42□□□□□ -1.22
LDLR-207ENST00000558013 SSBP3-AS1Q7Z2R9 100 aa7.41□□□□□ -1.22
LDLR-207ENST00000558013 LCA10Q71F78 164 aa7.41□□□□□ -1.22
LDLR-207ENST00000558013 LOC101927531A0A1B0GV80 90 aa7.38□□□□□ -1.23
LDLR-207ENST00000558013 LINC00313P59037 77 aa7.38□□□□□ -1.23
LDLR-207ENST00000558013 A6NED7 52 aa7.38□□□□□ -1.23
LDLR-207ENST00000558013 SPTSSBQ8NFR3 76 aa7.36□□□□□ -1.23
LDLR-207ENST00000558013 Q75L30 129 aa7.36□□□□□ -1.23
LDLR-207ENST00000558013 Q6ZSA8 131 aa7.36□□□□□ -1.23
LDLR-207ENST00000558013 KRTAP1-4P0C5Y4 121 aa7.35□□□□□ -1.23
LDLR-207ENST00000558013 LINC01558Q9Y6Z2 57 aa7.34□□□□□ -1.23
LDLR-207ENST00000558013 SPINK7P58062 85 aa7.34□□□□□ -1.24
LDLR-207ENST00000558013 C8orf87E5RJ46 101 aa7.32□□□□□ -1.24
LDLR-207ENST00000558013 KRTAP16-1A8MUX0 517 aa7.3□□□□□ -1.24
LDLR-207ENST00000558013 PLA2G1BP04054 148 aaKnown RBP7.3□□□□□ -1.24
LDLR-207ENST00000558013 FAM229AH3BQW9 127 aa7.27□□□□□ -1.24
LDLR-207ENST00000558013 IGKV2D-30A0A075B6S6 120 aa7.27□□□□□ -1.25
LDLR-207ENST00000558013 IGKV2-30P06310 120 aa7.27□□□□□ -1.25
LDLR-207ENST00000558013 FAT1Q14517 4588 aa7.27□□□□□ -1.25
LDLR-207ENST00000558013 ACYP2P14621 99 aa7.26□□□□□ -1.25
LDLR-207ENST00000558013 DMAC1Q96GE9 116 aa7.25□□□□□ -1.25
LDLR-207ENST00000558013 SACSQ9NZJ4 4579 aa7.24□□□□□ -1.25
LDLR-207ENST00000558013 TYMSOSQ8TAI1 123 aa7.23□□□□□ -1.25
LDLR-207ENST00000558013 CDC42SE1Q9NRR8 79 aa7.23□□□□□ -1.25
LDLR-207ENST00000558013 SMR3BP02814 79 aaPredicted RBP7.22□□□□□ -1.25
LDLR-207ENST00000558013 DYNC1H1Q14204 4646 aaKnown RBP7.21□□□□□ -1.25
LDLR-207ENST00000558013 C4orf48Q5BLP8 95 aa7.21□□□□□ -1.26
LDLR-207ENST00000558013 ATP11AUNQ6ZP68 121 aa7.21□□□□□ -1.26
LDLR-207ENST00000558013 A6NN06 94 aa7.16□□□□□ -1.26
LDLR-207ENST00000558013 RBM12B-AS1Q9P1G2 102 aa7.16□□□□□ -1.26
LDLR-207ENST00000558013 SPINK1P00995 79 aa7.14□□□□□ -1.27
LDLR-207ENST00000558013 C7orf65Q6ZTY9 151 aa7.14□□□□□ -1.27
LDLR-207ENST00000558013 Q8N1X5 172 aa7.13□□□□□ -1.27
LDLR-207ENST00000558013 A0A1B0GU69 56 aa7.12□□□□□ -1.27
LDLR-207ENST00000558013 C9orf92A6NGG3 77 aa7.11□□□□□ -1.27
LDLR-207ENST00000558013 LINC00304Q8N9R0 145 aa7.11□□□□□ -1.27
LDLR-207ENST00000558013 KTN1-AS1Q86SY8 53 aa7.1□□□□□ -1.27
LDLR-207ENST00000558013 APOBP04114 4563 aaKnown RBP7.08□□□□□ -1.28
LDLR-207ENST00000558013 KMT2CQ8NEZ4 4911 aaKnown RBP7.07□□□□□ -1.28
LDLR-207ENST00000558013 LRP1Q07954 4544 aaKnown RBP7.02□□□□□ -1.29
LDLR-207ENST00000558013 KRTAP10-4P60372 401 aaPredicted RBP7□□□□□ -1.29
LDLR-207ENST00000558013 PKHD1L1Q86WI1 4243 aa6.99□□□□□ -1.29
LDLR-207ENST00000558013 ADM2Q7Z4H4 148 aa6.98□□□□□ -1.29
LDLR-207ENST00000558013 RYR2Q92736 4967 aa6.98□□□□□ -1.29
LDLR-207ENST00000558013 MIR22HGQ0VDD5 57 aa6.97□□□□□ -1.29
LDLR-207ENST00000558013 PRAC1Q96KF2 57 aa6.97□□□□□ -1.29
LDLR-207ENST00000558013 SPATA8Q6RVD6 105 aa6.97□□□□□ -1.29
LDLR-207ENST00000558013 FLG2Q5D862 2391 aaPredicted RBP6.96□□□□□ -1.3
LDLR-207ENST00000558013 A0A1B0GVY2 172 aa6.96□□□□□ -1.3
LDLR-207ENST00000558013 UQCR11O14957 56 aa6.96□□□□□ -1.3
LDLR-207ENST00000558013 KRTAP3-1Q9BYR8 98 aa6.95□□□□□ -1.3
LDLR-207ENST00000558013 RPS29P62273 56 aaKnown RBP6.94□□□□□ -1.3
LDLR-207ENST00000558013 MYCBP2O75592 4640 aa6.94□□□□□ -1.3
LDLR-207ENST00000558013 A8MUU9 505 aa6.92□□□□□ -1.3
LDLR-207ENST00000558013 DMBT1Q9UGM3 2413 aaPredicted RBP6.92□□□□□ -1.3
LDLR-207ENST00000558013 C20orf166-AS1Q96NR2 134 aa6.92□□□□□ -1.3
LDLR-207ENST00000558013 HSPG2P98160 4391 aa6.89□□□□□ -1.31
LDLR-207ENST00000558013 FAT3Q8TDW7 4589 aa6.86□□□□□ -1.31
LDLR-207ENST00000558013 H3BS24 57 aa6.83□□□□□ -1.32
LDLR-207ENST00000558013 TNXBP22105 4242 aa6.83□□□□□ -1.32
LDLR-207ENST00000558013 H0YAA0 97 aa6.81□□□□□ -1.32
LDLR-207ENST00000558013 KRTAP21-3Q3LHN1 58 aa6.8□□□□□ -1.32
LDLR-207ENST00000558013 RYR3Q15413 4870 aa6.8□□□□□ -1.32
LDLR-207ENST00000558013 KRTAP17-1Q9BYP8 105 aa6.75□□□□□ -1.33
LDLR-207ENST00000558013 KIAA1109Q2LD37 5005 aa6.74□□□□□ -1.33
LDLR-207ENST00000558013 A0A1B0GU33 70 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms