RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 CEP295Q9C0D2 2601 aa0.64□□□□□ -2.31
VRK1-205ENST00000555402 H0YGG7 62 aa0.64□□□□□ -2.31
VRK1-205ENST00000555402 WT1-ASQ06250 92 aa0.64□□□□□ -2.31
VRK1-205ENST00000555402 FAM186AA6NE01 2351 aa0.64□□□□□ -2.31
VRK1-205ENST00000555402 UBR5O95071 2799 aaPredicted RBP0.64□□□□□ -2.31
VRK1-205ENST00000555402 EYSQ5T1H1 3165 aa0.64□□□□□ -2.31
VRK1-205ENST00000555402 EP400Q96L91 3159 aa0.64□□□□□ -2.31
VRK1-205ENST00000555402 SPTBN5Q9NRC6 3674 aaKnown RBP0.64□□□□□ -2.31
VRK1-205ENST00000555402 CELSR3Q9NYQ7 3312 aa0.64□□□□□ -2.31
VRK1-205ENST00000555402 CFAP54Q96N23 3096 aa0.63□□□□□ -2.31
VRK1-205ENST00000555402 WDR87Q6ZQQ6 2873 aa0.63□□□□□ -2.31
VRK1-205ENST00000555402 UBR4Q5T4S7 5183 aa0.63□□□□□ -2.31
VRK1-205ENST00000555402 WDFY4Q6ZS81 3184 aa0.63□□□□□ -2.31
VRK1-205ENST00000555402 S4R3F8 94 aa0.63□□□□□ -2.31
VRK1-205ENST00000555402 TLN2Q9Y4G6 2542 aa0.63□□□□□ -2.31
VRK1-205ENST00000555402 BRCA2P51587 3418 aa0.63□□□□□ -2.31
VRK1-205ENST00000555402 CHD9Q3L8U1 2897 aa0.63□□□□□ -2.31
VRK1-205ENST00000555402 CENPFP49454 3210 aa0.62□□□□□ -2.31
VRK1-205ENST00000555402 SPTA1P02549 2419 aa0.62□□□□□ -2.31
VRK1-205ENST00000555402 HIVEP3Q5T1R4 2406 aa0.62□□□□□ -2.31
VRK1-205ENST00000555402 CSPG4Q6UVK1 2322 aa0.62□□□□□ -2.31
VRK1-205ENST00000555402 SPEGQ15772 3267 aa0.62□□□□□ -2.31
VRK1-205ENST00000555402 C5orf42Q9H799 3197 aa0.62□□□□□ -2.31
VRK1-205ENST00000555402 KIAA1109Q2LD37 5005 aa0.62□□□□□ -2.31
VRK1-205ENST00000555402 USP9YO00507 2555 aaPredicted RBP0.61□□□□□ -2.31
VRK1-205ENST00000555402 PKD1L1Q8TDX9 2849 aa0.61□□□□□ -2.31
VRK1-205ENST00000555402 RIF1Q5UIP0 2472 aaKnown RBP0.61□□□□□ -2.31
VRK1-205ENST00000555402 UTP20O75691 2785 aaKnown RBP0.61□□□□□ -2.31
VRK1-205ENST00000555402 TIMM8BQ9Y5J9 83 aaPredicted RBP0.61□□□□□ -2.31
VRK1-205ENST00000555402 PCLOQ9Y6V0 5065 aa0.61□□□□□ -2.31
VRK1-205ENST00000555402 HTTP42858 3142 aa0.6□□□□□ -2.31
VRK1-205ENST00000555402 RELNP78509 3460 aa0.6□□□□□ -2.31
VRK1-205ENST00000555402 PDZD2O15018 2839 aa0.6□□□□□ -2.31
VRK1-205ENST00000555402 ASPMQ8IZT6 3477 aa0.6□□□□□ -2.31
VRK1-205ENST00000555402 NBEAQ8NFP9 2946 aa0.6□□□□□ -2.31
VRK1-205ENST00000555402 TENM4Q6N022 2769 aa0.59□□□□□ -2.31
VRK1-205ENST00000555402 IGF2RP11717 2491 aa0.59□□□□□ -2.31
VRK1-205ENST00000555402 TNXBP22105 4242 aa0.59□□□□□ -2.31
VRK1-205ENST00000555402 CRYBG3Q68DQ2 2970 aa0.59□□□□□ -2.31
VRK1-205ENST00000555402 MGAM2Q2M2H8 2515 aa0.59□□□□□ -2.31
VRK1-205ENST00000555402 SMIM27A0A1W2PRY6 76 aa0.59□□□□□ -2.31
VRK1-205ENST00000555402 PRLHP81277 87 aa0.59□□□□□ -2.31
VRK1-205ENST00000555402 ABRACLQ9P1F3 81 aa0.59□□□□□ -2.31
VRK1-205ENST00000555402 PRUNE2Q8WUY3 3088 aa0.59□□□□□ -2.32
VRK1-205ENST00000555402 ITPR1Q14643 2758 aa0.59□□□□□ -2.32
VRK1-205ENST00000555402 CELSR1Q9NYQ6 3014 aa0.59□□□□□ -2.32
VRK1-205ENST00000555402 RYR1P21817 5038 aa0.58□□□□□ -2.32
VRK1-205ENST00000555402 TGP01266 2768 aa0.58□□□□□ -2.32
VRK1-205ENST00000555402 TENM2Q9NT68 2774 aa0.58□□□□□ -2.32
VRK1-205ENST00000555402 BSNQ9UPA5 3926 aa0.58□□□□□ -2.32
VRK1-205ENST00000555402 H3BUA1 57 aa0.58□□□□□ -2.32
VRK1-205ENST00000555402 TOMM5Q8N4H5 51 aa0.58□□□□□ -2.32
VRK1-205ENST00000555402 WNK1Q9H4A3 2382 aa0.57□□□□□ -2.32
VRK1-205ENST00000555402 FRYLO94915 3013 aa0.57□□□□□ -2.32
VRK1-205ENST00000555402 NSD1Q96L73 2696 aaPredicted RBP0.57□□□□□ -2.32
VRK1-205ENST00000555402 USP34Q70CQ2 3546 aa0.57□□□□□ -2.32
VRK1-205ENST00000555402 LINC01546A6NGU7 62 aa0.57□□□□□ -2.32
VRK1-205ENST00000555402 ALMS1Q8TCU4 4167 aa0.57□□□□□ -2.32
VRK1-205ENST00000555402 NBPF19A0A087WUL8 3843 aa0.57□□□□□ -2.32
VRK1-205ENST00000555402 FRYQ5TBA9 3013 aa0.56□□□□□ -2.32
VRK1-205ENST00000555402 GPR98Q8WXG9 6306 aa0.56□□□□□ -2.32
VRK1-205ENST00000555402 BOD1L1Q8NFC6 3051 aa0.56□□□□□ -2.32
VRK1-205ENST00000555402 LAMA3Q16787 3333 aa0.56□□□□□ -2.32
VRK1-205ENST00000555402 DNHD1Q96M86 4753 aa0.56□□□□□ -2.32
VRK1-205ENST00000555402 NFAT5O94916 1531 aa0.56□□□□□ -2.32
VRK1-205ENST00000555402 CSMD1Q96PZ7 3565 aa0.56□□□□□ -2.32
VRK1-205ENST00000555402 NF1P21359 2839 aa0.56□□□□□ -2.32
VRK1-205ENST00000555402 ITPR2Q14571 2701 aa0.56□□□□□ -2.32
VRK1-205ENST00000555402 XIRP2A4UGR9 3374 aa0.56□□□□□ -2.32
VRK1-205ENST00000555402 VPS13AQ96RL7 3174 aa0.55□□□□□ -2.32
VRK1-205ENST00000555402 PHGR1C9JFL3 82 aa0.55□□□□□ -2.32
VRK1-205ENST00000555402 DSPP15924 2871 aaKnown RBP0.55□□□□□ -2.32
VRK1-205ENST00000555402 MUC3AQ02505 3323 aa0.55□□□□□ -2.32
VRK1-205ENST00000555402 RYR3Q15413 4870 aa0.55□□□□□ -2.32
VRK1-205ENST00000555402 MXRA5Q9NR99 2828 aa0.55□□□□□ -2.32
VRK1-205ENST00000555402 DCHS1Q96JQ0 3298 aa0.55□□□□□ -2.32
VRK1-205ENST00000555402 SMG1Q96Q15 3661 aaKnown RBP0.54□□□□□ -2.32
VRK1-205ENST00000555402 TOP2AP11388 1531 aaKnown RBP0.54□□□□□ -2.32
VRK1-205ENST00000555402 COL12A1Q99715 3063 aa0.54□□□□□ -2.32
VRK1-205ENST00000555402 ZANQ9Y493 2812 aa0.54□□□□□ -2.32
VRK1-205ENST00000555402 DMBT1Q9UGM3 2413 aaPredicted RBP0.54□□□□□ -2.32
VRK1-205ENST00000555402 TFF3Q07654 80 aa0.54□□□□□ -2.32
VRK1-205ENST00000555402 NBASA2RRP1 2371 aa0.54□□□□□ -2.32
VRK1-205ENST00000555402 LRBAP50851 2863 aa0.54□□□□□ -2.32
VRK1-205ENST00000555402 CDH23Q9H251 3354 aa0.54□□□□□ -2.32
VRK1-205ENST00000555402 BIRC6Q9NR09 4857 aa0.54□□□□□ -2.32
VRK1-205ENST00000555402 AKAP13Q12802 2813 aa0.53□□□□□ -2.32
VRK1-205ENST00000555402 APC2O95996 2303 aa0.53□□□□□ -2.32
VRK1-205ENST00000555402 LOC400499M0QZD8 3231 aa0.53□□□□□ -2.32
VRK1-205ENST00000555402 CENPEQ02224 2701 aa0.53□□□□□ -2.32
VRK1-205ENST00000555402 DMXL1Q9Y485 3027 aa0.53□□□□□ -2.33
VRK1-205ENST00000555402 STAB2Q8WWQ8 2551 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 DNAH14Q0VDD8 3507 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 MYO15AQ9UKN7 3530 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 DCHS2Q6V1P9 2916 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 CHD7Q9P2D1 2997 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 FREM2Q5SZK8 3169 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 SONP18583 2426 aaKnown RBP0.52□□□□□ -2.33
VRK1-205ENST00000555402 HERC1Q15751 4861 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 SPRR2DP22532 72 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms