RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 XIRP2A4UGR9 3374 aa6.57□□□□□ -1.36
COL4A6-209ENST00000545689 APCP25054 2843 aa6.56□□□□□ -1.36
COL4A6-209ENST00000545689 NDUFAF8A1L188 74 aa6.55□□□□□ -1.36
COL4A6-209ENST00000545689 LAMA1P25391 3075 aa6.54□□□□□ -1.36
COL4A6-209ENST00000545689 NIPBLQ6KC79 2804 aaeCLIP6.53□□□□□ -1.36
COL4A6-209ENST00000545689 FLG2Q5D862 2391 aaPredicted RBP6.53□□□□□ -1.36
COL4A6-209ENST00000545689 KRTAP13-3Q3SY46 172 aa6.52□□□□□ -1.37
COL4A6-209ENST00000545689 SZT2Q5T011 3432 aa6.52□□□□□ -1.37
COL4A6-209ENST00000545689 ADGRG4Q8IZF6 3080 aa6.51□□□□□ -1.37
COL4A6-209ENST00000545689 COL12A1Q99715 3063 aa6.49□□□□□ -1.37
COL4A6-209ENST00000545689 HRNRQ86YZ3 2850 aaPredicted RBP6.49□□□□□ -1.37
COL4A6-209ENST00000545689 NBEAQ8NFP9 2946 aa6.47□□□□□ -1.37
COL4A6-209ENST00000545689 CELSR3Q9NYQ7 3312 aa6.47□□□□□ -1.37
COL4A6-209ENST00000545689 EYSQ5T1H1 3165 aa6.47□□□□□ -1.37
COL4A6-209ENST00000545689 VCANP13611 3396 aa6.46□□□□□ -1.38
COL4A6-209ENST00000545689 DNAH14Q0VDD8 3507 aa6.44□□□□□ -1.38
COL4A6-209ENST00000545689 C10orf95Q9H7T3 257 aa6.43□□□□□ -1.38
COL4A6-209ENST00000545689 COL6A3P12111 3177 aa6.43□□□□□ -1.38
COL4A6-209ENST00000545689 DMXL2Q8TDJ6 3036 aa6.43□□□□□ -1.38
COL4A6-209ENST00000545689 TACC2O95359 2948 aa6.42□□□□□ -1.38
COL4A6-209ENST00000545689 TNRC18O15417 2968 aaPredicted RBP6.42□□□□□ -1.38
COL4A6-209ENST00000545689 FRYLO94915 3013 aa6.42□□□□□ -1.38
COL4A6-209ENST00000545689 ZZEF1O43149 2961 aa6.41□□□□□ -1.38
COL4A6-209ENST00000545689 A0A1B0GVY2 172 aa6.4□□□□□ -1.38
COL4A6-209ENST00000545689 P0C880 135 aa6.4□□□□□ -1.38
COL4A6-209ENST00000545689 BOD1L1Q8NFC6 3051 aa6.4□□□□□ -1.38
COL4A6-209ENST00000545689 KRTAP10-8P60410 259 aa6.38□□□□□ -1.39
COL4A6-209ENST00000545689 SPTBN5Q9NRC6 3674 aaKnown RBP6.33□□□□□ -1.4
COL4A6-209ENST00000545689 ZANQ9Y493 2812 aa6.3□□□□□ -1.4
COL4A6-209ENST00000545689 ASH1LQ9NR48 2969 aaKnown RBP6.28□□□□□ -1.4
COL4A6-209ENST00000545689 TENM4Q6N022 2769 aa6.28□□□□□ -1.4
COL4A6-209ENST00000545689 CELSR2Q9HCU4 2923 aa6.27□□□□□ -1.41
COL4A6-209ENST00000545689 FREM2Q5SZK8 3169 aa6.27□□□□□ -1.41
COL4A6-209ENST00000545689 USP34Q70CQ2 3546 aa6.26□□□□□ -1.41
COL4A6-209ENST00000545689 DCHS2Q6V1P9 2916 aa6.24□□□□□ -1.41
COL4A6-209ENST00000545689 PRO2289Q9P1D8 64 aa6.24□□□□□ -1.41
COL4A6-209ENST00000545689 KRTAP10-10P60014 251 aa6.21□□□□□ -1.41
COL4A6-209ENST00000545689 DMXL1Q9Y485 3027 aa6.19□□□□□ -1.42
COL4A6-209ENST00000545689 KRTAP12-2P59991 146 aa6.15□□□□□ -1.42
COL4A6-209ENST00000545689 REV3LO60673 3130 aa6.15□□□□□ -1.42
COL4A6-209ENST00000545689 CRYBG3Q68DQ2 2970 aa6.12□□□□□ -1.43
COL4A6-209ENST00000545689 FBN2P35556 2912 aa6.12□□□□□ -1.43
COL4A6-209ENST00000545689 KRTAP3-1Q9BYR8 98 aa6.12□□□□□ -1.43
COL4A6-209ENST00000545689 CFAP47Q6ZTR5 3102 aa6.11□□□□□ -1.43
COL4A6-209ENST00000545689 KRTAP13-4Q3LI77 160 aa6.11□□□□□ -1.43
COL4A6-209ENST00000545689 KRTAP12-1P59990 96 aa6.09□□□□□ -1.43
COL4A6-209ENST00000545689 NF1P21359 2839 aa6.09□□□□□ -1.44
COL4A6-209ENST00000545689 TENM3Q9P273 2699 aa6.06□□□□□ -1.44
COL4A6-209ENST00000545689 PDZD2O15018 2839 aa6.05□□□□□ -1.44
COL4A6-209ENST00000545689 MXRA5Q9NR99 2828 aa6.05□□□□□ -1.44
COL4A6-209ENST00000545689 TGP01266 2768 aa6.05□□□□□ -1.44
COL4A6-209ENST00000545689 LOC400499M0QZD8 3231 aa6.02□□□□□ -1.45
COL4A6-209ENST00000545689 CELSR1Q9NYQ6 3014 aa6.02□□□□□ -1.45
COL4A6-209ENST00000545689 TENM2Q9NT68 2774 aa6□□□□□ -1.45
COL4A6-209ENST00000545689 TENM1Q9UKZ4 2725 aa5.97□□□□□ -1.45
COL4A6-209ENST00000545689 KRTAP10-6P60371 365 aaPredicted RBP5.96□□□□□ -1.46
COL4A6-209ENST00000545689 SPEGQ15772 3267 aa5.95□□□□□ -1.46
COL4A6-209ENST00000545689 ANK3Q12955 4377 aaKnown RBP5.93□□□□□ -1.46
COL4A6-209ENST00000545689 MT1HL1P0DM35 61 aa5.8□□□□□ -1.48
COL4A6-209ENST00000545689 OTOGQ6ZRI0 2925 aa5.77□□□□□ -1.49
COL4A6-209ENST00000545689 KRTAP3-2Q9BYR7 98 aa5.77□□□□□ -1.49
COL4A6-209ENST00000545689 WDFY3Q8IZQ1 3526 aa5.77□□□□□ -1.49
COL4A6-209ENST00000545689 RELNP78509 3460 aa5.76□□□□□ -1.49
COL4A6-209ENST00000545689 KRTAP3-3Q9BYR6 98 aa5.76□□□□□ -1.49
COL4A6-209ENST00000545689 KRTAP10-4P60372 401 aaPredicted RBP5.75□□□□□ -1.49
COL4A6-209ENST00000545689 MYO15AQ9UKN7 3530 aa5.74□□□□□ -1.49
COL4A6-209ENST00000545689 KRTAP15-1Q3LI76 137 aa5.7□□□□□ -1.5
COL4A6-209ENST00000545689 VWFP04275 2813 aa5.67□□□□□ -1.5
COL4A6-209ENST00000545689 ASPMQ8IZT6 3477 aa5.66□□□□□ -1.5
COL4A6-209ENST00000545689 ALMS1Q8TCU4 4167 aa5.65□□□□□ -1.5
COL4A6-209ENST00000545689 NBPF19A0A087WUL8 3843 aa5.64□□□□□ -1.51
COL4A6-209ENST00000545689 HUWE1Q7Z6Z7 4374 aaKnown RBP5.63□□□□□ -1.51
COL4A6-209ENST00000545689 DCHS1Q96JQ0 3298 aa5.61□□□□□ -1.51
COL4A6-209ENST00000545689 KRTAP23-1A1A580 65 aa5.61□□□□□ -1.51
COL4A6-209ENST00000545689 ZFHX4Q86UP3 3567 aa5.61□□□□□ -1.51
COL4A6-209ENST00000545689 FBN1P35555 2871 aaKnown RBP5.59□□□□□ -1.51
COL4A6-209ENST00000545689 PKD1L1Q8TDX9 2849 aa5.58□□□□□ -1.52
COL4A6-209ENST00000545689 INE1O15225 51 aa5.55□□□□□ -1.52
COL4A6-209ENST00000545689 CSMD1Q96PZ7 3565 aa5.54□□□□□ -1.52
COL4A6-209ENST00000545689 LAMA5O15230 3695 aa5.53□□□□□ -1.52
COL4A6-209ENST00000545689 KRTAP10-12P60413 245 aa5.52□□□□□ -1.53
COL4A6-209ENST00000545689 FBN3Q75N90 2809 aa5.52□□□□□ -1.53
COL4A6-209ENST00000545689 MEGF8Q7Z7M0 2845 aa5.51□□□□□ -1.53
COL4A6-209ENST00000545689 SMG1Q96Q15 3661 aaKnown RBP5.51□□□□□ -1.53
COL4A6-209ENST00000545689 DMDP11532 3685 aa5.43□□□□□ -1.54
COL4A6-209ENST00000545689 KRTAP4-5Q9BYR2 181 aa5.41□□□□□ -1.54
COL4A6-209ENST00000545689 BSNQ9UPA5 3926 aa5.41□□□□□ -1.54
COL4A6-209ENST00000545689 TRRAPQ9Y4A5 3859 aa5.39□□□□□ -1.55
COL4A6-209ENST00000545689 KRTAP12-3P60328 96 aa5.37□□□□□ -1.55
COL4A6-209ENST00000545689 SPENQ96T58 3664 aaKnown RBP5.33□□□□□ -1.56
COL4A6-209ENST00000545689 DNAH9Q9NYC9 4486 aa5.33□□□□□ -1.56
COL4A6-209ENST00000545689 SRRM2Q9UQ35 2752 aaKnown RBP5.31□□□□□ -1.56
COL4A6-209ENST00000545689 LCE3AQ5TA76 89 aa5.31□□□□□ -1.56
COL4A6-209ENST00000545689 DNAH2Q9P225 4427 aa5.31□□□□□ -1.56
COL4A6-209ENST00000545689 CUBNO60494 3623 aa5.31□□□□□ -1.56
COL4A6-209ENST00000545689 SVEP1Q4LDE5 3571 aa5.3□□□□□ -1.56
COL4A6-209ENST00000545689 LORP23490 312 aaPredicted RBP5.29□□□□□ -1.56
COL4A6-209ENST00000545689 ZFHX3Q15911 3703 aa5.29□□□□□ -1.56
COL4A6-209ENST00000545689 DNAH10Q8IVF4 4471 aa5.24□□□□□ -1.57
COL4A6-209ENST00000545689 CSMD2Q7Z408 3487 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms