RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 NOP10Q9NPE3 64 aaKnown RBP5.31□□□□□ -1.56
VPS13D-212ENST00000543766 VWFP04275 2813 aa5.3□□□□□ -1.56
VPS13D-212ENST00000543766 KRTAP1-1Q07627 177 aa5.3□□□□□ -1.56
VPS13D-212ENST00000543766 C15orf56Q8N910 161 aa5.3□□□□□ -1.56
VPS13D-212ENST00000543766 SRRM2Q9UQ35 2752 aaKnown RBP5.29□□□□□ -1.56
VPS13D-212ENST00000543766 SPINK1P00995 79 aa5.29□□□□□ -1.56
VPS13D-212ENST00000543766 UNQ6190/PRO20217Q6UXQ8 127 aa5.29□□□□□ -1.56
VPS13D-212ENST00000543766 IGLV7-43P04211 117 aa5.28□□□□□ -1.56
VPS13D-212ENST00000543766 KRTAP15-1Q3LI76 137 aa5.28□□□□□ -1.56
VPS13D-212ENST00000543766 Q8N377 158 aa5.28□□□□□ -1.56
VPS13D-212ENST00000543766 TYMSOSQ8TAI1 123 aa5.27□□□□□ -1.57
VPS13D-212ENST00000543766 WWC2-AS2Q96NR7 200 aa5.27□□□□□ -1.57
VPS13D-212ENST00000543766 DEFB131BA0A096LNP1 70 aa5.26□□□□□ -1.57
VPS13D-212ENST00000543766 KRTAP29-1A8MX34 341 aaPredicted RBP5.26□□□□□ -1.57
VPS13D-212ENST00000543766 LCE2AQ5TA79 106 aaPredicted RBP5.26□□□□□ -1.57
VPS13D-212ENST00000543766 A0A0G2JQZ4 141 aa5.26□□□□□ -1.57
VPS13D-212ENST00000543766 DEFB136Q30KP8 78 aa5.26□□□□□ -1.57
VPS13D-212ENST00000543766 KRTAP11-1Q8IUC1 163 aa5.25□□□□□ -1.57
VPS13D-212ENST00000543766 ALMS1Q8TCU4 4167 aa5.25□□□□□ -1.57
VPS13D-212ENST00000543766 KRTAP24-1Q3LI83 254 aa5.24□□□□□ -1.57
VPS13D-212ENST00000543766 Q6ZRX8 168 aa5.24□□□□□ -1.57
VPS13D-212ENST00000543766 IGKV2-24A0A0C4DH68 120 aa5.24□□□□□ -1.57
VPS13D-212ENST00000543766 PSORS1C2Q9UIG4 136 aa5.23□□□□□ -1.57
VPS13D-212ENST00000543766 FBN3Q75N90 2809 aa5.21□□□□□ -1.57
VPS13D-212ENST00000543766 PRLHP81277 87 aa5.2□□□□□ -1.58
VPS13D-212ENST00000543766 C10orf95Q9H7T3 257 aa5.19□□□□□ -1.58
VPS13D-212ENST00000543766 Q8N1X5 172 aa5.18□□□□□ -1.58
VPS13D-212ENST00000543766 KRTAP23-1A1A580 65 aa5.17□□□□□ -1.58
VPS13D-212ENST00000543766 CSMD3Q7Z407 3707 aa5.17□□□□□ -1.58
VPS13D-212ENST00000543766 DNAH7Q8WXX0 4024 aa5.16□□□□□ -1.58
VPS13D-212ENST00000543766 A0A096LNI7 61 aa5.16□□□□□ -1.58
VPS13D-212ENST00000543766 TP53AIP1Q9HCN2 124 aa5.16□□□□□ -1.58
VPS13D-212ENST00000543766 SPRR1AP35321 89 aa5.15□□□□□ -1.58
VPS13D-212ENST00000543766 LELP1Q5T871 98 aa5.15□□□□□ -1.58
VPS13D-212ENST00000543766 R4GN34 69 aa5.15□□□□□ -1.58
VPS13D-212ENST00000543766 C14orf177Q52M58 125 aa5.14□□□□□ -1.59
VPS13D-212ENST00000543766 PRO0255Q9UI72 69 aa5.14□□□□□ -1.59
VPS13D-212ENST00000543766 KRTAP10-3P60369 221 aa5.13□□□□□ -1.59
VPS13D-212ENST00000543766 LYSTQ99698 3801 aa5.13□□□□□ -1.59
VPS13D-212ENST00000543766 MEGF8Q7Z7M0 2845 aa5.12□□□□□ -1.59
VPS13D-212ENST00000543766 A0A096LPF7 62 aa5.11□□□□□ -1.59
VPS13D-212ENST00000543766 DYNC2H1Q8NCM8 4307 aaKnown RBP5.1□□□□□ -1.59
VPS13D-212ENST00000543766 A0A1B0GU33 70 aa5.09□□□□□ -1.6
VPS13D-212ENST00000543766 DNAH1Q9P2D7 4330 aa5.09□□□□□ -1.6
VPS13D-212ENST00000543766 DEFB130BP0DP73 79 aa5.08□□□□□ -1.6
VPS13D-212ENST00000543766 DEFB130AP0DP74 79 aa5.08□□□□□ -1.6
VPS13D-212ENST00000543766 IGFL1Q6UW32 110 aa5.08□□□□□ -1.6
VPS13D-212ENST00000543766 TPRXLQ17RH7 258 aa5.07□□□□□ -1.6
VPS13D-212ENST00000543766 TENM2Q9NT68 2774 aa5.06□□□□□ -1.6
VPS13D-212ENST00000543766 LY6G6CO95867 125 aa5.06□□□□□ -1.6
VPS13D-212ENST00000543766 MMP24-AS1A0A0U1RRL7 71 aa5.05□□□□□ -1.6
VPS13D-212ENST00000543766 KRTAP7-1Q8IUC3 87 aa5.05□□□□□ -1.6
VPS13D-212ENST00000543766 DNAH6Q9C0G6 4158 aa5.05□□□□□ -1.6
VPS13D-212ENST00000543766 K7EIL1 84 aa5.04□□□□□ -1.6
VPS13D-212ENST00000543766 PRKDCP78527 4128 aaKnown RBP5.03□□□□□ -1.6
VPS13D-212ENST00000543766 STAB2Q8WWQ8 2551 aa5.02□□□□□ -1.61
VPS13D-212ENST00000543766 APLNQ9ULZ1 77 aa5.01□□□□□ -1.61
VPS13D-212ENST00000543766 TENM3Q9P273 2699 aa5□□□□□ -1.61
VPS13D-212ENST00000543766 H0YAA0 97 aa5□□□□□ -1.61
VPS13D-212ENST00000543766 SPACA4Q8TDM5 124 aa4.98□□□□□ -1.61
VPS13D-212ENST00000543766 MRPL34Q9BQ48 92 aaKnown RBP4.98□□□□□ -1.61
VPS13D-212ENST00000543766 A0A0D9SG42 100 aa4.97□□□□□ -1.61
VPS13D-212ENST00000543766 UBE2DNLQ8IWF7 75 aa4.96□□□□□ -1.61
VPS13D-212ENST00000543766 H3BNG1 76 aa4.95□□□□□ -1.62
VPS13D-212ENST00000543766 SPRR1BP22528 89 aa4.95□□□□□ -1.62
VPS13D-212ENST00000543766 DEFB135Q30KP9 77 aa4.95□□□□□ -1.62
VPS13D-212ENST00000543766 SPART-AS1P0CW21 52 aa4.95□□□□□ -1.62
VPS13D-212ENST00000543766 KRTAP13-3Q3SY46 172 aa4.95□□□□□ -1.62
VPS13D-212ENST00000543766 Q6ZSA8 131 aa4.95□□□□□ -1.62
VPS13D-212ENST00000543766 COL7A1Q02388 2944 aa4.94□□□□□ -1.62
VPS13D-212ENST00000543766 DNAH9Q9NYC9 4486 aa4.93□□□□□ -1.62
VPS13D-212ENST00000543766 IGKV2D-30A0A075B6S6 120 aa4.92□□□□□ -1.62
VPS13D-212ENST00000543766 IGKV2-30P06310 120 aa4.92□□□□□ -1.62
VPS13D-212ENST00000543766 SPINK6Q6UWN8 80 aa4.92□□□□□ -1.62
VPS13D-212ENST00000543766 PRO2289Q9P1D8 64 aa4.91□□□□□ -1.62
VPS13D-212ENST00000543766 KRTAP10-11P60412 298 aa4.9□□□□□ -1.63
VPS13D-212ENST00000543766 FRAS1Q86XX4 4008 aa4.9□□□□□ -1.63
VPS13D-212ENST00000543766 PLAC4Q8WY50 150 aa4.89□□□□□ -1.63
VPS13D-212ENST00000543766 DEFB4AO15263 64 aa4.89□□□□□ -1.63
VPS13D-212ENST00000543766 LORP23490 312 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-212ENST00000543766 RYR3Q15413 4870 aa4.86□□□□□ -1.63
VPS13D-212ENST00000543766 HECTD4Q9Y4D8 3996 aa4.86□□□□□ -1.63
VPS13D-212ENST00000543766 HTN3P15516 51 aa4.85□□□□□ -1.63
VPS13D-212ENST00000543766 LINC01556Q5JQF7 62 aa4.85□□□□□ -1.63
VPS13D-212ENST00000543766 H1FX-AS1Q4G0G2 97 aa4.84□□□□□ -1.63
VPS13D-212ENST00000543766 RPL37P61927 97 aaKnown RBP4.83□□□□□ -1.64
VPS13D-212ENST00000543766 RYR2Q92736 4967 aa4.82□□□□□ -1.64
VPS13D-212ENST00000543766 DNAH10Q8IVF4 4471 aa4.82□□□□□ -1.64
VPS13D-212ENST00000543766 FAT2Q9NYQ8 4349 aa4.8□□□□□ -1.64
VPS13D-212ENST00000543766 SACSQ9NZJ4 4579 aa4.79□□□□□ -1.64
VPS13D-212ENST00000543766 HUWE1Q7Z6Z7 4374 aaKnown RBP4.79□□□□□ -1.64
VPS13D-212ENST00000543766 KMT2CQ8NEZ4 4911 aaKnown RBP4.78□□□□□ -1.64
VPS13D-212ENST00000543766 KRTAP13-1Q8IUC0 172 aa4.77□□□□□ -1.65
VPS13D-212ENST00000543766 DNAH17Q9UFH2 4485 aa4.73□□□□□ -1.65
VPS13D-212ENST00000543766 VPS13DQ5THJ4 4388 aa4.72□□□□□ -1.65
VPS13D-212ENST00000543766 STARD9Q9P2P6 4700 aa4.7□□□□□ -1.66
VPS13D-212ENST00000543766 DNAH8Q96JB1 4490 aa4.68□□□□□ -1.66
VPS13D-212ENST00000543766 HYDINQ4G0P3 5121 aa4.68□□□□□ -1.66
VPS13D-212ENST00000543766 KRTAP10-8P60410 259 aa4.67□□□□□ -1.66
VPS13D-212ENST00000543766 COX6B2Q6YFQ2 88 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms