RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 SPINK6Q6UWN8 80 aa1.43□□□□□ -2.18
USP28-210ENST00000542033 AKAP9Q99996 3911 aa1.42□□□□□ -2.18
USP28-210ENST00000542033 CNOT1A5YKK6 2376 aaKnown RBP1.42□□□□□ -2.18
USP28-210ENST00000542033 TPRP12270 2363 aaKnown RBP1.42□□□□□ -2.18
USP28-210ENST00000542033 CELSR1Q9NYQ6 3014 aa1.42□□□□□ -2.18
USP28-210ENST00000542033 PTPRZ1P23471 2315 aaPredicted RBP1.42□□□□□ -2.18
USP28-210ENST00000542033 SPINK1P00995 79 aa1.42□□□□□ -2.18
USP28-210ENST00000542033 C10orf95Q9H7T3 257 aa1.42□□□□□ -2.18
USP28-210ENST00000542033 ASH1LQ9NR48 2969 aaKnown RBP1.42□□□□□ -2.18
USP28-210ENST00000542033 OTOGQ6ZRI0 2925 aa1.42□□□□□ -2.18
USP28-210ENST00000542033 MYO15AQ9UKN7 3530 aa1.41□□□□□ -2.18
USP28-210ENST00000542033 CRYBG3Q68DQ2 2970 aa1.41□□□□□ -2.18
USP28-210ENST00000542033 ANKRD17O75179 2603 aaKnown RBP1.41□□□□□ -2.18
USP28-210ENST00000542033 DCHS2Q6V1P9 2916 aa1.41□□□□□ -2.18
USP28-210ENST00000542033 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.4□□□□□ -2.188e-9■■■■□ 25.3
USP28-210ENST00000542033 RP1L1Q8IWN7 2480 aaPredicted RBP1.4□□□□□ -2.19
USP28-210ENST00000542033 ACACAQ13085 2346 aa1.4□□□□□ -2.19
USP28-210ENST00000542033 AKAP6Q13023 2319 aa1.39□□□□□ -2.19
USP28-210ENST00000542033 LAMA5O15230 3695 aa1.39□□□□□ -2.19
USP28-210ENST00000542033 RELNP78509 3460 aa1.39□□□□□ -2.19
USP28-210ENST00000542033 KRTAP12-4P60329 112 aa1.39□□□□□ -2.19
USP28-210ENST00000542033 ASPMQ8IZT6 3477 aa1.39□□□□□ -2.19
USP28-210ENST00000542033 NBPF19A0A087WUL8 3843 aa1.38□□□□□ -2.19
USP28-210ENST00000542033 ADGRG4Q8IZF6 3080 aa1.38□□□□□ -2.19
USP28-210ENST00000542033 APLNQ9ULZ1 77 aa1.38□□□□□ -2.19
USP28-210ENST00000542033 S4R3F8 94 aa1.38□□□□□ -2.19
USP28-210ENST00000542033 FN1P02751 2386 aaKnown RBP1.38□□□□□ -2.19
USP28-210ENST00000542033 ZFHX2Q9C0A1 2572 aaPredicted RBP1.38□□□□□ -2.19
USP28-210ENST00000542033 KRTAP6-3Q3LI67 103 aa1.37□□□□□ -2.19
USP28-210ENST00000542033 ITPR1Q14643 2758 aa1.37□□□□□ -2.19
USP28-210ENST00000542033 NCOR2Q9Y618 2525 aa1.37□□□□□ -2.19
USP28-210ENST00000542033 EYSQ5T1H1 3165 aa1.37□□□□□ -2.19
USP28-210ENST00000542033 ABCA2Q9BZC7 2435 aa1.36□□□□□ -2.19
USP28-210ENST00000542033 SPTBN4Q9H254 2564 aa1.36□□□□□ -2.19
USP28-210ENST00000542033 SPTA1P02549 2419 aa1.36□□□□□ -2.19
USP28-210ENST00000542033 BAHCC1Q9P281 2608 aa1.35□□□□□ -2.19
USP28-210ENST00000542033 ANKHD1Q8IWZ3 2542 aaKnown RBP1.35□□□□□ -2.19
USP28-210ENST00000542033 HRNRQ86YZ3 2850 aaPredicted RBP1.35□□□□□ -2.19
USP28-210ENST00000542033 VPS13CQ709C8 3753 aa1.35□□□□□ -2.19
USP28-210ENST00000542033 CACNA1HO95180 2353 aa1.35□□□□□ -2.19
USP28-210ENST00000542033 SPG11Q96JI7 2443 aa1.35□□□□□ -2.19
USP28-210ENST00000542033 ZDBF2Q9HCK1 2354 aa1.34□□□□□ -2.19
USP28-210ENST00000542033 KRTAP21-2Q3LI59 83 aa1.34□□□□□ -2.19
USP28-210ENST00000542033 KRTAP13-4Q3LI77 160 aa1.34□□□□□ -2.19
USP28-210ENST00000542033 CSPG4Q6UVK1 2322 aa1.34□□□□□ -2.2
USP28-210ENST00000542033 APCP25054 2843 aa1.34□□□□□ -2.2
USP28-210ENST00000542033 NBASA2RRP1 2371 aa1.33□□□□□ -2.2
USP28-210ENST00000542033 Q5VSD8 79 aa1.33□□□□□ -2.2
USP28-210ENST00000542033 SPTAN1Q13813 2472 aaKnown RBP1.33□□□□□ -2.2
USP28-210ENST00000542033 FLG2Q5D862 2391 aaPredicted RBP1.33□□□□□ -2.2
USP28-210ENST00000542033 BSNQ9UPA5 3926 aa1.33□□□□□ -2.2
USP28-210ENST00000542033 NCOR1O75376 2440 aa1.32□□□□□ -2.2
USP28-210ENST00000542033 SVEP1Q4LDE5 3571 aa1.32□□□□□ -2.2
USP28-210ENST00000542033 A0A0D9SG42 100 aa1.32□□□□□ -2.2
USP28-210ENST00000542033 M0QZ58 72 aa1.32□□□□□ -2.2
USP28-210ENST00000542033 RPS29P62273 56 aaKnown RBP1.32□□□□□ -2.2
USP28-210ENST00000542033 UBR5O95071 2799 aaPredicted RBP1.32□□□□□ -2.2
USP28-210ENST00000542033 TEX15Q9BXT5 2789 aa1.32□□□□□ -2.2
USP28-210ENST00000542033 CSMD2Q7Z408 3487 aa1.32□□□□□ -2.2
USP28-210ENST00000542033 J3QKU1 62 aa1.31□□□□□ -2.2
USP28-210ENST00000542033 KRTAP12-1P59990 96 aa1.31□□□□□ -2.2
USP28-210ENST00000542033 C2CD3Q4AC94 2353 aa1.31□□□□□ -2.2
USP28-210ENST00000542033 IGF2RP11717 2491 aa1.31□□□□□ -2.2
USP28-210ENST00000542033 NF1P21359 2839 aa1.3□□□□□ -2.2
USP28-210ENST00000542033 OTOGLQ3ZCN5 2332 aa1.3□□□□□ -2.2
USP28-210ENST00000542033 CEP290O15078 2479 aa1.3□□□□□ -2.2
USP28-210ENST00000542033 UTP20O75691 2785 aaKnown RBP1.3□□□□□ -2.2
USP28-210ENST00000542033 VWFP04275 2813 aa1.3□□□□□ -2.2
USP28-210ENST00000542033 MUC3AQ02505 3323 aa1.29□□□□□ -2.2
USP28-210ENST00000542033 PTPN13Q12923 2485 aa1.29□□□□□ -2.2
USP28-210ENST00000542033 CREBBPQ92793 2442 aa1.28□□□□□ -2.2
USP28-210ENST00000542033 FBN1P35555 2871 aaKnown RBP1.27□□□□□ -2.21
USP28-210ENST00000542033 MXRA5Q9NR99 2828 aa1.27□□□□□ -2.21
USP28-210ENST00000542033 SETXQ7Z333 2677 aaKnown RBP1.27□□□□□ -2.21
USP28-210ENST00000542033 FRAS1Q86XX4 4008 aa1.27□□□□□ -2.21
USP28-210ENST00000542033 GVINP1Q7Z2Y8 2422 aa1.27□□□□□ -2.21
USP28-210ENST00000542033 MEGF8Q7Z7M0 2845 aa1.26□□□□□ -2.21
USP28-210ENST00000542033 TENM4Q6N022 2769 aa1.26□□□□□ -2.21
USP28-210ENST00000542033 SRRM2Q9UQ35 2752 aaKnown RBP1.26□□□□□ -2.21
USP28-210ENST00000542033 COL6A5A8TX70 2615 aa1.26□□□□□ -2.21
USP28-210ENST00000542033 CEP295Q9C0D2 2601 aa1.26□□□□□ -2.21
USP28-210ENST00000542033 CUBNO60494 3623 aa1.26□□□□□ -2.21
USP28-210ENST00000542033 TRRAPQ9Y4A5 3859 aa1.25□□□□□ -2.21
USP28-210ENST00000542033 PDZD2O15018 2839 aa1.25□□□□□ -2.21
USP28-210ENST00000542033 NBEAL2Q6ZNJ1 2754 aa1.25□□□□□ -2.21
USP28-210ENST00000542033 TLN1Q9Y490 2541 aaKnown RBP1.25□□□□□ -2.21
USP28-210ENST00000542033 CSMD3Q7Z407 3707 aa1.24□□□□□ -2.21
USP28-210ENST00000542033 TLN2Q9Y4G6 2542 aa1.24□□□□□ -2.21
USP28-210ENST00000542033 FAM208BQ5VWN6 2430 aa1.24□□□□□ -2.21
USP28-210ENST00000542033 CENPEQ02224 2701 aa1.24□□□□□ -2.21
USP28-210ENST00000542033 ANK2Q01484 3957 aa1.24□□□□□ -2.21
USP28-210ENST00000542033 HIVEP3Q5T1R4 2406 aa1.23□□□□□ -2.21
USP28-210ENST00000542033 ANKRD11Q6UB99 2663 aaPredicted RBP1.23□□□□□ -2.21
USP28-210ENST00000542033 GCN1Q92616 2671 aaKnown RBP1.22□□□□□ -2.21
USP28-210ENST00000542033 BDP1A6H8Y1 2624 aa1.22□□□□□ -2.21
USP28-210ENST00000542033 ANK3Q12955 4377 aaKnown RBP1.22□□□□□ -2.21
USP28-210ENST00000542033 USP9XQ93008 2570 aaPredicted RBP1.22□□□□□ -2.21
USP28-210ENST00000542033 DOPEY1Q5JWR5 2465 aa1.22□□□□□ -2.21
USP28-210ENST00000542033 FBN2P35556 2912 aa1.22□□□□□ -2.21
USP28-210ENST00000542033 KRTAP21-3Q3LHN1 58 aa1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms