RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 KRTAP9-7A8MTY7 169 aa4.79□□□□□ -1.64
CLSTN3-212ENST00000541770 VPS25Q9BRG1 176 aa4.79□□□□□ -1.64
CLSTN3-212ENST00000541770 LOC110117498A0A087WWA1 95 aa4.78□□□□□ -1.64
CLSTN3-212ENST00000541770 PDE6GP18545 87 aa4.78□□□□□ -1.64
CLSTN3-212ENST00000541770 C21orf62-AS1Q17RA5 79 aa4.78□□□□□ -1.64
CLSTN3-212ENST00000541770 ACYP1P07311 99 aa4.77□□□□□ -1.65
CLSTN3-212ENST00000541770 MT1HP80294 61 aa4.77□□□□□ -1.65
CLSTN3-212ENST00000541770 Q6ZQT0 140 aa4.77□□□□□ -1.65
CLSTN3-212ENST00000541770 A0A1B0GW54 56 aa4.76□□□□□ -1.65
CLSTN3-212ENST00000541770 Q96NJ1 140 aa4.75□□□□□ -1.65
CLSTN3-212ENST00000541770 FAM240AA0A1B0GVK7 77 aa4.74□□□□□ -1.65
CLSTN3-212ENST00000541770 M0R2T5 61 aa4.74□□□□□ -1.65
CLSTN3-212ENST00000541770 XP32Q5T750 250 aa4.74□□□□□ -1.65
CLSTN3-212ENST00000541770 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.73□□□□□ -1.65
CLSTN3-212ENST00000541770 KRTAP10-6P60371 365 aaPredicted RBP4.72□□□□□ -1.65
CLSTN3-212ENST00000541770 KRTAP19-2Q3LHN2 52 aa4.72□□□□□ -1.65
CLSTN3-212ENST00000541770 PCOTHQ58A44 107 aa4.72□□□□□ -1.65
CLSTN3-212ENST00000541770 LINC00472Q9H8W2 130 aa4.72□□□□□ -1.65
CLSTN3-212ENST00000541770 C9orf92A6NGG3 77 aa4.7□□□□□ -1.66
CLSTN3-212ENST00000541770 IGKV4-1P06312 121 aa4.69□□□□□ -1.66
CLSTN3-212ENST00000541770 LINC00846Q9NV44 126 aa4.69□□□□□ -1.66
CLSTN3-212ENST00000541770 J3KT08 172 aa4.68□□□□□ -1.66
CLSTN3-212ENST00000541770 SIGMAR1Q99720 223 aa4.68□□□□□ -1.66
CLSTN3-212ENST00000541770 COX6B2Q6YFQ2 88 aa4.67□□□□□ -1.66
CLSTN3-212ENST00000541770 LINC00643Q86TS7 51 aa4.67□□□□□ -1.66
CLSTN3-212ENST00000541770 UBL5Q9BZL1 73 aa4.67□□□□□ -1.66
CLSTN3-212ENST00000541770 NREPQ16612 68 aa4.66□□□□□ -1.66
CLSTN3-212ENST00000541770 DEFB116Q30KQ4 102 aa4.66□□□□□ -1.66
CLSTN3-212ENST00000541770 Q6ZVQ6 151 aa4.65□□□□□ -1.67
CLSTN3-212ENST00000541770 A0A1B0GVX0 72 aa4.64□□□□□ -1.67
CLSTN3-212ENST00000541770 RPL37P61927 97 aaKnown RBP4.64□□□□□ -1.67
CLSTN3-212ENST00000541770 IGKV3D-7A0A0C4DH55 119 aa4.63□□□□□ -1.67
CLSTN3-212ENST00000541770 C8orf87E5RJ46 101 aa4.63□□□□□ -1.67
CLSTN3-212ENST00000541770 LINC00313P59037 77 aa4.63□□□□□ -1.67
CLSTN3-212ENST00000541770 ATP5EP2Q5VTU8 51 aa4.63□□□□□ -1.67
CLSTN3-212ENST00000541770 Q75L30 129 aa4.63□□□□□ -1.67
CLSTN3-212ENST00000541770 IGHV6-1A0A0B4J1U7 121 aa4.62□□□□□ -1.67
CLSTN3-212ENST00000541770 A8MWP4 228 aa4.62□□□□□ -1.67
CLSTN3-212ENST00000541770 NDUFB1O75438 58 aa4.62□□□□□ -1.67
CLSTN3-212ENST00000541770 MT-ATP8P03928 68 aa4.62□□□□□ -1.67
CLSTN3-212ENST00000541770 DSCR10P59022 87 aa4.62□□□□□ -1.67
CLSTN3-212ENST00000541770 C20orf166-AS1Q96NR2 134 aa4.62□□□□□ -1.67
CLSTN3-212ENST00000541770 A8MUU9 505 aa4.61□□□□□ -1.67
CLSTN3-212ENST00000541770 KRTAP16-1A8MUX0 517 aa4.6□□□□□ -1.67
CLSTN3-212ENST00000541770 BPY2O14599 106 aa4.6□□□□□ -1.67
CLSTN3-212ENST00000541770 NOTCH2NLQ7Z3S9 236 aa4.6□□□□□ -1.67
CLSTN3-212ENST00000541770 IMUPQ9GZP8 106 aa4.6□□□□□ -1.67
CLSTN3-212ENST00000541770 CXCL6P80162 114 aa4.59□□□□□ -1.67
CLSTN3-212ENST00000541770 PRR15Q8IV56 129 aa4.59□□□□□ -1.67
CLSTN3-212ENST00000541770 H3BS24 57 aa4.58□□□□□ -1.68
CLSTN3-212ENST00000541770 HIST1H4AP62805 103 aaKnown RBP4.58□□□□□ -1.68
CLSTN3-212ENST00000541770 Q8N9L7 120 aa4.58□□□□□ -1.68
CLSTN3-212ENST00000541770 ATP11AUNQ6ZP68 121 aa4.57□□□□□ -1.68
CLSTN3-212ENST00000541770 C8orf17Q9NRJ1 99 aa4.57□□□□□ -1.68
CLSTN3-212ENST00000541770 SCGB1A1P11684 91 aa4.56□□□□□ -1.68
CLSTN3-212ENST00000541770 K7EQZ3 153 aa4.55□□□□□ -1.68
CLSTN3-212ENST00000541770 A0A087WVE0 104 aa4.54□□□□□ -1.68
CLSTN3-212ENST00000541770 MMP24-AS1A0A0U1RRL7 71 aa4.54□□□□□ -1.68
CLSTN3-212ENST00000541770 Q8N9P0 234 aaPredicted RBP4.54□□□□□ -1.68
CLSTN3-212ENST00000541770 hDV103S1A0JD37 113 aa4.52□□□□□ -1.69
CLSTN3-212ENST00000541770 TMEM254Q8TBM7 123 aa4.52□□□□□ -1.69
CLSTN3-212ENST00000541770 MRPL34Q9BQ48 92 aaKnown RBP4.51□□□□□ -1.69
CLSTN3-212ENST00000541770 FLGP20930 4061 aaPredicted RBP4.49□□□□□ -1.69
CLSTN3-212ENST00000541770 FAM236AA0A1B0GUQ0 79 aa4.49□□□□□ -1.69
CLSTN3-212ENST00000541770 FAM236BA0A1B0GV22 79 aa4.49□□□□□ -1.69
CLSTN3-212ENST00000541770 CASC2Q6XLA1 102 aa4.48□□□□□ -1.69
CLSTN3-212ENST00000541770 WFDC13Q8IUB5 93 aa4.48□□□□□ -1.69
CLSTN3-212ENST00000541770 ZCCHC13Q8WW36 166 aaKnown RBP4.48□□□□□ -1.69
CLSTN3-212ENST00000541770 HCG22E2RYF7 251 aa4.47□□□□□ -1.69
CLSTN3-212ENST00000541770 ATOX1O00244 68 aa4.46□□□□□ -1.7
CLSTN3-212ENST00000541770 ANAPC13Q9BS18 74 aa4.46□□□□□ -1.7
CLSTN3-212ENST00000541770 KRTAP9-8Q9BYQ0 159 aa4.45□□□□□ -1.7
CLSTN3-212ENST00000541770 SSPOA2VEC9 5147 aa4.45□□□□□ -1.7
CLSTN3-212ENST00000541770 NDUFS5O43920 106 aa4.44□□□□□ -1.7
CLSTN3-212ENST00000541770 PCP4P48539 62 aa4.44□□□□□ -1.7
CLSTN3-212ENST00000541770 KRTAP19-1Q8IUB9 90 aa4.44□□□□□ -1.7
CLSTN3-212ENST00000541770 SMIM20Q8N5G0 67 aa4.44□□□□□ -1.7
CLSTN3-212ENST00000541770 USH2AO75445 5202 aa4.43□□□□□ -1.7
CLSTN3-212ENST00000541770 FCGBPQ9Y6R7 5405 aaPredicted RBP4.41□□□□□ -1.7
CLSTN3-212ENST00000541770 TRAV7A0A075B6U4 112 aa4.4□□□□□ -1.71
CLSTN3-212ENST00000541770 SPINK7P58062 85 aa4.4□□□□□ -1.71
CLSTN3-212ENST00000541770 SERP2Q8N6R1 65 aa4.4□□□□□ -1.71
CLSTN3-212ENST00000541770 HRES1P13985 223 aa4.39□□□□□ -1.71
CLSTN3-212ENST00000541770 Q5W150 140 aa4.39□□□□□ -1.71
CLSTN3-212ENST00000541770 MPLKIPQ8TAP9 179 aa4.39□□□□□ -1.71
CLSTN3-212ENST00000541770 TP53AIP1Q9HCN2 124 aa4.39□□□□□ -1.71
CLSTN3-212ENST00000541770 COX7CP15954 63 aa4.38□□□□□ -1.71
CLSTN3-212ENST00000541770 MT2AP02795 61 aa4.37□□□□□ -1.71
CLSTN3-212ENST00000541770 RBM12B-AS1Q9P1G2 102 aa4.37□□□□□ -1.71
CLSTN3-212ENST00000541770 UQCRQO14949 82 aa4.36□□□□□ -1.71
CLSTN3-212ENST00000541770 OCR1Q9BZK8 76 aa4.36□□□□□ -1.71
CLSTN3-212ENST00000541770 FAM236DA0A1B0GTK5 79 aa4.35□□□□□ -1.71
CLSTN3-212ENST00000541770 FAM236CP0DP71 79 aa4.35□□□□□ -1.71
CLSTN3-212ENST00000541770 KRTAP10-10P60014 251 aa4.35□□□□□ -1.71
CLSTN3-212ENST00000541770 C7orf65Q6ZTY9 151 aa4.35□□□□□ -1.71
CLSTN3-212ENST00000541770 SYNE2Q8WXH0 6885 aaKnown RBP4.34□□□□□ -1.71
CLSTN3-212ENST00000541770 MT1FP04733 61 aa4.34□□□□□ -1.71
CLSTN3-212ENST00000541770 C5orf47Q569G3 176 aa4.34□□□□□ -1.71
CLSTN3-212ENST00000541770 IGKV2D-30A0A075B6S6 120 aa4.32□□□□□ -1.72
CLSTN3-212ENST00000541770 CCDC179H3BU77 68 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms