RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 LRP1BQ9NZR2 4599 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 IGLV1-50A0A075B6I6 118 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 TRAV23DV6A0A075B6W5 121 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 TRBV10-2A0A0K0K1G8 114 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 A0A1W2PNN7 141 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 A6NED7 52 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 C16orf90A8MZG2 172 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 PANO1I0J062 215 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 IGLV6-57P01721 117 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 ATXN8Q156A1 80 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 LUZP6Q538Z0 58 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 SDIM1Q6ZPB5 146 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 SPTSSBQ8NFR3 76 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 LINC00167Q96N53 147 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 MYCBP2O75592 4640 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 FSIP2Q5CZC0 6907 aa2.6□□□□□ -1.99
CD44-226ENST00000527889 KLKP1Q107X0 134 aa2.59□□□□□ -1.99
CD44-226ENST00000527889 CASC2Q6XLA1 102 aa2.59□□□□□ -1.99
CD44-226ENST00000527889 CAMK2N1Q7Z7J9 78 aa2.59□□□□□ -1.99
CD44-226ENST00000527889 KRTAP2-2Q9BYT5 123 aa2.59□□□□□ -1.99
CD44-226ENST00000527889 CYP4F30PQ9H0H9 118 aa2.59□□□□□ -1.99
CD44-226ENST00000527889 C8orf17Q9NRJ1 99 aa2.59□□□□□ -1.99
CD44-226ENST00000527889 LINC00474Q9P2X8 69 aa2.59□□□□□ -1.99
CD44-226ENST00000527889 C22orf24Q9Y442 160 aa2.59□□□□□ -1.99
CD44-226ENST00000527889 VPS13BQ7Z7G8 4022 aa2.59□□□□□ -2
CD44-226ENST00000527889 KRTAP4-16G5E9R7 235 aaPredicted RBP2.58□□□□□ -2
CD44-226ENST00000527889 H0YGX0 51 aa2.58□□□□□ -2
CD44-226ENST00000527889 H7BZZ5 65 aa2.58□□□□□ -2
CD44-226ENST00000527889 COX7BP24311 80 aa2.58□□□□□ -2
CD44-226ENST00000527889 ATP5EP2Q5VTU8 51 aa2.58□□□□□ -2
CD44-226ENST00000527889 APOBP04114 4563 aaKnown RBP2.57□□□□□ -2
CD44-226ENST00000527889 DNAL4O96015 105 aa2.57□□□□□ -2
CD44-226ENST00000527889 KRTAP11-1Q8IUC1 163 aa2.57□□□□□ -2
CD44-226ENST00000527889 C20orf197Q8N268 126 aa2.57□□□□□ -2
CD44-226ENST00000527889 SPACA4Q8TDM5 124 aa2.57□□□□□ -2
CD44-226ENST00000527889 CYSTM1Q9H1C7 97 aa2.57□□□□□ -2
CD44-226ENST00000527889 KCNQ1DNQ9H478 68 aa2.57□□□□□ -2
CD44-226ENST00000527889 ETDCA0A1B0GVM5 59 aa2.56□□□□□ -2
CD44-226ENST00000527889 BAALC-AS2P0C853 105 aa2.56□□□□□ -2
CD44-226ENST00000527889 ELOF1P60002 83 aaKnown RBP2.56□□□□□ -2
CD44-226ENST00000527889 KRTAP10-1P60331 282 aa2.56□□□□□ -2
CD44-226ENST00000527889 HAMPP81172 84 aa2.56□□□□□ -2
CD44-226ENST00000527889 LINC00575Q6W349 94 aa2.56□□□□□ -2
CD44-226ENST00000527889 TYMSOSQ8TAI1 123 aa2.56□□□□□ -2
CD44-226ENST00000527889 TRAV7A0A075B6U4 112 aa2.55□□□□□ -2
CD44-226ENST00000527889 HCG22E2RYF7 251 aa2.55□□□□□ -2
CD44-226ENST00000527889 F8WEM9 126 aa2.55□□□□□ -2
CD44-226ENST00000527889 SPRR1AP35321 89 aa2.55□□□□□ -2
CD44-226ENST00000527889 PRLHP81277 87 aa2.55□□□□□ -2
CD44-226ENST00000527889 Q6JHZ5 121 aa2.55□□□□□ -2
CD44-226ENST00000527889 Q6ZQY7 126 aa2.55□□□□□ -2
CD44-226ENST00000527889 Q9BRP9 147 aa2.55□□□□□ -2
CD44-226ENST00000527889 ORMDL1Q9P0S3 153 aa2.55□□□□□ -2
CD44-226ENST00000527889 TEX49A0A1B0GTD5 131 aa2.54□□□□□ -2
CD44-226ENST00000527889 A8MWP4 228 aa2.54□□□□□ -2
CD44-226ENST00000527889 BPY2O14599 106 aa2.54□□□□□ -2
CD44-226ENST00000527889 ERC2-IT1O76042 136 aa2.54□□□□□ -2
CD44-226ENST00000527889 Q6ZRX8 168 aa2.54□□□□□ -2
CD44-226ENST00000527889 SMCR5Q8TEV8 140 aa2.54□□□□□ -2
CD44-226ENST00000527889 LIMD2Q9BT23 127 aa2.54□□□□□ -2
CD44-226ENST00000527889 C14orf132Q9NPU4 83 aa2.54□□□□□ -2
CD44-226ENST00000527889 CDC42SE1Q9NRR8 79 aa2.54□□□□□ -2
CD44-226ENST00000527889 PLAC8Q9NZF1 115 aa2.54□□□□□ -2
CD44-226ENST00000527889 FAT1Q14517 4588 aa2.53□□□□□ -2
CD44-226ENST00000527889 PKHD1L1Q86WI1 4243 aa2.53□□□□□ -2
CD44-226ENST00000527889 A0A1B0GVY2 172 aa2.53□□□□□ -2
CD44-226ENST00000527889 ST20-AS1Q8NBB2 130 aa2.53□□□□□ -2
CD44-226ENST00000527889 DEFB105AQ8NG35 78 aa2.53□□□□□ -2
CD44-226ENST00000527889 CIRBP-AS1Q8TBR5 109 aa2.53□□□□□ -2
CD44-226ENST00000527889 HIGD2AQ9BW72 106 aa2.53□□□□□ -2
CD44-226ENST00000527889 PSORS1C2Q9UIG4 136 aa2.53□□□□□ -2
CD44-226ENST00000527889 CHKB-CPT1BH3BT56 60 aa2.52□□□□□ -2.01
CD44-226ENST00000527889 C1orf137Q5JT78 98 aa2.52□□□□□ -2.01
CD44-226ENST00000527889 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.52□□□□□ -2.01
CD44-226ENST00000527889 Q6ZSA8 131 aa2.52□□□□□ -2.01
CD44-226ENST00000527889 TRAV22A0A0B4J277 110 aa2.51□□□□□ -2.01
CD44-226ENST00000527889 ADM2Q7Z4H4 148 aa2.51□□□□□ -2.01
CD44-226ENST00000527889 KRTAP13-1Q8IUC0 172 aa2.51□□□□□ -2.01
CD44-226ENST00000527889 A0A1B0GVX0 72 aa2.5□□□□□ -2.01
CD44-226ENST00000527889 ROMO1P60602 79 aa2.5□□□□□ -2.01
CD44-226ENST00000527889 TMEM254Q8TBM7 123 aa2.5□□□□□ -2.01
CD44-226ENST00000527889 OBSCN-AS1Q96MR7 158 aa2.5□□□□□ -2.01
CD44-226ENST00000527889 IGLV5-48A0A075B6I7 105 aa2.49□□□□□ -2.01
CD44-226ENST00000527889 H3BQ85 93 aa2.49□□□□□ -2.01
CD44-226ENST00000527889 LRP2P98164 4655 aa2.48□□□□□ -2.01
CD44-226ENST00000527889 JMJD7-PLA2G4BH0Y9G9 81 aa2.48□□□□□ -2.01
CD44-226ENST00000527889 ZNF861PO60384 105 aa2.48□□□□□ -2.01
CD44-226ENST00000527889 SMR3BP02814 79 aaPredicted RBP2.48□□□□□ -2.01
CD44-226ENST00000527889 IGLV7-43P04211 117 aa2.48□□□□□ -2.01
CD44-226ENST00000527889 FAM229BQ4G0N7 80 aa2.48□□□□□ -2.01
CD44-226ENST00000527889 Q6ZQT0 140 aa2.48□□□□□ -2.01
CD44-226ENST00000527889 C1orf64Q8NEQ6 169 aa2.48□□□□□ -2.01
CD44-226ENST00000527889 A0A0G2JQZ4 141 aa2.47□□□□□ -2.01
CD44-226ENST00000527889 TRBV7-4A0A0J9YYF1 115 aa2.47□□□□□ -2.01
CD44-226ENST00000527889 H3BPC8 53 aa2.47□□□□□ -2.01
CD44-226ENST00000527889 MT3P25713 68 aa2.47□□□□□ -2.01
CD44-226ENST00000527889 Q5VV11 94 aa2.47□□□□□ -2.01
CD44-226ENST00000527889 SPRR4Q96PI1 79 aa2.47□□□□□ -2.01
CD44-226ENST00000527889 ANAPC11Q9NYG5 84 aa2.47□□□□□ -2.01
CD44-226ENST00000527889 LOC110117498A0A087WWA1 95 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms