RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 UBE2BP63146 152 aa3.58□□□□□ -1.84
LSM1-202ENST00000520286 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.58□□□□□ -1.84
LSM1-202ENST00000520286 H3BPC8 53 aa3.57□□□□□ -1.84
LSM1-202ENST00000520286 PP632Q6XCG6 107 aa3.57□□□□□ -1.84
LSM1-202ENST00000520286 Q8NDZ9 215 aa3.57□□□□□ -1.84
LSM1-202ENST00000520286 PCLOQ9Y6V0 5065 aa3.57□□□□□ -1.84
LSM1-202ENST00000520286 HERC2O95714 4834 aa3.57□□□□□ -1.84
LSM1-202ENST00000520286 LINC00959A0A1B0GUT2 108 aa3.56□□□□□ -1.84
LSM1-202ENST00000520286 PRM2P04554 102 aa3.56□□□□□ -1.84
LSM1-202ENST00000520286 DEFB131AP59861 70 aa3.56□□□□□ -1.84
LSM1-202ENST00000520286 Q5VV11 94 aa3.56□□□□□ -1.84
LSM1-202ENST00000520286 PHF5AQ7RTV0 110 aaKnown RBP3.56□□□□□ -1.84
LSM1-202ENST00000520286 WNK2Q9Y3S1 2297 aa3.55□□□□□ -1.84
LSM1-202ENST00000520286 DNAH1Q9P2D7 4330 aa3.55□□□□□ -1.84
LSM1-202ENST00000520286 DNAH9Q9NYC9 4486 aa3.55□□□□□ -1.84
LSM1-202ENST00000520286 TRBV6-8A0A0A6YYG3 113 aa3.55□□□□□ -1.84
LSM1-202ENST00000520286 A0A1B0GW54 56 aa3.55□□□□□ -1.84
LSM1-202ENST00000520286 A6NN06 94 aa3.55□□□□□ -1.84
LSM1-202ENST00000520286 M0R378 163 aa3.55□□□□□ -1.84
LSM1-202ENST00000520286 Q6ZQY7 126 aa3.55□□□□□ -1.84
LSM1-202ENST00000520286 DYNC2H1Q8NCM8 4307 aaKnown RBP3.54□□□□□ -1.84
LSM1-202ENST00000520286 HTN1P15515 57 aa3.54□□□□□ -1.84
LSM1-202ENST00000520286 ELOF1P60002 83 aaKnown RBP3.54□□□□□ -1.84
LSM1-202ENST00000520286 SACSQ9NZJ4 4579 aa3.54□□□□□ -1.84
LSM1-202ENST00000520286 TRGV2A0A075B6R0 118 aa3.53□□□□□ -1.84
LSM1-202ENST00000520286 TRGV1A0A0A0MS02 117 aa3.53□□□□□ -1.84
LSM1-202ENST00000520286 A8MUN3 132 aa3.53□□□□□ -1.84
LSM1-202ENST00000520286 H3BUX3 64 aa3.53□□□□□ -1.84
LSM1-202ENST00000520286 ATP11AUNQ6ZP68 121 aa3.53□□□□□ -1.84
LSM1-202ENST00000520286 Q9BRP9 147 aa3.53□□□□□ -1.84
LSM1-202ENST00000520286 TRGV4A0A0C4DH28 118 aa3.52□□□□□ -1.85
LSM1-202ENST00000520286 LINC00269Q8N2A0 174 aa3.52□□□□□ -1.85
LSM1-202ENST00000520286 DIRC1Q969H9 104 aa3.52□□□□□ -1.85
LSM1-202ENST00000520286 PSORS1C2Q9UIG4 136 aa3.52□□□□□ -1.85
LSM1-202ENST00000520286 LOC101927531A0A1B0GV80 90 aa3.51□□□□□ -1.85
LSM1-202ENST00000520286 ETDCA0A1B0GVM5 59 aa3.51□□□□□ -1.85
LSM1-202ENST00000520286 LIMD2Q9BT23 127 aa3.51□□□□□ -1.85
LSM1-202ENST00000520286 STAB2Q8WWQ8 2551 aa3.5□□□□□ -1.85
LSM1-202ENST00000520286 GVQW2A0A096LPI5 108 aaPredicted RBP3.5□□□□□ -1.85
LSM1-202ENST00000520286 NDUFB1O75438 58 aa3.5□□□□□ -1.85
LSM1-202ENST00000520286 C10orf99Q6UWK7 81 aa3.5□□□□□ -1.85
LSM1-202ENST00000520286 IGLV5-48A0A075B6I7 105 aa3.49□□□□□ -1.85
LSM1-202ENST00000520286 IGKV3OR2-268A0A0C4DH90 116 aa3.49□□□□□ -1.85
LSM1-202ENST00000520286 C7orf65Q6ZTY9 151 aa3.49□□□□□ -1.85
LSM1-202ENST00000520286 LCA10Q71F78 164 aa3.49□□□□□ -1.85
LSM1-202ENST00000520286 KCNQ1DNQ9H478 68 aa3.49□□□□□ -1.85
LSM1-202ENST00000520286 DNAH3Q8TD57 4116 aa3.48□□□□□ -1.85
LSM1-202ENST00000520286 CDC42SE1Q9NRR8 79 aa3.48□□□□□ -1.85
LSM1-202ENST00000520286 PLAC8Q9NZF1 115 aa3.48□□□□□ -1.85
LSM1-202ENST00000520286 RYR1P21817 5038 aa3.48□□□□□ -1.85
LSM1-202ENST00000520286 KIAA1109Q2LD37 5005 aa3.47□□□□□ -1.85
LSM1-202ENST00000520286 HCG22E2RYF7 251 aa3.47□□□□□ -1.85
LSM1-202ENST00000520286 C9orf116Q5BN46 136 aaPredicted RBP3.47□□□□□ -1.85
LSM1-202ENST00000520286 NOP10Q9NPE3 64 aaKnown RBP3.47□□□□□ -1.85
LSM1-202ENST00000520286 CHKB-CPT1BH3BT56 60 aa3.46□□□□□ -1.86
LSM1-202ENST00000520286 LINC00208Q96KT6 92 aa3.46□□□□□ -1.86
LSM1-202ENST00000520286 SPRR4Q96PI1 79 aa3.46□□□□□ -1.86
LSM1-202ENST00000520286 KRTAP5-1Q6L8H4 278 aa3.45□□□□□ -1.86
LSM1-202ENST00000520286 C4orf3Q8WVX3 66 aa3.45□□□□□ -1.86
LSM1-202ENST00000520286 SPAG11BQ08648 103 aa3.44□□□□□ -1.86
LSM1-202ENST00000520286 UNQ6190/PRO20217Q6UXQ8 127 aa3.44□□□□□ -1.86
LSM1-202ENST00000520286 PRR15LQ9BU68 103 aa3.44□□□□□ -1.86
LSM1-202ENST00000520286 C9orf163Q8N9P6 203 aa3.43□□□□□ -1.86
LSM1-202ENST00000520286 C6orf48Q9UBA6 75 aa3.43□□□□□ -1.86
LSM1-202ENST00000520286 LINC01558Q9Y6Z2 57 aa3.43□□□□□ -1.86
LSM1-202ENST00000520286 K7EQZ3 153 aa3.42□□□□□ -1.86
LSM1-202ENST00000520286 LY6G6CO95867 125 aa3.42□□□□□ -1.86
LSM1-202ENST00000520286 ASB16-AS1Q495Z4 193 aa3.42□□□□□ -1.86
LSM1-202ENST00000520286 CLPSL2Q6UWE3 100 aa3.42□□□□□ -1.86
LSM1-202ENST00000520286 XAGE1AQ9HD64 81 aa3.42□□□□□ -1.86
LSM1-202ENST00000520286 LYSTQ99698 3801 aa3.41□□□□□ -1.86
LSM1-202ENST00000520286 HUWE1Q7Z6Z7 4374 aaKnown RBP3.41□□□□□ -1.86
LSM1-202ENST00000520286 CNBPP62633 177 aaKnown RBP3.41□□□□□ -1.86
LSM1-202ENST00000520286 DEFB136Q30KP8 78 aa3.41□□□□□ -1.86
LSM1-202ENST00000520286 SPTSSBQ8NFR3 76 aa3.41□□□□□ -1.86
LSM1-202ENST00000520286 CSMD3Q7Z407 3707 aa3.41□□□□□ -1.86
LSM1-202ENST00000520286 COA5Q86WW8 74 aa3.4□□□□□ -1.87
LSM1-202ENST00000520286 STARD9Q9P2P6 4700 aa3.39□□□□□ -1.87
LSM1-202ENST00000520286 C1orf137Q5JT78 98 aa3.39□□□□□ -1.87
LSM1-202ENST00000520286 WFDC10AQ9H1F0 79 aa3.39□□□□□ -1.87
LSM1-202ENST00000520286 PRO0255Q9UI72 69 aa3.39□□□□□ -1.87
LSM1-202ENST00000520286 SORL1Q92673 2214 aa3.38□□□□□ -1.87
LSM1-202ENST00000520286 H0Y9P7 68 aa3.38□□□□□ -1.87
LSM1-202ENST00000520286 ANGP03950 147 aaKnown RBP3.38□□□□□ -1.87
LSM1-202ENST00000520286 ABCA13Q86UQ4 5058 aa3.38□□□□□ -1.87
LSM1-202ENST00000520286 SPRR1AP35321 89 aa3.37□□□□□ -1.87
LSM1-202ENST00000520286 DNAH7Q8WXX0 4024 aa3.37□□□□□ -1.87
LSM1-202ENST00000520286 PLECQ15149 4684 aaKnown RBP3.36□□□□□ -1.87
LSM1-202ENST00000520286 KRTAP26-1Q6PEX3 210 aa3.36□□□□□ -1.87
LSM1-202ENST00000520286 Q6ZRX8 168 aa3.36□□□□□ -1.87
LSM1-202ENST00000520286 LINC01554Q52M75 96 aa3.35□□□□□ -1.87
LSM1-202ENST00000520286 LELP1Q5T871 98 aa3.35□□□□□ -1.87
LSM1-202ENST00000520286 CASC2Q6XLA1 102 aa3.35□□□□□ -1.87
LSM1-202ENST00000520286 IGLV1-51P01701 117 aa3.34□□□□□ -1.87
LSM1-202ENST00000520286 SPINK7P58062 85 aa3.34□□□□□ -1.87
LSM1-202ENST00000520286 KRTAP5-5Q701N2 237 aaPredicted RBP3.34□□□□□ -1.87
LSM1-202ENST00000520286 FRAS1Q86XX4 4008 aa3.34□□□□□ -1.87
LSM1-202ENST00000520286 DEFB130BP0DP73 79 aa3.33□□□□□ -1.88
LSM1-202ENST00000520286 DEFB130AP0DP74 79 aa3.33□□□□□ -1.88
LSM1-202ENST00000520286 KRTAP10-1P60331 282 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms