RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 VPS13BQ7Z7G8 4022 aa0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 NBEAQ8NFP9 2946 aa0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 ANKHD1Q8IWZ3 2542 aaKnown RBP0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 AKAP13Q12802 2813 aa0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 KRTAP21-3Q3LHN1 58 aa0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 CEP350Q5VT06 3117 aa0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 RP1L1Q8IWN7 2480 aaPredicted RBP0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 TRANK1O15050 2925 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 EP300Q09472 2414 aaPredicted RBP0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 ABCA2Q9BZC7 2435 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 NIPBLQ6KC79 2804 aaeCLIP0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH1Q9P2D7 4330 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH10Q8IVF4 4471 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 J3QKU1 62 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 HTN3P15516 51 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 SMR3AQ99954 134 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 CEP290O15078 2479 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 PRRC2CQ9Y520 2896 aaKnown RBP0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH8Q96JB1 4490 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 DYNC2H1Q8NCM8 4307 aaKnown RBP0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 CACNA1AO00555 2505 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 SRRM2Q9UQ35 2752 aaKnown RBP0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 PRKDCP78527 4128 aaKnown RBP0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 KRTAP2-3P0C7H8 128 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 KRTAP8-1Q8IUC2 63 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 KRTAP2-4Q9BYR9 128 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 KRTAP2-1Q9BYU5 128 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 CCDC168Q8NDH2 2452 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 CRYBG3Q68DQ2 2970 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH2Q9P225 4427 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 NAV2Q8IVL1 2488 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 USP9YO00507 2555 aaPredicted RBP0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 GVINP1Q7Z2Y8 2422 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 ITPR1Q14643 2758 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH17Q9UFH2 4485 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 M0R2T5 61 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 ZZEF1O43149 2961 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 ZFHX4Q86UP3 3567 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 USP24Q9UPU5 2620 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH3Q8TD57 4116 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 FAM186AA6NE01 2351 aa0.65□□□□□ -2.3
HMGB3P17-201ENST00000504195 MUC5BQ9HC84 5762 aaPredicted RBP0.65□□□□□ -2.3
HMGB3P17-201ENST00000504195 CEP250Q9BV73 2442 aa0.65□□□□□ -2.31
HMGB3P17-201ENST00000504195 LRBAP50851 2863 aa0.65□□□□□ -2.31
HMGB3P17-201ENST00000504195 C2CD3Q4AC94 2353 aa0.65□□□□□ -2.31
HMGB3P17-201ENST00000504195 SETD2Q9BYW2 2564 aaPredicted RBP0.65□□□□□ -2.31
HMGB3P17-201ENST00000504195 APCP25054 2843 aa0.65□□□□□ -2.31
HMGB3P17-201ENST00000504195 CMYA5Q8N3K9 4069 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 TRRAPQ9Y4A5 3859 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 ANK3Q12955 4377 aaKnown RBP0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 DNAH9Q9NYC9 4486 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 LYSTQ99698 3801 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 PTPN13Q12923 2485 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 PKD1L2Q7Z442 2459 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 SMG1Q96Q15 3661 aaKnown RBP0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 ANK2Q01484 3957 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 KMT2AQ03164 3969 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 PKHD1L1Q86WI1 4243 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 REV3LO60673 3130 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 CELSR1Q9NYQ6 3014 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 NCOR1O75376 2440 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 HIVEP3Q5T1R4 2406 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 CREBBPQ92793 2442 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 FLGP20930 4061 aaPredicted RBP0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 SPENQ96T58 3664 aaKnown RBP0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 COL6A3P12111 3177 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 CFAP54Q96N23 3096 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 CHD9Q3L8U1 2897 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 SRCAPQ6ZRS2 3230 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 DNAH7Q8WXX0 4024 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 DEFB4AO15263 64 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 HSPG2P98160 4391 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 UTRNP46939 3433 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 HECTD4Q9Y4D8 3996 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 NBASA2RRP1 2371 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 LRRK2Q5S007 2527 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 NF1P21359 2839 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 AHNAKQ09666 5890 aaKnown RBP0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 TENM4Q6N022 2769 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 FRYLO94915 3013 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 USP34Q70CQ2 3546 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 BOD1L1Q8NFC6 3051 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 DNAH5Q8TE73 4624 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 ZNF469Q96JG9 3925 aaPredicted RBP0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 DNAH6Q9C0G6 4158 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 HECTD1Q9ULT8 2610 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 UTP20O75691 2785 aaKnown RBP0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 FAT2Q9NYQ8 4349 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 ZNF292O60281 2723 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 HELZ2Q9BYK8 2649 aaKnown RBP0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 TGP01266 2768 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 BSNQ9UPA5 3926 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 LAMA5O15230 3695 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 PKD1P98161 4303 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 KALRNO60229 2985 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 CENPEQ02224 2701 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 RIF1Q5UIP0 2472 aaKnown RBP0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 APOBP04114 4563 aaKnown RBP0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 ABCA12Q86UK0 2595 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms