RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 VPS13BQ7Z7G8 4022 aa0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 NBEAQ8NFP9 2946 aa0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 ANKHD1Q8IWZ3 2542 aaKnown RBP0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 AKAP13Q12802 2813 aa0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 KRTAP21-3Q3LHN1 58 aa0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 CEP350Q5VT06 3117 aa0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 RP1L1Q8IWN7 2480 aaPredicted RBP0.69□□□□□ -2.3
HMGB3P17-201ENST00000504195 TRANK1O15050 2925 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 EP300Q09472 2414 aaPredicted RBP0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 ABCA2Q9BZC7 2435 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 NIPBLQ6KC79 2804 aaeCLIP0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH1Q9P2D7 4330 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH10Q8IVF4 4471 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 J3QKU1 62 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 HTN3P15516 51 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 SMR3AQ99954 134 aa0.68□□□□□ -2.3
HMGB3P17-201ENST00000504195 CEP290O15078 2479 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 PRRC2CQ9Y520 2896 aaKnown RBP0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH8Q96JB1 4490 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 DYNC2H1Q8NCM8 4307 aaKnown RBP0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 CACNA1AO00555 2505 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 SRRM2Q9UQ35 2752 aaKnown RBP0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 PRKDCP78527 4128 aaKnown RBP0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 KRTAP2-3P0C7H8 128 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 KRTAP8-1Q8IUC2 63 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 KRTAP2-4Q9BYR9 128 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 KRTAP2-1Q9BYU5 128 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 CCDC168Q8NDH2 2452 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 CRYBG3Q68DQ2 2970 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH2Q9P225 4427 aa0.67□□□□□ -2.3
HMGB3P17-201ENST00000504195 NAV2Q8IVL1 2488 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 USP9YO00507 2555 aaPredicted RBP0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 GVINP1Q7Z2Y8 2422 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 ITPR1Q14643 2758 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH17Q9UFH2 4485 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 M0R2T5 61 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 ZZEF1O43149 2961 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 ZFHX4Q86UP3 3567 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 USP24Q9UPU5 2620 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 DNAH3Q8TD57 4116 aa0.66□□□□□ -2.3
HMGB3P17-201ENST00000504195 FAM186AA6NE01 2351 aa0.65□□□□□ -2.3
HMGB3P17-201ENST00000504195 MUC5BQ9HC84 5762 aaPredicted RBP0.65□□□□□ -2.3
HMGB3P17-201ENST00000504195 CEP250Q9BV73 2442 aa0.65□□□□□ -2.31
HMGB3P17-201ENST00000504195 LRBAP50851 2863 aa0.65□□□□□ -2.31
HMGB3P17-201ENST00000504195 C2CD3Q4AC94 2353 aa0.65□□□□□ -2.31
HMGB3P17-201ENST00000504195 SETD2Q9BYW2 2564 aaPredicted RBP0.65□□□□□ -2.31
HMGB3P17-201ENST00000504195 APCP25054 2843 aa0.65□□□□□ -2.31
HMGB3P17-201ENST00000504195 CMYA5Q8N3K9 4069 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 TRRAPQ9Y4A5 3859 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 ANK3Q12955 4377 aaKnown RBP0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 DNAH9Q9NYC9 4486 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 LYSTQ99698 3801 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 PTPN13Q12923 2485 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 PKD1L2Q7Z442 2459 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 SMG1Q96Q15 3661 aaKnown RBP0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 ANK2Q01484 3957 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 KMT2AQ03164 3969 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 PKHD1L1Q86WI1 4243 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 REV3LO60673 3130 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 CELSR1Q9NYQ6 3014 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 NCOR1O75376 2440 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 HIVEP3Q5T1R4 2406 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 CREBBPQ92793 2442 aa0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 FLGP20930 4061 aaPredicted RBP0.64□□□□□ -2.31
HMGB3P17-201ENST00000504195 SPENQ96T58 3664 aaKnown RBP0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 COL6A3P12111 3177 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 CFAP54Q96N23 3096 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 CHD9Q3L8U1 2897 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 SRCAPQ6ZRS2 3230 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 DNAH7Q8WXX0 4024 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 DEFB4AO15263 64 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 HSPG2P98160 4391 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 UTRNP46939 3433 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 HECTD4Q9Y4D8 3996 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 NBASA2RRP1 2371 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 LRRK2Q5S007 2527 aa0.63□□□□□ -2.31
HMGB3P17-201ENST00000504195 NF1P21359 2839 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 AHNAKQ09666 5890 aaKnown RBP0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 TENM4Q6N022 2769 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 FRYLO94915 3013 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 USP34Q70CQ2 3546 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 BOD1L1Q8NFC6 3051 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 DNAH5Q8TE73 4624 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 ZNF469Q96JG9 3925 aaPredicted RBP0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 DNAH6Q9C0G6 4158 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 HECTD1Q9ULT8 2610 aa0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 UTP20O75691 2785 aaKnown RBP0.62□□□□□ -2.31
HMGB3P17-201ENST00000504195 FAT2Q9NYQ8 4349 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 ZNF292O60281 2723 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 HELZ2Q9BYK8 2649 aaKnown RBP0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 TGP01266 2768 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 BSNQ9UPA5 3926 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 LAMA5O15230 3695 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 PKD1P98161 4303 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 KALRNO60229 2985 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 CENPEQ02224 2701 aa0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 RIF1Q5UIP0 2472 aaKnown RBP0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 APOBP04114 4563 aaKnown RBP0.61□□□□□ -2.31
HMGB3P17-201ENST00000504195 ABCA12Q86UK0 2595 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms