RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 H3BPC8 53 aa13.07□□□□□ -0.32
PCDH1-204ENST00000503492 LINC00336Q6ZUF6 198 aa13.05□□□□□ -0.32
PCDH1-204ENST00000503492 MRPL34Q9BQ48 92 aaKnown RBP13.03□□□□□ -0.32
PCDH1-204ENST00000503492 TP53AIP1Q9HCN2 124 aa13.03□□□□□ -0.32
PCDH1-204ENST00000503492 PKHD1P08F94 4074 aa13.03□□□□□ -0.32
PCDH1-204ENST00000503492 Q5XG85 94 aa13.02□□□□□ -0.32
PCDH1-204ENST00000503492 C1orf64Q8NEQ6 169 aa13.02□□□□□ -0.33
PCDH1-204ENST00000503492 NDUFS5O43920 106 aa13□□□□□ -0.33
PCDH1-204ENST00000503492 A0A1B0GVY2 172 aa12.98□□□□□ -0.33
PCDH1-204ENST00000503492 SMIM26A0A096LP01 95 aa12.96□□□□□ -0.33
PCDH1-204ENST00000503492 PLA2G1BP04054 148 aaKnown RBP12.96□□□□□ -0.33
PCDH1-204ENST00000503492 PRR4Q16378 134 aa12.96□□□□□ -0.33
PCDH1-204ENST00000503492 C1orf195Q5TG92 126 aa12.94□□□□□ -0.34
PCDH1-204ENST00000503492 FP248Q71RG6 208 aaPredicted RBP12.93□□□□□ -0.34
PCDH1-204ENST00000503492 CYP4F30PQ9H0H9 118 aa12.93□□□□□ -0.34
PCDH1-204ENST00000503492 C4orf26Q17RF5 130 aa12.92□□□□□ -0.34
PCDH1-204ENST00000503492 DYNC1H1Q14204 4646 aaKnown RBP12.92□□□□□ -0.34
PCDH1-204ENST00000503492 C8orf87E5RJ46 101 aa12.89□□□□□ -0.35
PCDH1-204ENST00000503492 SMR3BP02814 79 aaPredicted RBP12.89□□□□□ -0.35
PCDH1-204ENST00000503492 TYMSOSQ8TAI1 123 aa12.89□□□□□ -0.35
PCDH1-204ENST00000503492 SPANXA2-OT1Q8N9U9 137 aa12.88□□□□□ -0.35
PCDH1-204ENST00000503492 LIMD2Q9BT23 127 aa12.86□□□□□ -0.35
PCDH1-204ENST00000503492 LINC00313P59037 77 aa12.84□□□□□ -0.35
PCDH1-204ENST00000503492 C4orf48Q5BLP8 95 aa12.82□□□□□ -0.36
PCDH1-204ENST00000503492 PCOTHQ58A44 107 aa12.81□□□□□ -0.36
PCDH1-204ENST00000503492 Q5W150 140 aa12.81□□□□□ -0.36
PCDH1-204ENST00000503492 RYR2Q92736 4967 aa12.8□□□□□ -0.36
PCDH1-204ENST00000503492 PRR26Q8N8Z3 221 aa12.8□□□□□ -0.36
PCDH1-204ENST00000503492 KRTAP13-3Q3SY46 172 aa12.79□□□□□ -0.36
PCDH1-204ENST00000503492 SPINK1P00995 79 aa12.78□□□□□ -0.36
PCDH1-204ENST00000503492 APOBP04114 4563 aaKnown RBP12.77□□□□□ -0.37
PCDH1-204ENST00000503492 KRTAP10-4P60372 401 aaPredicted RBP12.76□□□□□ -0.37
PCDH1-204ENST00000503492 IGLV7-46A0A075B6I9 117 aa12.75□□□□□ -0.37
PCDH1-204ENST00000503492 MPLKIPQ8TAP9 179 aa12.74□□□□□ -0.37
PCDH1-204ENST00000503492 Q8N9P0 234 aaPredicted RBP12.73□□□□□ -0.37
PCDH1-204ENST00000503492 KRTAP16-1A8MUX0 517 aa12.72□□□□□ -0.37
PCDH1-204ENST00000503492 LINC00304Q8N9R0 145 aa12.71□□□□□ -0.37
PCDH1-204ENST00000503492 FAT1Q14517 4588 aa12.7□□□□□ -0.38
PCDH1-204ENST00000503492 LOC101927531A0A1B0GV80 90 aa12.7□□□□□ -0.38
PCDH1-204ENST00000503492 KMT2CQ8NEZ4 4911 aaKnown RBP12.69□□□□□ -0.38
PCDH1-204ENST00000503492 RPS29P62273 56 aaKnown RBP12.65□□□□□ -0.38
PCDH1-204ENST00000503492 SPAG11AQ6PDA7 123 aa12.64□□□□□ -0.39
PCDH1-204ENST00000503492 FAM229AH3BQW9 127 aa12.63□□□□□ -0.39
PCDH1-204ENST00000503492 SVIPQ8NHG7 77 aa12.63□□□□□ -0.39
PCDH1-204ENST00000503492 RETNLBQ9BQ08 111 aa12.62□□□□□ -0.39
PCDH1-204ENST00000503492 Q1T7F1 81 aa12.58□□□□□ -0.4
PCDH1-204ENST00000503492 COA5Q86WW8 74 aa12.58□□□□□ -0.4
PCDH1-204ENST00000503492 PKHD1L1Q86WI1 4243 aa12.55□□□□□ -0.4
PCDH1-204ENST00000503492 IGKV2-30P06310 120 aa12.51□□□□□ -0.41
PCDH1-204ENST00000503492 HRES1P13985 223 aa12.48□□□□□ -0.41
PCDH1-204ENST00000503492 PSPHP1O15172 72 aa12.42□□□□□ -0.42
PCDH1-204ENST00000503492 V9GYY9 64 aa12.42□□□□□ -0.42
PCDH1-204ENST00000503492 IGKV2D-30A0A075B6S6 120 aa12.38□□□□□ -0.43
PCDH1-204ENST00000503492 A8MUN3 132 aa12.36□□□□□ -0.43
PCDH1-204ENST00000503492 C9orf92A6NGG3 77 aa12.35□□□□□ -0.43
PCDH1-204ENST00000503492 DMAC1Q96GE9 116 aa12.34□□□□□ -0.43
PCDH1-204ENST00000503492 RYR3Q15413 4870 aa12.33□□□□□ -0.43
PCDH1-204ENST00000503492 Q5VSD8 79 aa12.33□□□□□ -0.44
PCDH1-204ENST00000503492 HSPG2P98160 4391 aa12.33□□□□□ -0.44
PCDH1-204ENST00000503492 ACYP2P14621 99 aa12.33□□□□□ -0.44
PCDH1-204ENST00000503492 BRK1Q8WUW1 75 aa12.3□□□□□ -0.44
PCDH1-204ENST00000503492 Q8N1X5 172 aa12.29□□□□□ -0.44
PCDH1-204ENST00000503492 Q5VV11 94 aa12.28□□□□□ -0.44
PCDH1-204ENST00000503492 FLG2Q5D862 2391 aaPredicted RBP12.28□□□□□ -0.44
PCDH1-204ENST00000503492 C20orf166-AS1Q96NR2 134 aa12.27□□□□□ -0.45
PCDH1-204ENST00000503492 A8MUU9 505 aa12.26□□□□□ -0.45
PCDH1-204ENST00000503492 PRR15LQ9BU68 103 aa12.26□□□□□ -0.45
PCDH1-204ENST00000503492 PRO0628Q9UI54 55 aa12.26□□□□□ -0.45
PCDH1-204ENST00000503492 KRTAP10-8P60410 259 aa12.25□□□□□ -0.45
PCDH1-204ENST00000503492 KRTAP17-1Q9BYP8 105 aa12.23□□□□□ -0.45
PCDH1-204ENST00000503492 LRP1Q07954 4544 aaKnown RBP12.22□□□□□ -0.45
PCDH1-204ENST00000503492 C7orf65Q6ZTY9 151 aa12.22□□□□□ -0.45
PCDH1-204ENST00000503492 TNXBP22105 4242 aa12.21□□□□□ -0.45
PCDH1-204ENST00000503492 LINC01558Q9Y6Z2 57 aa12.21□□□□□ -0.45
PCDH1-204ENST00000503492 RYR1P21817 5038 aa12.19□□□□□ -0.46
PCDH1-204ENST00000503492 CHKB-CPT1BH3BT56 60 aa12.16□□□□□ -0.46
PCDH1-204ENST00000503492 Q75L30 129 aa12.12□□□□□ -0.47
PCDH1-204ENST00000503492 FAT3Q8TDW7 4589 aa12.12□□□□□ -0.47
PCDH1-204ENST00000503492 KIAA1109Q2LD37 5005 aa12.04□□□□□ -0.48
PCDH1-204ENST00000503492 A8MU10 97 aa12□□□□□ -0.49
PCDH1-204ENST00000503492 SPINK7P58062 85 aa11.99□□□□□ -0.49
PCDH1-204ENST00000503492 DMBT1Q9UGM3 2413 aaPredicted RBP11.98□□□□□ -0.49
PCDH1-204ENST00000503492 A6NED7 52 aa11.97□□□□□ -0.49
PCDH1-204ENST00000503492 MT1HL1P0DM35 61 aa11.97□□□□□ -0.49
PCDH1-204ENST00000503492 LCA10Q71F78 164 aa11.91□□□□□ -0.5
PCDH1-204ENST00000503492 EPPK1P58107 5090 aaKnown RBP11.9□□□□□ -0.5
PCDH1-204ENST00000503492 KRTAP3-1Q9BYR8 98 aa11.9□□□□□ -0.51
PCDH1-204ENST00000503492 MYCBP2O75592 4640 aa11.86□□□□□ -0.51
PCDH1-204ENST00000503492 A0A1B0GU69 56 aa11.85□□□□□ -0.51
PCDH1-204ENST00000503492 ATP11AUNQ6ZP68 121 aa11.85□□□□□ -0.51
PCDH1-204ENST00000503492 RPL37P61927 97 aaKnown RBP11.84□□□□□ -0.51
PCDH1-204ENST00000503492 XP32Q5T750 250 aa11.84□□□□□ -0.51
PCDH1-204ENST00000503492 CDC42SE1Q9NRR8 79 aa11.82□□□□□ -0.52
PCDH1-204ENST00000503492 COX6B2Q6YFQ2 88 aa11.75□□□□□ -0.53
PCDH1-204ENST00000503492 KRTAP4-5Q9BYR2 181 aa11.7□□□□□ -0.54
PCDH1-204ENST00000503492 SPTSSBQ8NFR3 76 aa11.7□□□□□ -0.54
PCDH1-204ENST00000503492 PMAIP1Q13794 54 aa11.61□□□□□ -0.55
PCDH1-204ENST00000503492 UQCR11O14957 56 aa11.57□□□□□ -0.56
PCDH1-204ENST00000503492 SEC61GP60059 68 aa11.57□□□□□ -0.56
PCDH1-204ENST00000503492 TPRXLQ17RH7 258 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms