RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 C1orf64Q8NEQ6 169 aa13.67□□□□□ -0.22
USF3-203ENST00000491165 PRO0628Q9UI54 55 aa13.67□□□□□ -0.22
USF3-203ENST00000491165 IGLV7-43P04211 117 aa13.64□□□□□ -0.23
USF3-203ENST00000491165 CYP4F30PQ9H0H9 118 aa13.64□□□□□ -0.23
USF3-203ENST00000491165 TRAV22A0A0B4J277 110 aa13.62□□□□□ -0.23
USF3-203ENST00000491165 LINC00208Q96KT6 92 aa13.61□□□□□ -0.23
USF3-203ENST00000491165 Q5VSD8 79 aa13.6□□□□□ -0.23
USF3-203ENST00000491165 ZNF861PO60384 105 aa13.59□□□□□ -0.23
USF3-203ENST00000491165 H0Y9P7 68 aa13.58□□□□□ -0.23
USF3-203ENST00000491165 H3BPC8 53 aa13.58□□□□□ -0.24
USF3-203ENST00000491165 PRR4Q16378 134 aa13.58□□□□□ -0.24
USF3-203ENST00000491165 FAM229AH3BQW9 127 aa13.55□□□□□ -0.24
USF3-203ENST00000491165 Q8N1X5 172 aa13.55□□□□□ -0.24
USF3-203ENST00000491165 HERC2O95714 4834 aa13.54□□□□□ -0.24
USF3-203ENST00000491165 PKHD1L1Q86WI1 4243 aa13.53□□□□□ -0.24
USF3-203ENST00000491165 BRK1Q8WUW1 75 aa13.52□□□□□ -0.24
USF3-203ENST00000491165 IGLV9-49A0A0B4J1Y8 123 aa13.52□□□□□ -0.25
USF3-203ENST00000491165 MMP24-AS1A0A0U1RRL7 71 aa13.52□□□□□ -0.25
USF3-203ENST00000491165 Q1T7F1 81 aa13.52□□□□□ -0.25
USF3-203ENST00000491165 KRTAP4-5Q9BYR2 181 aa13.5□□□□□ -0.25
USF3-203ENST00000491165 PLA2G1BP04054 148 aaKnown RBP13.49□□□□□ -0.25
USF3-203ENST00000491165 SPANXA2-OT1Q8N9U9 137 aa13.49□□□□□ -0.25
USF3-203ENST00000491165 LINC00483Q53H64 154 aa13.48□□□□□ -0.25
USF3-203ENST00000491165 LRP1Q07954 4544 aaKnown RBP13.46□□□□□ -0.25
USF3-203ENST00000491165 Q96NJ1 140 aa13.46□□□□□ -0.25
USF3-203ENST00000491165 MYCBP2O75592 4640 aa13.45□□□□□ -0.26
USF3-203ENST00000491165 ZNF706Q9Y5V0 76 aaPredicted RBP13.45□□□□□ -0.26
USF3-203ENST00000491165 SPINK6Q6UWN8 80 aa13.42□□□□□ -0.26
USF3-203ENST00000491165 ANAPC11Q9NYG5 84 aa13.42□□□□□ -0.26
USF3-203ENST00000491165 MOBPQ13875 183 aa13.4□□□□□ -0.26
USF3-203ENST00000491165 ABCA13Q86UQ4 5058 aa13.4□□□□□ -0.26
USF3-203ENST00000491165 ASB16-AS1Q495Z4 193 aa13.39□□□□□ -0.27
USF3-203ENST00000491165 KRTAP1-4P0C5Y4 121 aa13.38□□□□□ -0.27
USF3-203ENST00000491165 FLG2Q5D862 2391 aaPredicted RBP13.37□□□□□ -0.27
USF3-203ENST00000491165 TP53AIP1Q9HCN2 124 aa13.36□□□□□ -0.27
USF3-203ENST00000491165 C8orf17Q9NRJ1 99 aa13.36□□□□□ -0.27
USF3-203ENST00000491165 FAT3Q8TDW7 4589 aa13.35□□□□□ -0.27
USF3-203ENST00000491165 V9GYY9 64 aa13.34□□□□□ -0.27
USF3-203ENST00000491165 PSPHP1O15172 72 aa13.33□□□□□ -0.28
USF3-203ENST00000491165 A0A1B0GVX0 72 aa13.31□□□□□ -0.28
USF3-203ENST00000491165 A0A087X002 238 aa13.3□□□□□ -0.28
USF3-203ENST00000491165 IGHV6-1A0A0B4J1U7 121 aa13.3□□□□□ -0.28
USF3-203ENST00000491165 IGLV7-46A0A075B6I9 117 aa13.27□□□□□ -0.28
USF3-203ENST00000491165 TNXBP22105 4242 aa13.26□□□□□ -0.29
USF3-203ENST00000491165 NDUFS5O43920 106 aa13.24□□□□□ -0.29
USF3-203ENST00000491165 KRTAP13-2Q52LG2 175 aa13.23□□□□□ -0.29
USF3-203ENST00000491165 PCOTHQ58A44 107 aa13.22□□□□□ -0.29
USF3-203ENST00000491165 A8MUN3 132 aa13.22□□□□□ -0.29
USF3-203ENST00000491165 MRPL34Q9BQ48 92 aaKnown RBP13.22□□□□□ -0.29
USF3-203ENST00000491165 PRR26Q8N8Z3 221 aa13.21□□□□□ -0.3
USF3-203ENST00000491165 Q8N9P0 234 aaPredicted RBP13.2□□□□□ -0.3
USF3-203ENST00000491165 CD164Q04900 197 aa13.19□□□□□ -0.3
USF3-203ENST00000491165 C1orf195Q5TG92 126 aa13.19□□□□□ -0.3
USF3-203ENST00000491165 COA5Q86WW8 74 aa13.19□□□□□ -0.3
USF3-203ENST00000491165 LIMD2Q9BT23 127 aa13.18□□□□□ -0.3
USF3-203ENST00000491165 PCLOQ9Y6V0 5065 aa13.18□□□□□ -0.3
USF3-203ENST00000491165 Q5VV11 94 aa13.15□□□□□ -0.3
USF3-203ENST00000491165 NOTCH2NLQ7Z3S9 236 aa13.15□□□□□ -0.3
USF3-203ENST00000491165 PRR15LQ9BU68 103 aa13.08□□□□□ -0.32
USF3-203ENST00000491165 TYMSOSQ8TAI1 123 aa13.07□□□□□ -0.32
USF3-203ENST00000491165 MT1HL1P0DM35 61 aa13.05□□□□□ -0.32
USF3-203ENST00000491165 KRTAP10-8P60410 259 aa13.05□□□□□ -0.32
USF3-203ENST00000491165 CHKB-CPT1BH3BT56 60 aa13.03□□□□□ -0.32
USF3-203ENST00000491165 LOC101927531A0A1B0GV80 90 aa13.02□□□□□ -0.33
USF3-203ENST00000491165 SSBP3-AS1Q7Z2R9 100 aa13.02□□□□□ -0.33
USF3-203ENST00000491165 Q75L30 129 aa12.98□□□□□ -0.33
USF3-203ENST00000491165 Q5W150 140 aa12.97□□□□□ -0.33
USF3-203ENST00000491165 C8orf87E5RJ46 101 aa12.97□□□□□ -0.33
USF3-203ENST00000491165 HRES1P13985 223 aa12.97□□□□□ -0.33
USF3-203ENST00000491165 KRTAP13-3Q3SY46 172 aa12.96□□□□□ -0.33
USF3-203ENST00000491165 DMBT1Q9UGM3 2413 aaPredicted RBP12.94□□□□□ -0.34
USF3-203ENST00000491165 SPAG11AQ6PDA7 123 aa12.92□□□□□ -0.34
USF3-203ENST00000491165 LINC01558Q9Y6Z2 57 aa12.92□□□□□ -0.34
USF3-203ENST00000491165 A8MU10 97 aa12.91□□□□□ -0.34
USF3-203ENST00000491165 LINC00304Q8N9R0 145 aa12.91□□□□□ -0.34
USF3-203ENST00000491165 A6NED7 52 aa12.87□□□□□ -0.35
USF3-203ENST00000491165 LINC00313P59037 77 aa12.85□□□□□ -0.35
USF3-203ENST00000491165 PMAIP1Q13794 54 aa12.82□□□□□ -0.36
USF3-203ENST00000491165 C4orf48Q5BLP8 95 aa12.81□□□□□ -0.36
USF3-203ENST00000491165 LCA10Q71F78 164 aa12.8□□□□□ -0.36
USF3-203ENST00000491165 SPINK1P00995 79 aa12.8□□□□□ -0.36
USF3-203ENST00000491165 J3QL48 77 aa12.79□□□□□ -0.36
USF3-203ENST00000491165 HERC1Q15751 4861 aa12.79□□□□□ -0.36
USF3-203ENST00000491165 ACYP2P14621 99 aa12.77□□□□□ -0.37
USF3-203ENST00000491165 CDC42SE1Q9NRR8 79 aa12.74□□□□□ -0.37
USF3-203ENST00000491165 ATP11AUNQ6ZP68 121 aa12.73□□□□□ -0.37
USF3-203ENST00000491165 SPTSSBQ8NFR3 76 aa12.72□□□□□ -0.37
USF3-203ENST00000491165 DMAC1Q96GE9 116 aa12.71□□□□□ -0.37
USF3-203ENST00000491165 RPS29P62273 56 aaKnown RBP12.71□□□□□ -0.38
USF3-203ENST00000491165 RETNLBQ9BQ08 111 aa12.7□□□□□ -0.38
USF3-203ENST00000491165 IGKV2-30P06310 120 aa12.68□□□□□ -0.38
USF3-203ENST00000491165 KRTAP16-1A8MUX0 517 aa12.67□□□□□ -0.38
USF3-203ENST00000491165 SPINK7P58062 85 aa12.65□□□□□ -0.38
USF3-203ENST00000491165 LPAP08519 4548 aa12.55□□□□□ -0.4
USF3-203ENST00000491165 A6NN06 94 aa12.54□□□□□ -0.4
USF3-203ENST00000491165 KTN1-AS1Q86SY8 53 aa12.52□□□□□ -0.4
USF3-203ENST00000491165 IGKV2D-30A0A075B6S6 120 aa12.5□□□□□ -0.41
USF3-203ENST00000491165 SEC61GP60059 68 aa12.5□□□□□ -0.41
USF3-203ENST00000491165 HMCN2Q8NDA2 5059 aa12.45□□□□□ -0.42
USF3-203ENST00000491165 A0A1B0GU69 56 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms