RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 MMP24-AS1A0A0U1RRL7 71 aa8.05□□□□□ -1.12
CLK3-204ENST00000483723 C1orf195Q5TG92 126 aa8.05□□□□□ -1.12
CLK3-204ENST00000483723 LINC00304Q8N9R0 145 aa8.04□□□□□ -1.12
CLK3-204ENST00000483723 KRTAP17-1Q9BYP8 105 aa8.04□□□□□ -1.12
CLK3-204ENST00000483723 RYR1P21817 5038 aa8.03□□□□□ -1.12
CLK3-204ENST00000483723 CASC2Q6XLA1 102 aa8.03□□□□□ -1.12
CLK3-204ENST00000483723 WFDC13Q8IUB5 93 aa8.03□□□□□ -1.12
CLK3-204ENST00000483723 HSPG2P98160 4391 aa8.02□□□□□ -1.12
CLK3-204ENST00000483723 C8orf17Q9NRJ1 99 aa8.02□□□□□ -1.13
CLK3-204ENST00000483723 IGHV6-1A0A0B4J1U7 121 aa7.99□□□□□ -1.13
CLK3-204ENST00000483723 hDV103S1A0JD37 113 aa7.99□□□□□ -1.13
CLK3-204ENST00000483723 PCLOQ9Y6V0 5065 aa7.99□□□□□ -1.13
CLK3-204ENST00000483723 Q8N1X5 172 aa7.98□□□□□ -1.13
CLK3-204ENST00000483723 NOTCH2NLQ7Z3S9 236 aa7.98□□□□□ -1.13
CLK3-204ENST00000483723 KRTAP10-8P60410 259 aa7.97□□□□□ -1.13
CLK3-204ENST00000483723 C8orf87E5RJ46 101 aa7.96□□□□□ -1.14
CLK3-204ENST00000483723 TMEM254Q8TBM7 123 aa7.95□□□□□ -1.14
CLK3-204ENST00000483723 C20orf197Q8N268 126 aa7.94□□□□□ -1.14
CLK3-204ENST00000483723 KLKP1Q107X0 134 aa7.93□□□□□ -1.14
CLK3-204ENST00000483723 C5orf47Q569G3 176 aa7.92□□□□□ -1.14
CLK3-204ENST00000483723 MRPL34Q9BQ48 92 aaKnown RBP7.92□□□□□ -1.14
CLK3-204ENST00000483723 CYSTM1Q9H1C7 97 aa7.92□□□□□ -1.14
CLK3-204ENST00000483723 ABCA13Q86UQ4 5058 aa7.92□□□□□ -1.14
CLK3-204ENST00000483723 KRTAP4-5Q9BYR2 181 aa7.92□□□□□ -1.14
CLK3-204ENST00000483723 LINC00313P59037 77 aa7.9□□□□□ -1.14
CLK3-204ENST00000483723 A0A0U1RQV1 116 aa7.89□□□□□ -1.15
CLK3-204ENST00000483723 TP53AIP1Q9HCN2 124 aa7.89□□□□□ -1.15
CLK3-204ENST00000483723 SNURFQ9Y675 71 aa7.86□□□□□ -1.15
CLK3-204ENST00000483723 KRTAP16-1A8MUX0 517 aa7.86□□□□□ -1.15
CLK3-204ENST00000483723 ZCCHC13Q8WW36 166 aaKnown RBP7.86□□□□□ -1.15
CLK3-204ENST00000483723 Q8N9P0 234 aaPredicted RBP7.84□□□□□ -1.15
CLK3-204ENST00000483723 H3BPC8 53 aa7.83□□□□□ -1.16
CLK3-204ENST00000483723 H7BZZ5 65 aa7.83□□□□□ -1.16
CLK3-204ENST00000483723 NDUFC1O43677 76 aa7.82□□□□□ -1.16
CLK3-204ENST00000483723 MT1HL1P0DM35 61 aa7.82□□□□□ -1.16
CLK3-204ENST00000483723 FLG2Q5D862 2391 aaPredicted RBP7.81□□□□□ -1.16
CLK3-204ENST00000483723 H0Y9P7 68 aa7.81□□□□□ -1.16
CLK3-204ENST00000483723 MP68P56378 58 aa7.81□□□□□ -1.16
CLK3-204ENST00000483723 TRAV22A0A0B4J277 110 aa7.81□□□□□ -1.16
CLK3-204ENST00000483723 NDUFS5O43920 106 aa7.81□□□□□ -1.16
CLK3-204ENST00000483723 FAT3Q8TDW7 4589 aa7.79□□□□□ -1.16
CLK3-204ENST00000483723 LRP1Q07954 4544 aaKnown RBP7.79□□□□□ -1.16
CLK3-204ENST00000483723 TMEM258P61165 79 aa7.79□□□□□ -1.16
CLK3-204ENST00000483723 TNXBP22105 4242 aa7.79□□□□□ -1.16
CLK3-204ENST00000483723 KRTAP13-3Q3SY46 172 aa7.78□□□□□ -1.16
CLK3-204ENST00000483723 LINC00208Q96KT6 92 aa7.78□□□□□ -1.16
CLK3-204ENST00000483723 OXTP01178 125 aa7.77□□□□□ -1.17
CLK3-204ENST00000483723 Q5W150 140 aa7.75□□□□□ -1.17
CLK3-204ENST00000483723 RETNLBQ9BQ08 111 aa7.75□□□□□ -1.17
CLK3-204ENST00000483723 C1orf64Q8NEQ6 169 aa7.75□□□□□ -1.17
CLK3-204ENST00000483723 FP248Q71RG6 208 aaPredicted RBP7.72□□□□□ -1.17
CLK3-204ENST00000483723 FAM236DA0A1B0GTK5 79 aa7.68□□□□□ -1.18
CLK3-204ENST00000483723 A8MUU9 505 aa7.68□□□□□ -1.18
CLK3-204ENST00000483723 FAM236CP0DP71 79 aa7.68□□□□□ -1.18
CLK3-204ENST00000483723 C20orf166-AS1Q96NR2 134 aa7.68□□□□□ -1.18
CLK3-204ENST00000483723 C9orf92A6NGG3 77 aa7.66□□□□□ -1.18
CLK3-204ENST00000483723 LOC101927531A0A1B0GV80 90 aa7.66□□□□□ -1.18
CLK3-204ENST00000483723 ATP5EP56381 51 aaPredicted RBP7.66□□□□□ -1.18
CLK3-204ENST00000483723 DMBT1Q9UGM3 2413 aaPredicted RBP7.64□□□□□ -1.19
CLK3-204ENST00000483723 SPANXA2-OT1Q8N9U9 137 aa7.63□□□□□ -1.19
CLK3-204ENST00000483723 CYP4F30PQ9H0H9 118 aa7.63□□□□□ -1.19
CLK3-204ENST00000483723 MYCBP2O75592 4640 aa7.62□□□□□ -1.19
CLK3-204ENST00000483723 RPS28P62857 69 aaKnown RBP7.62□□□□□ -1.19
CLK3-204ENST00000483723 IGLV7-46A0A075B6I9 117 aa7.61□□□□□ -1.19
CLK3-204ENST00000483723 HERC1Q15751 4861 aa7.61□□□□□ -1.19
CLK3-204ENST00000483723 J3QL48 77 aa7.61□□□□□ -1.19
CLK3-204ENST00000483723 IGKV2-30P06310 120 aa7.61□□□□□ -1.19
CLK3-204ENST00000483723 Q75L30 129 aa7.6□□□□□ -1.19
CLK3-204ENST00000483723 PCOTHQ58A44 107 aa7.58□□□□□ -1.2
CLK3-204ENST00000483723 SERP1Q9Y6X1 66 aa7.55□□□□□ -1.2
CLK3-204ENST00000483723 XP32Q5T750 250 aa7.52□□□□□ -1.21
CLK3-204ENST00000483723 PRR4Q16378 134 aa7.51□□□□□ -1.21
CLK3-204ENST00000483723 IGKV2D-30A0A075B6S6 120 aa7.49□□□□□ -1.21
CLK3-204ENST00000483723 RPL37P61927 97 aaKnown RBP7.49□□□□□ -1.21
CLK3-204ENST00000483723 LCE2DQ5TA82 110 aaPredicted RBP7.49□□□□□ -1.21
CLK3-204ENST00000483723 HRES1P13985 223 aa7.49□□□□□ -1.21
CLK3-204ENST00000483723 TPRXLQ17RH7 258 aa7.49□□□□□ -1.21
CLK3-204ENST00000483723 C7orf65Q6ZTY9 151 aa7.48□□□□□ -1.21
CLK3-204ENST00000483723 ATP11AUNQ6ZP68 121 aa7.44□□□□□ -1.22
CLK3-204ENST00000483723 SPINK7P58062 85 aa7.41□□□□□ -1.22
CLK3-204ENST00000483723 DMAC1Q96GE9 116 aa7.4□□□□□ -1.23
CLK3-204ENST00000483723 SMIM26A0A096LP01 95 aa7.38□□□□□ -1.23
CLK3-204ENST00000483723 COA5Q86WW8 74 aa7.37□□□□□ -1.23
CLK3-204ENST00000483723 ACYP2P14621 99 aa7.36□□□□□ -1.23
CLK3-204ENST00000483723 HMCN2Q8NDA2 5059 aa7.34□□□□□ -1.23
CLK3-204ENST00000483723 C4orf26Q17RF5 130 aa7.31□□□□□ -1.24
CLK3-204ENST00000483723 A8MUN3 132 aa7.3□□□□□ -1.24
CLK3-204ENST00000483723 KRTAP3-1Q9BYR8 98 aa7.28□□□□□ -1.24
CLK3-204ENST00000483723 COX6B2Q6YFQ2 88 aa7.25□□□□□ -1.25
CLK3-204ENST00000483723 LPAP08519 4548 aa7.23□□□□□ -1.25
CLK3-204ENST00000483723 Q1T7F1 81 aa7.23□□□□□ -1.25
CLK3-204ENST00000483723 LRP2P98164 4655 aa7.22□□□□□ -1.25
CLK3-204ENST00000483723 SEC61BP60468 96 aaKnown RBP7.21□□□□□ -1.26
CLK3-204ENST00000483723 CHKB-CPT1BH3BT56 60 aa7.19□□□□□ -1.26
CLK3-204ENST00000483723 MPLKIPQ8TAP9 179 aa7.19□□□□□ -1.26
CLK3-204ENST00000483723 V9GYY9 64 aa7.18□□□□□ -1.26
CLK3-204ENST00000483723 KRTAP3-3Q9BYR6 98 aa7.17□□□□□ -1.26
CLK3-204ENST00000483723 KRTAP3-2Q9BYR7 98 aa7.17□□□□□ -1.26
CLK3-204ENST00000483723 UBR4Q5T4S7 5183 aa7.17□□□□□ -1.26
CLK3-204ENST00000483723 LINC01558Q9Y6Z2 57 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms