RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 LINC00472Q9H8W2 130 aa3.51□□□□□ -1.85
HDAC3-207ENST00000475549 TRBV20-1A0A075B6N2 111 aa3.5□□□□□ -1.85
HDAC3-207ENST00000475549 A0A1B0GV72 72 aa3.5□□□□□ -1.85
HDAC3-207ENST00000475549 SNCGO76070 127 aa3.5□□□□□ -1.85
HDAC3-207ENST00000475549 KRTAP4-2Q9BYR5 136 aa3.5□□□□□ -1.85
HDAC3-207ENST00000475549 TRBV7-4A0A0J9YYF1 115 aa3.49□□□□□ -1.85
HDAC3-207ENST00000475549 K7ERJ3 54 aa3.49□□□□□ -1.85
HDAC3-207ENST00000475549 IGKV4-1P06312 121 aa3.49□□□□□ -1.85
HDAC3-207ENST00000475549 ANKRD29Q8N6D5 301 aa3.49□□□□□ -1.85
HDAC3-207ENST00000475549 VAMP8Q9BV40 100 aa3.49□□□□□ -1.85
HDAC3-207ENST00000475549 KRTAP9-3Q9BYQ3 159 aa3.49□□□□□ -1.85
HDAC3-207ENST00000475549 FCGBPQ9Y6R7 5405 aaPredicted RBP3.49□□□□□ -1.85
HDAC3-207ENST00000475549 SIGMAR1Q99720 223 aa3.48□□□□□ -1.85
HDAC3-207ENST00000475549 ORMDL1Q9P0S3 153 aa3.47□□□□□ -1.85
HDAC3-207ENST00000475549 IGHV6-1A0A0B4J1U7 121 aa3.46□□□□□ -1.86
HDAC3-207ENST00000475549 CCKP06307 115 aa3.46□□□□□ -1.86
HDAC3-207ENST00000475549 KRTAP4-11Q9BYQ6 195 aa3.46□□□□□ -1.86
HDAC3-207ENST00000475549 TMEM256-PLSCR3K7ERE1 68 aa3.45□□□□□ -1.86
HDAC3-207ENST00000475549 PYY3Q5JQD4 70 aa3.45□□□□□ -1.86
HDAC3-207ENST00000475549 SYNE2Q8WXH0 6885 aaKnown RBP3.44□□□□□ -1.86
HDAC3-207ENST00000475549 FAM236DA0A1B0GTK5 79 aa3.44□□□□□ -1.86
HDAC3-207ENST00000475549 FAM236CP0DP71 79 aa3.44□□□□□ -1.86
HDAC3-207ENST00000475549 PSMB2P49721 201 aa3.44□□□□□ -1.86
HDAC3-207ENST00000475549 KRTAP10-10P60014 251 aa3.44□□□□□ -1.86
HDAC3-207ENST00000475549 HSD52Q0P140 79 aa3.44□□□□□ -1.86
HDAC3-207ENST00000475549 UBE2V1Q13404 147 aa3.44□□□□□ -1.86
HDAC3-207ENST00000475549 H3BQ85 93 aa3.43□□□□□ -1.86
HDAC3-207ENST00000475549 DNAL4O96015 105 aa3.43□□□□□ -1.86
HDAC3-207ENST00000475549 TRACP01848 142 aa3.43□□□□□ -1.86
HDAC3-207ENST00000475549 LCE5AQ5TCM9 118 aa3.43□□□□□ -1.86
HDAC3-207ENST00000475549 RBM12B-AS1Q9P1G2 102 aa3.43□□□□□ -1.86
HDAC3-207ENST00000475549 A0A1B0GVX0 72 aa3.42□□□□□ -1.86
HDAC3-207ENST00000475549 A0A0A0MQY5 61 aa3.41□□□□□ -1.86
HDAC3-207ENST00000475549 COX6CP09669 75 aa3.41□□□□□ -1.86
HDAC3-207ENST00000475549 SPINK7P58062 85 aa3.41□□□□□ -1.86
HDAC3-207ENST00000475549 RBM3P98179 157 aaKnown RBP3.41□□□□□ -1.86
HDAC3-207ENST00000475549 VPS25Q9BRG1 176 aa3.41□□□□□ -1.86
HDAC3-207ENST00000475549 C8orf87E5RJ46 101 aa3.4□□□□□ -1.87
HDAC3-207ENST00000475549 Q6ZQT0 140 aa3.4□□□□□ -1.87
HDAC3-207ENST00000475549 ZCCHC13Q8WW36 166 aaKnown RBP3.4□□□□□ -1.87
HDAC3-207ENST00000475549 BAALC-AS2P0C853 105 aa3.39□□□□□ -1.87
HDAC3-207ENST00000475549 Q8N9P0 234 aaPredicted RBP3.39□□□□□ -1.87
HDAC3-207ENST00000475549 SCGB1C2P0DMR2 95 aa3.38□□□□□ -1.87
HDAC3-207ENST00000475549 DSCR8Q96T75 97 aa3.38□□□□□ -1.87
HDAC3-207ENST00000475549 UQCR10Q9UDW1 63 aa3.38□□□□□ -1.87
HDAC3-207ENST00000475549 C9JAW5 83 aa3.37□□□□□ -1.87
HDAC3-207ENST00000475549 KRTAP19-6Q3LI70 58 aa3.37□□□□□ -1.87
HDAC3-207ENST00000475549 MACF1Q9UPN3 7388 aaKnown RBP3.36□□□□□ -1.87
HDAC3-207ENST00000475549 IGKV3D-7A0A0C4DH55 119 aa3.36□□□□□ -1.87
HDAC3-207ENST00000475549 J3KT08 172 aa3.36□□□□□ -1.87
HDAC3-207ENST00000475549 A8MWP4 228 aa3.35□□□□□ -1.87
HDAC3-207ENST00000475549 MTURNQ8N3F0 131 aa3.35□□□□□ -1.87
HDAC3-207ENST00000475549 C8orf17Q9NRJ1 99 aa3.35□□□□□ -1.87
HDAC3-207ENST00000475549 LOC110117498A0A087WWA1 95 aa3.34□□□□□ -1.87
HDAC3-207ENST00000475549 WFDC13Q8IUB5 93 aa3.34□□□□□ -1.87
HDAC3-207ENST00000475549 NAA38Q9BRA0 125 aaKnown RBP3.34□□□□□ -1.87
HDAC3-207ENST00000475549 NDUFB1O75438 58 aa3.33□□□□□ -1.88
HDAC3-207ENST00000475549 Q6ZVQ6 151 aa3.33□□□□□ -1.88
HDAC3-207ENST00000475549 PRR15Q8IV56 129 aa3.32□□□□□ -1.88
HDAC3-207ENST00000475549 C14orf132Q9NPU4 83 aa3.32□□□□□ -1.88
HDAC3-207ENST00000475549 A0A1B0GW54 56 aa3.31□□□□□ -1.88
HDAC3-207ENST00000475549 JMJD7-PLA2G4BH0Y9G9 81 aa3.31□□□□□ -1.88
HDAC3-207ENST00000475549 ATXN8Q156A1 80 aa3.31□□□□□ -1.88
HDAC3-207ENST00000475549 LYRM7Q5U5X0 104 aa3.31□□□□□ -1.88
HDAC3-207ENST00000475549 MMP24-AS1A0A0U1RRL7 71 aa3.3□□□□□ -1.88
HDAC3-207ENST00000475549 H1FX-AS1Q4G0G2 97 aa3.29□□□□□ -1.88
HDAC3-207ENST00000475549 Q5W150 140 aa3.29□□□□□ -1.88
HDAC3-207ENST00000475549 K7EQZ3 153 aa3.28□□□□□ -1.88
HDAC3-207ENST00000475549 PDE6GP18545 87 aa3.28□□□□□ -1.88
HDAC3-207ENST00000475549 NREPQ16612 68 aa3.28□□□□□ -1.88
HDAC3-207ENST00000475549 TMEM254Q8TBM7 123 aa3.28□□□□□ -1.88
HDAC3-207ENST00000475549 MRPL34Q9BQ48 92 aaKnown RBP3.28□□□□□ -1.88
HDAC3-207ENST00000475549 hDV103S1A0JD37 113 aa3.26□□□□□ -1.89
HDAC3-207ENST00000475549 M0R143 59 aa3.26□□□□□ -1.89
HDAC3-207ENST00000475549 LINC00846Q9NV44 126 aa3.25□□□□□ -1.89
HDAC3-207ENST00000475549 KRTAP6-3Q3LI67 103 aa3.24□□□□□ -1.89
HDAC3-207ENST00000475549 IGKV2D-30A0A075B6S6 120 aa3.23□□□□□ -1.89
HDAC3-207ENST00000475549 NDUFS5O43920 106 aa3.23□□□□□ -1.89
HDAC3-207ENST00000475549 IGKV2-30P06310 120 aa3.23□□□□□ -1.89
HDAC3-207ENST00000475549 Q8N9L7 120 aa3.23□□□□□ -1.89
HDAC3-207ENST00000475549 C4orf26Q17RF5 130 aa3.22□□□□□ -1.89
HDAC3-207ENST00000475549 BPY2O14599 106 aa3.21□□□□□ -1.9
HDAC3-207ENST00000475549 BATFQ16520 125 aa3.21□□□□□ -1.9
HDAC3-207ENST00000475549 KRTAP15-1Q3LI76 137 aa3.21□□□□□ -1.9
HDAC3-207ENST00000475549 H3BT86 120 aa3.2□□□□□ -1.9
HDAC3-207ENST00000475549 TAX1BP3O14907 124 aa3.2□□□□□ -1.9
HDAC3-207ENST00000475549 MT1BP07438 61 aa3.2□□□□□ -1.9
HDAC3-207ENST00000475549 C7orf65Q6ZTY9 151 aa3.2□□□□□ -1.9
HDAC3-207ENST00000475549 NEBP20929 6669 aa3.2□□□□□ -1.9
HDAC3-207ENST00000475549 A0A1W2PPM0 123 aa3.19□□□□□ -1.9
HDAC3-207ENST00000475549 SMIM6P0DI80 62 aa3.19□□□□□ -1.9
HDAC3-207ENST00000475549 CASC2Q6XLA1 102 aa3.19□□□□□ -1.9
HDAC3-207ENST00000475549 HCG22E2RYF7 251 aa3.18□□□□□ -1.9
HDAC3-207ENST00000475549 C5orf47Q569G3 176 aa3.18□□□□□ -1.9
HDAC3-207ENST00000475549 CXCL6P80162 114 aa3.16□□□□□ -1.9
HDAC3-207ENST00000475549 KRTAP19-8Q3LI54 63 aa3.16□□□□□ -1.9
HDAC3-207ENST00000475549 TSTD3H0UI37 97 aa3.15□□□□□ -1.91
HDAC3-207ENST00000475549 SPRR2GQ9BYE4 73 aa3.15□□□□□ -1.91
HDAC3-207ENST00000475549 LCA10Q71F78 164 aa3.14□□□□□ -1.91
HDAC3-207ENST00000475549 PRO0461Q9UI25 63 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms