RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 IGLV5-52A0A0A0MRZ9 124 aa8.57□□□□□ -1.04
LIG1-202ENST00000427526 C7orf65Q6ZTY9 151 aa8.57□□□□□ -1.04
LIG1-202ENST00000427526 DNAH8Q96JB1 4490 aa8.57□□□□□ -1.04
LIG1-202ENST00000427526 FRAS1Q86XX4 4008 aa8.57□□□□□ -1.04
LIG1-202ENST00000427526 PSORS1C2Q9UIG4 136 aa8.56□□□□□ -1.04
LIG1-202ENST00000427526 ZNF706Q9Y5V0 76 aaPredicted RBP8.55□□□□□ -1.04
LIG1-202ENST00000427526 DNAH17Q9UFH2 4485 aa8.54□□□□□ -1.04
LIG1-202ENST00000427526 PLAC8Q9NZF1 115 aa8.54□□□□□ -1.04
LIG1-202ENST00000427526 Q8N9P0 234 aaPredicted RBP8.54□□□□□ -1.04
LIG1-202ENST00000427526 PRR15LQ9BU68 103 aa8.53□□□□□ -1.04
LIG1-202ENST00000427526 C8orf17Q9NRJ1 99 aa8.53□□□□□ -1.04
LIG1-202ENST00000427526 ZNF861PO60384 105 aa8.52□□□□□ -1.05
LIG1-202ENST00000427526 LIMD2Q9BT23 127 aa8.52□□□□□ -1.05
LIG1-202ENST00000427526 TP53AIP1Q9HCN2 124 aa8.52□□□□□ -1.05
LIG1-202ENST00000427526 ANAPC11Q9NYG5 84 aa8.51□□□□□ -1.05
LIG1-202ENST00000427526 KRTAP10-2P60368 255 aa8.51□□□□□ -1.05
LIG1-202ENST00000427526 A0A1B0GVX0 72 aa8.5□□□□□ -1.05
LIG1-202ENST00000427526 IGLV7-46A0A075B6I9 117 aa8.49□□□□□ -1.05
LIG1-202ENST00000427526 A6NED7 52 aa8.49□□□□□ -1.05
LIG1-202ENST00000427526 Q75L30 129 aa8.48□□□□□ -1.05
LIG1-202ENST00000427526 IGHV6-1A0A0B4J1U7 121 aa8.48□□□□□ -1.05
LIG1-202ENST00000427526 CDC42SE1Q9NRR8 79 aa8.45□□□□□ -1.06
LIG1-202ENST00000427526 A0A087X002 238 aa8.45□□□□□ -1.06
LIG1-202ENST00000427526 NOTCH2NLQ7Z3S9 236 aa8.45□□□□□ -1.06
LIG1-202ENST00000427526 HYDINQ4G0P3 5121 aa8.45□□□□□ -1.06
LIG1-202ENST00000427526 MRPL34Q9BQ48 92 aaKnown RBP8.44□□□□□ -1.06
LIG1-202ENST00000427526 DNAH6Q9C0G6 4158 aa8.44□□□□□ -1.06
LIG1-202ENST00000427526 PRR26Q8N8Z3 221 aa8.43□□□□□ -1.06
LIG1-202ENST00000427526 CDK2AP2O75956 126 aa8.43□□□□□ -1.06
LIG1-202ENST00000427526 PCOTHQ58A44 107 aa8.43□□□□□ -1.06
LIG1-202ENST00000427526 ALMS1Q8TCU4 4167 aa8.42□□□□□ -1.06
LIG1-202ENST00000427526 COA5Q86WW8 74 aa8.41□□□□□ -1.06
LIG1-202ENST00000427526 LOC101927531A0A1B0GV80 90 aa8.41□□□□□ -1.06
LIG1-202ENST00000427526 IGLV7-43P04211 117 aa8.41□□□□□ -1.06
LIG1-202ENST00000427526 CIRBP-AS1Q8TBR5 109 aa8.41□□□□□ -1.06
LIG1-202ENST00000427526 DNAH11Q96DT5 4516 aa8.4□□□□□ -1.06
LIG1-202ENST00000427526 KRTAP10-1P60331 282 aa8.39□□□□□ -1.07
LIG1-202ENST00000427526 DNAH5Q8TE73 4624 aa8.38□□□□□ -1.07
LIG1-202ENST00000427526 PRAC1Q96KF2 57 aa8.35□□□□□ -1.07
LIG1-202ENST00000427526 FAT2Q9NYQ8 4349 aa8.35□□□□□ -1.07
LIG1-202ENST00000427526 LINC00313P59037 77 aa8.35□□□□□ -1.07
LIG1-202ENST00000427526 PKD1P98161 4303 aa8.34□□□□□ -1.07
LIG1-202ENST00000427526 SPINK6Q6UWN8 80 aa8.34□□□□□ -1.07
LIG1-202ENST00000427526 KRTAP13-3Q3SY46 172 aa8.33□□□□□ -1.08
LIG1-202ENST00000427526 LINC01554Q52M75 96 aa8.33□□□□□ -1.08
LIG1-202ENST00000427526 Q5W150 140 aa8.32□□□□□ -1.08
LIG1-202ENST00000427526 Q6ZSA8 131 aa8.32□□□□□ -1.08
LIG1-202ENST00000427526 SSBP3-AS1Q7Z2R9 100 aa8.32□□□□□ -1.08
LIG1-202ENST00000427526 HRES1P13985 223 aa8.29□□□□□ -1.08
LIG1-202ENST00000427526 LRP1BQ9NZR2 4599 aa8.26□□□□□ -1.09
LIG1-202ENST00000427526 SPINK7P58062 85 aa8.26□□□□□ -1.09
LIG1-202ENST00000427526 ADM2Q7Z4H4 148 aa8.26□□□□□ -1.09
LIG1-202ENST00000427526 LINC01558Q9Y6Z2 57 aa8.25□□□□□ -1.09
LIG1-202ENST00000427526 SACSQ9NZJ4 4579 aa8.25□□□□□ -1.09
LIG1-202ENST00000427526 SPAG11AQ6PDA7 123 aa8.24□□□□□ -1.09
LIG1-202ENST00000427526 KRTAP13-2Q52LG2 175 aa8.23□□□□□ -1.09
LIG1-202ENST00000427526 PLA2G1BP04054 148 aaKnown RBP8.18□□□□□ -1.1
LIG1-202ENST00000427526 PKHD1P08F94 4074 aa8.18□□□□□ -1.1
LIG1-202ENST00000427526 FAM229AH3BQW9 127 aa8.15□□□□□ -1.11
LIG1-202ENST00000427526 VPS13BQ7Z7G8 4022 aa8.14□□□□□ -1.11
LIG1-202ENST00000427526 KRTAP1-4P0C5Y4 121 aa8.14□□□□□ -1.11
LIG1-202ENST00000427526 KRTAP16-1A8MUX0 517 aa8.13□□□□□ -1.11
LIG1-202ENST00000427526 ACYP2P14621 99 aa8.13□□□□□ -1.11
LIG1-202ENST00000427526 DMAC1Q96GE9 116 aa8.12□□□□□ -1.11
LIG1-202ENST00000427526 A0A1B0GVY2 172 aa8.11□□□□□ -1.11
LIG1-202ENST00000427526 IGKV2-30P06310 120 aa8.11□□□□□ -1.11
LIG1-202ENST00000427526 SMR3BP02814 79 aaPredicted RBP8.1□□□□□ -1.11
LIG1-202ENST00000427526 RETNLBQ9BQ08 111 aa8.09□□□□□ -1.11
LIG1-202ENST00000427526 DYNC1H1Q14204 4646 aaKnown RBP8.07□□□□□ -1.12
LIG1-202ENST00000427526 KMT2CQ8NEZ4 4911 aaKnown RBP8.06□□□□□ -1.12
LIG1-202ENST00000427526 RYR2Q92736 4967 aa8.04□□□□□ -1.12
LIG1-202ENST00000427526 TYMSOSQ8TAI1 123 aa7.99□□□□□ -1.13
LIG1-202ENST00000427526 SPINK1P00995 79 aa7.99□□□□□ -1.13
LIG1-202ENST00000427526 CSAG1Q6PB30 78 aa7.98□□□□□ -1.13
LIG1-202ENST00000427526 IGKV2D-30A0A075B6S6 120 aa7.96□□□□□ -1.14
LIG1-202ENST00000427526 FAT1Q14517 4588 aa7.96□□□□□ -1.14
LIG1-202ENST00000427526 APOBP04114 4563 aaKnown RBP7.95□□□□□ -1.14
LIG1-202ENST00000427526 KRTAP10-4P60372 401 aaPredicted RBP7.95□□□□□ -1.14
LIG1-202ENST00000427526 A0A1B0GU69 56 aa7.91□□□□□ -1.14
LIG1-202ENST00000427526 RPS29P62273 56 aaKnown RBP7.9□□□□□ -1.14
LIG1-202ENST00000427526 LINC00304Q8N9R0 145 aa7.88□□□□□ -1.15
LIG1-202ENST00000427526 SPATA8Q6RVD6 105 aa7.87□□□□□ -1.15
LIG1-202ENST00000427526 RYR3Q15413 4870 aa7.82□□□□□ -1.16
LIG1-202ENST00000427526 PKHD1L1Q86WI1 4243 aa7.8□□□□□ -1.16
LIG1-202ENST00000427526 UQCR11O14957 56 aa7.78□□□□□ -1.16
LIG1-202ENST00000427526 ROMO1P60602 79 aa7.78□□□□□ -1.16
LIG1-202ENST00000427526 Q8N1X5 172 aa7.78□□□□□ -1.16
LIG1-202ENST00000427526 MIR22HGQ0VDD5 57 aa7.77□□□□□ -1.17
LIG1-202ENST00000427526 C20orf166-AS1Q96NR2 134 aa7.75□□□□□ -1.17
LIG1-202ENST00000427526 A8MUU9 505 aa7.75□□□□□ -1.17
LIG1-202ENST00000427526 Q5VSD8 79 aa7.73□□□□□ -1.17
LIG1-202ENST00000427526 KRTAP17-1Q9BYP8 105 aa7.73□□□□□ -1.17
LIG1-202ENST00000427526 C9orf92A6NGG3 77 aa7.72□□□□□ -1.17
LIG1-202ENST00000427526 HSPG2P98160 4391 aa7.72□□□□□ -1.17
LIG1-202ENST00000427526 LRP1Q07954 4544 aaKnown RBP7.67□□□□□ -1.18
LIG1-202ENST00000427526 KRTAP3-1Q9BYR8 98 aa7.67□□□□□ -1.18
LIG1-202ENST00000427526 KRTAP25-1Q3LHN0 102 aa7.64□□□□□ -1.19
LIG1-202ENST00000427526 RYR1P21817 5038 aa7.64□□□□□ -1.19
LIG1-202ENST00000427526 FLG2Q5D862 2391 aaPredicted RBP7.64□□□□□ -1.19
LIG1-202ENST00000427526 P0C880 135 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms