RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 A8MWP4 228 aa5.26□□□□□ -1.57
USP40-203ENST00000427112 C1orf134Q5TEV5 83 aa5.26□□□□□ -1.57
USP40-203ENST00000427112 NBDYA0A0U1RRE5 68 aa5.25□□□□□ -1.57
USP40-203ENST00000427112 C9orf163Q8N9P6 203 aa5.24□□□□□ -1.57
USP40-203ENST00000427112 PSORS1C2Q9UIG4 136 aa5.24□□□□□ -1.57
USP40-203ENST00000427112 K7ERS5 55 aa5.24□□□□□ -1.57
USP40-203ENST00000427112 LINC00472Q9H8W2 130 aa5.24□□□□□ -1.57
USP40-203ENST00000427112 DNAH1Q9P2D7 4330 aa5.23□□□□□ -1.57
USP40-203ENST00000427112 MMP24-AS1A0A0U1RRL7 71 aa5.23□□□□□ -1.57
USP40-203ENST00000427112 LY6G6CO95867 125 aa5.23□□□□□ -1.57
USP40-203ENST00000427112 STARD9Q9P2P6 4700 aa5.23□□□□□ -1.57
USP40-203ENST00000427112 KRTAP29-1A8MX34 341 aaPredicted RBP5.23□□□□□ -1.57
USP40-203ENST00000427112 IGKV2D-30A0A075B6S6 120 aa5.22□□□□□ -1.57
USP40-203ENST00000427112 IGKV2-30P06310 120 aa5.22□□□□□ -1.57
USP40-203ENST00000427112 PRKDCP78527 4128 aaKnown RBP5.21□□□□□ -1.58
USP40-203ENST00000427112 MIR22HGQ0VDD5 57 aa5.21□□□□□ -1.58
USP40-203ENST00000427112 RTL8CO15255 209 aa5.2□□□□□ -1.58
USP40-203ENST00000427112 C8orf17Q9NRJ1 99 aa5.19□□□□□ -1.58
USP40-203ENST00000427112 C14orf177Q52M58 125 aa5.18□□□□□ -1.58
USP40-203ENST00000427112 LCE6AA0A183 80 aa5.18□□□□□ -1.58
USP40-203ENST00000427112 IGLV5-52A0A0A0MRZ9 124 aa5.18□□□□□ -1.58
USP40-203ENST00000427112 Q5W150 140 aa5.18□□□□□ -1.58
USP40-203ENST00000427112 A0A087WTM6 91 aa5.17□□□□□ -1.58
USP40-203ENST00000427112 UQCR11O14957 56 aa5.17□□□□□ -1.58
USP40-203ENST00000427112 ACYP2P14621 99 aa5.17□□□□□ -1.58
USP40-203ENST00000427112 Q75L30 129 aa5.17□□□□□ -1.58
USP40-203ENST00000427112 DNAH3Q8TD57 4116 aa5.16□□□□□ -1.58
USP40-203ENST00000427112 DNAH8Q96JB1 4490 aa5.15□□□□□ -1.58
USP40-203ENST00000427112 Q96NJ1 140 aa5.15□□□□□ -1.58
USP40-203ENST00000427112 DNAH6Q9C0G6 4158 aa5.15□□□□□ -1.58
USP40-203ENST00000427112 A0A1B0GW54 56 aa5.14□□□□□ -1.59
USP40-203ENST00000427112 DNAH11Q96DT5 4516 aa5.14□□□□□ -1.59
USP40-203ENST00000427112 SPACA4Q8TDM5 124 aa5.14□□□□□ -1.59
USP40-203ENST00000427112 A0A1B0GVX0 72 aa5.13□□□□□ -1.59
USP40-203ENST00000427112 WWC2-AS2Q96NR7 200 aa5.13□□□□□ -1.59
USP40-203ENST00000427112 DNAH17Q9UFH2 4485 aa5.13□□□□□ -1.59
USP40-203ENST00000427112 A6NN06 94 aa5.13□□□□□ -1.59
USP40-203ENST00000427112 HRES1P13985 223 aa5.13□□□□□ -1.59
USP40-203ENST00000427112 Q6ZRN7 208 aaPredicted RBP5.13□□□□□ -1.59
USP40-203ENST00000427112 MRPL34Q9BQ48 92 aaKnown RBP5.12□□□□□ -1.59
USP40-203ENST00000427112 KRTAP10-2P60368 255 aa5.11□□□□□ -1.59
USP40-203ENST00000427112 H3BPC8 53 aa5.11□□□□□ -1.59
USP40-203ENST00000427112 VPS13DQ5THJ4 4388 aa5.1□□□□□ -1.59
USP40-203ENST00000427112 DNAH2Q9P225 4427 aa5.1□□□□□ -1.59
USP40-203ENST00000427112 ZNF861PO60384 105 aa5.1□□□□□ -1.59
USP40-203ENST00000427112 KRTAP13-1Q8IUC0 172 aa5.1□□□□□ -1.59
USP40-203ENST00000427112 SPRR1BP22528 89 aa5.09□□□□□ -1.59
USP40-203ENST00000427112 NUPR2A6NF83 97 aa5.09□□□□□ -1.6
USP40-203ENST00000427112 IGLV7-46A0A075B6I9 117 aa5.08□□□□□ -1.6
USP40-203ENST00000427112 SPANXA2-OT1Q8N9U9 137 aa5.08□□□□□ -1.6
USP40-203ENST00000427112 Q6ZR54 194 aa5.07□□□□□ -1.6
USP40-203ENST00000427112 LINC01558Q9Y6Z2 57 aa5.07□□□□□ -1.6
USP40-203ENST00000427112 HECTD4Q9Y4D8 3996 aa5.07□□□□□ -1.6
USP40-203ENST00000427112 SMR3BP02814 79 aaPredicted RBP5.07□□□□□ -1.6
USP40-203ENST00000427112 TP53AIP1Q9HCN2 124 aa5.07□□□□□ -1.6
USP40-203ENST00000427112 IGLV7-43P04211 117 aa5.05□□□□□ -1.6
USP40-203ENST00000427112 Q8N1X5 172 aa5.05□□□□□ -1.6
USP40-203ENST00000427112 LRP1BQ9NZR2 4599 aa5.04□□□□□ -1.6
USP40-203ENST00000427112 HYDINQ4G0P3 5121 aa5.01□□□□□ -1.61
USP40-203ENST00000427112 A0A0D9SG42 100 aa5.01□□□□□ -1.61
USP40-203ENST00000427112 C9orf92A6NGG3 77 aa5.01□□□□□ -1.61
USP40-203ENST00000427112 KRTAP10-1P60331 282 aa4.99□□□□□ -1.61
USP40-203ENST00000427112 KRTAP13-2Q52LG2 175 aa4.98□□□□□ -1.61
USP40-203ENST00000427112 PLAC8Q9NZF1 115 aa4.98□□□□□ -1.61
USP40-203ENST00000427112 LINC00483Q53H64 154 aa4.98□□□□□ -1.61
USP40-203ENST00000427112 A0A0A0MQY5 61 aa4.97□□□□□ -1.61
USP40-203ENST00000427112 PLA2G1BP04054 148 aaKnown RBP4.97□□□□□ -1.61
USP40-203ENST00000427112 FAT2Q9NYQ8 4349 aa4.95□□□□□ -1.62
USP40-203ENST00000427112 NDUFAF8A1L188 74 aa4.95□□□□□ -1.62
USP40-203ENST00000427112 FAT1Q14517 4588 aa4.94□□□□□ -1.62
USP40-203ENST00000427112 ALMS1Q8TCU4 4167 aa4.93□□□□□ -1.62
USP40-203ENST00000427112 DNAH5Q8TE73 4624 aa4.93□□□□□ -1.62
USP40-203ENST00000427112 PKHD1P08F94 4074 aa4.93□□□□□ -1.62
USP40-203ENST00000427112 VPS13BQ7Z7G8 4022 aa4.93□□□□□ -1.62
USP40-203ENST00000427112 ASB16-AS1Q495Z4 193 aa4.93□□□□□ -1.62
USP40-203ENST00000427112 TYMSOSQ8TAI1 123 aa4.92□□□□□ -1.62
USP40-203ENST00000427112 DYNC2H1Q8NCM8 4307 aaKnown RBP4.88□□□□□ -1.63
USP40-203ENST00000427112 KRTAP16-1A8MUX0 517 aa4.88□□□□□ -1.63
USP40-203ENST00000427112 FAM229AH3BQW9 127 aa4.88□□□□□ -1.63
USP40-203ENST00000427112 ROMO1P60602 79 aa4.88□□□□□ -1.63
USP40-203ENST00000427112 MYCBP2O75592 4640 aa4.88□□□□□ -1.63
USP40-203ENST00000427112 KRTAP13-3Q3SY46 172 aa4.86□□□□□ -1.63
USP40-203ENST00000427112 A0A1B0GU33 70 aa4.84□□□□□ -1.63
USP40-203ENST00000427112 DMAC1Q96GE9 116 aa4.84□□□□□ -1.64
USP40-203ENST00000427112 SPATA8Q6RVD6 105 aa4.83□□□□□ -1.64
USP40-203ENST00000427112 KRTAP1-4P0C5Y4 121 aa4.82□□□□□ -1.64
USP40-203ENST00000427112 KRTAP25-1Q3LHN0 102 aa4.81□□□□□ -1.64
USP40-203ENST00000427112 LUZP6Q538Z0 58 aa4.8□□□□□ -1.64
USP40-203ENST00000427112 LINC00304Q8N9R0 145 aa4.79□□□□□ -1.64
USP40-203ENST00000427112 A8MUU9 505 aa4.77□□□□□ -1.65
USP40-203ENST00000427112 LRP1Q07954 4544 aaKnown RBP4.76□□□□□ -1.65
USP40-203ENST00000427112 KMT2CQ8NEZ4 4911 aaKnown RBP4.75□□□□□ -1.65
USP40-203ENST00000427112 RYR3Q15413 4870 aa4.75□□□□□ -1.65
USP40-203ENST00000427112 PKD1P98161 4303 aa4.73□□□□□ -1.65
USP40-203ENST00000427112 DYNC1H1Q14204 4646 aaKnown RBP4.73□□□□□ -1.65
USP40-203ENST00000427112 FAT3Q8TDW7 4589 aa4.72□□□□□ -1.65
USP40-203ENST00000427112 C10orf95Q9H7T3 257 aa4.7□□□□□ -1.66
USP40-203ENST00000427112 Q6ZSA8 131 aa4.69□□□□□ -1.66
USP40-203ENST00000427112 C20orf166-AS1Q96NR2 134 aa4.68□□□□□ -1.66
USP40-203ENST00000427112 H0YAA0 97 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms