RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 A8MU10 97 aa6.34□□□□□ -1.4
TTC28-201ENST00000397906 ASB16-AS1Q495Z4 193 aa6.32□□□□□ -1.4
TTC28-201ENST00000397906 ITPR1Q14643 2758 aa6.31□□□□□ -1.4
TTC28-201ENST00000397906 DMXL2Q8TDJ6 3036 aa6.31□□□□□ -1.4
TTC28-201ENST00000397906 TACC2O95359 2948 aa6.31□□□□□ -1.4
TTC28-201ENST00000397906 UTP20O75691 2785 aaKnown RBP6.3□□□□□ -1.4
TTC28-201ENST00000397906 STAB2Q8WWQ8 2551 aa6.3□□□□□ -1.4
TTC28-201ENST00000397906 ASPMQ8IZT6 3477 aa6.3□□□□□ -1.4
TTC28-201ENST00000397906 KMT2BQ9UMN6 2715 aaPredicted RBP6.29□□□□□ -1.4
TTC28-201ENST00000397906 A0A1B0GVY2 172 aa6.29□□□□□ -1.4
TTC28-201ENST00000397906 KRTAP13-1Q8IUC0 172 aa6.28□□□□□ -1.4
TTC28-201ENST00000397906 ADGRG4Q8IZF6 3080 aa6.27□□□□□ -1.41
TTC28-201ENST00000397906 NSD1Q96L73 2696 aaPredicted RBP6.26□□□□□ -1.41
TTC28-201ENST00000397906 TNRC18O15417 2968 aaPredicted RBP6.26□□□□□ -1.41
TTC28-201ENST00000397906 APCP25054 2843 aa6.21□□□□□ -1.41
TTC28-201ENST00000397906 HIVEP1P15822 2718 aa6.2□□□□□ -1.42
TTC28-201ENST00000397906 ASH1LQ9NR48 2969 aaKnown RBP6.19□□□□□ -1.42
TTC28-201ENST00000397906 H3BS24 57 aa6.18□□□□□ -1.42
TTC28-201ENST00000397906 WDFY3Q8IZQ1 3526 aa6.17□□□□□ -1.42
TTC28-201ENST00000397906 DMXL1Q9Y485 3027 aa6.17□□□□□ -1.42
TTC28-201ENST00000397906 FLNCQ14315 2725 aa6.16□□□□□ -1.42
TTC28-201ENST00000397906 XP32Q5T750 250 aa6.15□□□□□ -1.42
TTC28-201ENST00000397906 KRTAP10-8P60410 259 aa6.15□□□□□ -1.43
TTC28-201ENST00000397906 NBEAQ8NFP9 2946 aa6.14□□□□□ -1.43
TTC28-201ENST00000397906 TNP1P09430 55 aa6.14□□□□□ -1.43
TTC28-201ENST00000397906 ZZEF1O43149 2961 aa6.11□□□□□ -1.43
TTC28-201ENST00000397906 LOC400499M0QZD8 3231 aa6.1□□□□□ -1.43
TTC28-201ENST00000397906 KRTAP1-4P0C5Y4 121 aa6.09□□□□□ -1.43
TTC28-201ENST00000397906 C10orf95Q9H7T3 257 aa6.08□□□□□ -1.44
TTC28-201ENST00000397906 KRTAP25-1Q3LHN0 102 aa6.07□□□□□ -1.44
TTC28-201ENST00000397906 ZFHX4Q86UP3 3567 aa6.07□□□□□ -1.44
TTC28-201ENST00000397906 KRTAP10-10P60014 251 aa6.07□□□□□ -1.44
TTC28-201ENST00000397906 TENM4Q6N022 2769 aa6.06□□□□□ -1.44
TTC28-201ENST00000397906 RELNP78509 3460 aa6.06□□□□□ -1.44
TTC28-201ENST00000397906 NBPF19A0A087WUL8 3843 aa6.03□□□□□ -1.44
TTC28-201ENST00000397906 CELSR2Q9HCU4 2923 aa6.02□□□□□ -1.45
TTC28-201ENST00000397906 TPRXLQ17RH7 258 aa6.01□□□□□ -1.45
TTC28-201ENST00000397906 DCHS1Q96JQ0 3298 aa5.96□□□□□ -1.46
TTC28-201ENST00000397906 A6NN06 94 aa5.96□□□□□ -1.46
TTC28-201ENST00000397906 DCHS2Q6V1P9 2916 aa5.95□□□□□ -1.46
TTC28-201ENST00000397906 LAMA5O15230 3695 aa5.95□□□□□ -1.46
TTC28-201ENST00000397906 HRNRQ86YZ3 2850 aaPredicted RBP5.91□□□□□ -1.46
TTC28-201ENST00000397906 NDUFAF8A1L188 74 aa5.91□□□□□ -1.46
TTC28-201ENST00000397906 KRTAP13-3Q3SY46 172 aa5.9□□□□□ -1.46
TTC28-201ENST00000397906 PRO2289Q9P1D8 64 aa5.88□□□□□ -1.47
TTC28-201ENST00000397906 KRTAP16-1A8MUX0 517 aa5.87□□□□□ -1.47
TTC28-201ENST00000397906 DMDP11532 3685 aa5.87□□□□□ -1.47
TTC28-201ENST00000397906 ZANQ9Y493 2812 aa5.87□□□□□ -1.47
TTC28-201ENST00000397906 NIPBLQ6KC79 2804 aaeCLIP5.86□□□□□ -1.47
TTC28-201ENST00000397906 CELSR1Q9NYQ6 3014 aa5.85□□□□□ -1.47
TTC28-201ENST00000397906 NF1P21359 2839 aa5.85□□□□□ -1.47
TTC28-201ENST00000397906 TENM2Q9NT68 2774 aa5.84□□□□□ -1.47
TTC28-201ENST00000397906 TENM1Q9UKZ4 2725 aa5.84□□□□□ -1.47
TTC28-201ENST00000397906 CSMD1Q96PZ7 3565 aa5.82□□□□□ -1.48
TTC28-201ENST00000397906 FBN2P35556 2912 aa5.8□□□□□ -1.48
TTC28-201ENST00000397906 H0YAA0 97 aa5.79□□□□□ -1.48
TTC28-201ENST00000397906 P0C880 135 aa5.78□□□□□ -1.48
TTC28-201ENST00000397906 PP632Q6XCG6 107 aa5.77□□□□□ -1.49
TTC28-201ENST00000397906 TENM3Q9P273 2699 aa5.69□□□□□ -1.5
TTC28-201ENST00000397906 ZFHX3Q15911 3703 aa5.68□□□□□ -1.5
TTC28-201ENST00000397906 SVEP1Q4LDE5 3571 aa5.65□□□□□ -1.5
TTC28-201ENST00000397906 SMG1Q96Q15 3661 aaKnown RBP5.65□□□□□ -1.5
TTC28-201ENST00000397906 PKD1L1Q8TDX9 2849 aa5.64□□□□□ -1.51
TTC28-201ENST00000397906 MUC3AQ02505 3323 aa5.64□□□□□ -1.51
TTC28-201ENST00000397906 VWFP04275 2813 aa5.62□□□□□ -1.51
TTC28-201ENST00000397906 CSMD2Q7Z408 3487 aa5.61□□□□□ -1.51
TTC28-201ENST00000397906 SPENQ96T58 3664 aaKnown RBP5.61□□□□□ -1.51
TTC28-201ENST00000397906 MXRA5Q9NR99 2828 aa5.6□□□□□ -1.51
TTC28-201ENST00000397906 TGP01266 2768 aa5.58□□□□□ -1.52
TTC28-201ENST00000397906 CUBNO60494 3623 aa5.56□□□□□ -1.52
TTC28-201ENST00000397906 KRTAP12-2P59991 146 aa5.55□□□□□ -1.52
TTC28-201ENST00000397906 PDZD2O15018 2839 aa5.5□□□□□ -1.53
TTC28-201ENST00000397906 KRTAP13-4Q3LI77 160 aa5.39□□□□□ -1.55
TTC28-201ENST00000397906 OTOGQ6ZRI0 2925 aa5.38□□□□□ -1.55
TTC28-201ENST00000397906 KRTAP12-1P59990 96 aa5.37□□□□□ -1.55
TTC28-201ENST00000397906 FBN1P35555 2871 aaKnown RBP5.37□□□□□ -1.55
TTC28-201ENST00000397906 KRTAP4-5Q9BYR2 181 aa5.34□□□□□ -1.55
TTC28-201ENST00000397906 KRTAP3-1Q9BYR8 98 aa5.34□□□□□ -1.55
TTC28-201ENST00000397906 KRTAP15-1Q3LI76 137 aa5.32□□□□□ -1.56
TTC28-201ENST00000397906 CRCT1Q9UGL9 99 aa5.31□□□□□ -1.56
TTC28-201ENST00000397906 TRRAPQ9Y4A5 3859 aa5.31□□□□□ -1.56
TTC28-201ENST00000397906 BSNQ9UPA5 3926 aa5.3□□□□□ -1.56
TTC28-201ENST00000397906 MT1HL1P0DM35 61 aa5.27□□□□□ -1.57
TTC28-201ENST00000397906 VPS13CQ709C8 3753 aa5.2□□□□□ -1.58
TTC28-201ENST00000397906 ANK3Q12955 4377 aaKnown RBP5.19□□□□□ -1.58
TTC28-201ENST00000397906 SRRM2Q9UQ35 2752 aaKnown RBP5.18□□□□□ -1.58
TTC28-201ENST00000397906 FBN3Q75N90 2809 aa5.15□□□□□ -1.59
TTC28-201ENST00000397906 KRTAP10-6P60371 365 aaPredicted RBP5.14□□□□□ -1.59
TTC28-201ENST00000397906 MEGF8Q7Z7M0 2845 aa5.12□□□□□ -1.59
TTC28-201ENST00000397906 KRTAP10-12P60413 245 aa5.12□□□□□ -1.59
TTC28-201ENST00000397906 COL7A1Q02388 2944 aa5.11□□□□□ -1.59
TTC28-201ENST00000397906 CSMD3Q7Z407 3707 aa5.09□□□□□ -1.59
TTC28-201ENST00000397906 KRTAP10-4P60372 401 aaPredicted RBP5.03□□□□□ -1.6
TTC28-201ENST00000397906 HUWE1Q7Z6Z7 4374 aaKnown RBP5□□□□□ -1.61
TTC28-201ENST00000397906 KRTAP3-3Q9BYR6 98 aa5□□□□□ -1.61
TTC28-201ENST00000397906 ZNF469Q96JG9 3925 aaPredicted RBP4.96□□□□□ -1.62
TTC28-201ENST00000397906 KRTAP3-2Q9BYR7 98 aa4.93□□□□□ -1.62
TTC28-201ENST00000397906 KRTAP12-3P60328 96 aa4.9□□□□□ -1.62
TTC28-201ENST00000397906 LCE3AQ5TA76 89 aa4.9□□□□□ -1.62
TTC28-201ENST00000397906 LORP23490 312 aaPredicted RBP4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 162.2 ms