RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 J3QL48 77 aa7.81□□□□□ -1.16
VAPB-202ENST00000395802 DEFB116Q30KQ4 102 aa7.81□□□□□ -1.16
VAPB-202ENST00000395802 Q96NJ1 140 aa7.81□□□□□ -1.16
VAPB-202ENST00000395802 C1orf195Q5TG92 126 aa7.8□□□□□ -1.16
VAPB-202ENST00000395802 A8MWP4 228 aa7.79□□□□□ -1.16
VAPB-202ENST00000395802 K7EQZ3 153 aa7.79□□□□□ -1.16
VAPB-202ENST00000395802 DMBT1Q9UGM3 2413 aaPredicted RBP7.78□□□□□ -1.16
VAPB-202ENST00000395802 ATOX1O00244 68 aa7.75□□□□□ -1.17
VAPB-202ENST00000395802 PRR15Q8IV56 129 aa7.74□□□□□ -1.17
VAPB-202ENST00000395802 FP248Q71RG6 208 aaPredicted RBP7.73□□□□□ -1.17
VAPB-202ENST00000395802 A0A1B0GVX0 72 aa7.73□□□□□ -1.17
VAPB-202ENST00000395802 CCDC179H3BU77 68 aa7.72□□□□□ -1.17
VAPB-202ENST00000395802 IGHV6-1A0A0B4J1U7 121 aa7.7□□□□□ -1.18
VAPB-202ENST00000395802 C8orf87E5RJ46 101 aa7.7□□□□□ -1.18
VAPB-202ENST00000395802 HCG22E2RYF7 251 aa7.68□□□□□ -1.18
VAPB-202ENST00000395802 RETNLBQ9BQ08 111 aa7.68□□□□□ -1.18
VAPB-202ENST00000395802 LINC00313P59037 77 aa7.66□□□□□ -1.18
VAPB-202ENST00000395802 SERP2Q8N6R1 65 aa7.65□□□□□ -1.18
VAPB-202ENST00000395802 C8orf17Q9NRJ1 99 aa7.65□□□□□ -1.18
VAPB-202ENST00000395802 PCLOQ9Y6V0 5065 aa7.64□□□□□ -1.19
VAPB-202ENST00000395802 MMP24-AS1A0A0U1RRL7 71 aa7.64□□□□□ -1.19
VAPB-202ENST00000395802 SMIM20Q8N5G0 67 aa7.64□□□□□ -1.19
VAPB-202ENST00000395802 IGLV7-46A0A075B6I9 117 aa7.63□□□□□ -1.19
VAPB-202ENST00000395802 hDV103S1A0JD37 113 aa7.63□□□□□ -1.19
VAPB-202ENST00000395802 COX7CP15954 63 aa7.63□□□□□ -1.19
VAPB-202ENST00000395802 CASC2Q6XLA1 102 aa7.63□□□□□ -1.19
VAPB-202ENST00000395802 WFDC13Q8IUB5 93 aa7.63□□□□□ -1.19
VAPB-202ENST00000395802 PRR4Q16378 134 aa7.62□□□□□ -1.19
VAPB-202ENST00000395802 OCR1Q9BZK8 76 aa7.62□□□□□ -1.19
VAPB-202ENST00000395802 TRAV7A0A075B6U4 112 aa7.61□□□□□ -1.19
VAPB-202ENST00000395802 UQCRQO14949 82 aa7.61□□□□□ -1.19
VAPB-202ENST00000395802 TMEM254Q8TBM7 123 aa7.59□□□□□ -1.19
VAPB-202ENST00000395802 NOTCH2NLQ7Z3S9 236 aa7.58□□□□□ -1.2
VAPB-202ENST00000395802 MRPL34Q9BQ48 92 aaKnown RBP7.57□□□□□ -1.2
VAPB-202ENST00000395802 C9orf92A6NGG3 77 aa7.54□□□□□ -1.2
VAPB-202ENST00000395802 TPRXLQ17RH7 258 aa7.54□□□□□ -1.2
VAPB-202ENST00000395802 TP53AIP1Q9HCN2 124 aa7.53□□□□□ -1.2
VAPB-202ENST00000395802 NDUFS5O43920 106 aa7.52□□□□□ -1.2
VAPB-202ENST00000395802 KRTAP13-3Q3SY46 172 aa7.52□□□□□ -1.2
VAPB-202ENST00000395802 KRTAP16-1A8MUX0 517 aa7.51□□□□□ -1.21
VAPB-202ENST00000395802 Q8N9P0 234 aaPredicted RBP7.51□□□□□ -1.21
VAPB-202ENST00000395802 C20orf197Q8N268 126 aa7.5□□□□□ -1.21
VAPB-202ENST00000395802 CYSTM1Q9H1C7 97 aa7.48□□□□□ -1.21
VAPB-202ENST00000395802 KLKP1Q107X0 134 aa7.48□□□□□ -1.21
VAPB-202ENST00000395802 C20orf166-AS1Q96NR2 134 aa7.48□□□□□ -1.21
VAPB-202ENST00000395802 Q75L30 129 aa7.46□□□□□ -1.21
VAPB-202ENST00000395802 A8MUU9 505 aa7.45□□□□□ -1.22
VAPB-202ENST00000395802 C5orf47Q569G3 176 aa7.45□□□□□ -1.22
VAPB-202ENST00000395802 SNURFQ9Y675 71 aa7.44□□□□□ -1.22
VAPB-202ENST00000395802 A0A0U1RQV1 116 aa7.43□□□□□ -1.22
VAPB-202ENST00000395802 XP32Q5T750 250 aa7.43□□□□□ -1.22
VAPB-202ENST00000395802 HERC1Q15751 4861 aa7.42□□□□□ -1.22
VAPB-202ENST00000395802 TRAV22A0A0B4J277 110 aa7.41□□□□□ -1.22
VAPB-202ENST00000395802 ATP11AUNQ6ZP68 121 aa7.41□□□□□ -1.22
VAPB-202ENST00000395802 H0Y9P7 68 aa7.4□□□□□ -1.23
VAPB-202ENST00000395802 MP68P56378 58 aa7.4□□□□□ -1.23
VAPB-202ENST00000395802 TMEM258P61165 79 aa7.4□□□□□ -1.23
VAPB-202ENST00000395802 RPL37P61927 97 aaKnown RBP7.4□□□□□ -1.23
VAPB-202ENST00000395802 ZCCHC13Q8WW36 166 aaKnown RBP7.39□□□□□ -1.23
VAPB-202ENST00000395802 RPS28P62857 69 aaKnown RBP7.38□□□□□ -1.23
VAPB-202ENST00000395802 H7BZZ5 65 aa7.38□□□□□ -1.23
VAPB-202ENST00000395802 H3BPC8 53 aa7.36□□□□□ -1.23
VAPB-202ENST00000395802 Q5W150 140 aa7.36□□□□□ -1.23
VAPB-202ENST00000395802 LINC00208Q96KT6 92 aa7.36□□□□□ -1.23
VAPB-202ENST00000395802 NDUFC1O43677 76 aa7.35□□□□□ -1.23
VAPB-202ENST00000395802 SEC61BP60468 96 aaKnown RBP7.33□□□□□ -1.24
VAPB-202ENST00000395802 C1orf64Q8NEQ6 169 aa7.33□□□□□ -1.24
VAPB-202ENST00000395802 LPAP08519 4548 aa7.33□□□□□ -1.24
VAPB-202ENST00000395802 HMCN2Q8NDA2 5059 aa7.31□□□□□ -1.24
VAPB-202ENST00000395802 LOC101927531A0A1B0GV80 90 aa7.3□□□□□ -1.24
VAPB-202ENST00000395802 LRP2P98164 4655 aa7.27□□□□□ -1.25
VAPB-202ENST00000395802 PCOTHQ58A44 107 aa7.25□□□□□ -1.25
VAPB-202ENST00000395802 C7orf65Q6ZTY9 151 aa7.24□□□□□ -1.25
VAPB-202ENST00000395802 FAM236DA0A1B0GTK5 79 aa7.24□□□□□ -1.25
VAPB-202ENST00000395802 FAM236CP0DP71 79 aa7.24□□□□□ -1.25
VAPB-202ENST00000395802 IGKV2-30P06310 120 aa7.23□□□□□ -1.25
VAPB-202ENST00000395802 IGKV2D-30A0A075B6S6 120 aa7.22□□□□□ -1.25
VAPB-202ENST00000395802 CYP4F30PQ9H0H9 118 aa7.22□□□□□ -1.25
VAPB-202ENST00000395802 SPINK7P58062 85 aa7.2□□□□□ -1.26
VAPB-202ENST00000395802 ATP5EP56381 51 aaPredicted RBP7.2□□□□□ -1.26
VAPB-202ENST00000395802 SPANXA2-OT1Q8N9U9 137 aa7.18□□□□□ -1.26
VAPB-202ENST00000395802 SERP1Q9Y6X1 66 aa7.17□□□□□ -1.26
VAPB-202ENST00000395802 MUC17Q685J3 4493 aa7.14□□□□□ -1.27
VAPB-202ENST00000395802 HRES1P13985 223 aa7.1□□□□□ -1.27
VAPB-202ENST00000395802 RBM12B-AS1Q9P1G2 102 aa7.06□□□□□ -1.28
VAPB-202ENST00000395802 SMIM26A0A096LP01 95 aa7.05□□□□□ -1.28
VAPB-202ENST00000395802 C4orf26Q17RF5 130 aa7.04□□□□□ -1.28
VAPB-202ENST00000395802 A8MUN3 132 aa7.01□□□□□ -1.29
VAPB-202ENST00000395802 UBR4Q5T4S7 5183 aa7.01□□□□□ -1.29
VAPB-202ENST00000395802 DMAC1Q96GE9 116 aa7.01□□□□□ -1.29
VAPB-202ENST00000395802 COX6B2Q6YFQ2 88 aa7□□□□□ -1.29
VAPB-202ENST00000395802 MPLKIPQ8TAP9 179 aa6.98□□□□□ -1.29
VAPB-202ENST00000395802 KRTAP4-1Q9BYQ7 146 aa6.98□□□□□ -1.29
VAPB-202ENST00000395802 MUC2Q02817 5179 aa6.97□□□□□ -1.29
VAPB-202ENST00000395802 COA5Q86WW8 74 aa6.96□□□□□ -1.3
VAPB-202ENST00000395802 ACYP2P14621 99 aa6.95□□□□□ -1.3
VAPB-202ENST00000395802 RNF213Q63HN8 5207 aa6.9□□□□□ -1.3
VAPB-202ENST00000395802 H1FX-AS1Q4G0G2 97 aa6.9□□□□□ -1.31
VAPB-202ENST00000395802 KRTAP3-1Q9BYR8 98 aa6.9□□□□□ -1.31
VAPB-202ENST00000395802 CHKB-CPT1BH3BT56 60 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms