RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 hDV103S1A0JD37 113 aa8.79□□□□□ -1
GPC3-202ENST00000394299 SSBP3-AS1Q7Z2R9 100 aa8.79□□□□□ -1
GPC3-202ENST00000394299 BRK1Q8WUW1 75 aa8.79□□□□□ -1
GPC3-202ENST00000394299 APOBP04114 4563 aaKnown RBP8.77□□□□□ -1
GPC3-202ENST00000394299 C8orf17Q9NRJ1 99 aa8.77□□□□□ -1.01
GPC3-202ENST00000394299 A0A1B0GVX0 72 aa8.76□□□□□ -1.01
GPC3-202ENST00000394299 ATP5EP56381 51 aaPredicted RBP8.76□□□□□ -1.01
GPC3-202ENST00000394299 MPLKIPQ8TAP9 179 aa8.76□□□□□ -1.01
GPC3-202ENST00000394299 ZCCHC13Q8WW36 166 aaKnown RBP8.76□□□□□ -1.01
GPC3-202ENST00000394299 A0A1B0GVY2 172 aa8.75□□□□□ -1.01
GPC3-202ENST00000394299 CDK2AP2O75956 126 aa8.75□□□□□ -1.01
GPC3-202ENST00000394299 LINC00208Q96KT6 92 aa8.73□□□□□ -1.01
GPC3-202ENST00000394299 PLA2G1BP04054 148 aaKnown RBP8.73□□□□□ -1.01
GPC3-202ENST00000394299 CD164Q04900 197 aa8.72□□□□□ -1.01
GPC3-202ENST00000394299 ASB16-AS1Q495Z4 193 aa8.72□□□□□ -1.01
GPC3-202ENST00000394299 H0Y9P7 68 aa8.71□□□□□ -1.01
GPC3-202ENST00000394299 MP68P56378 58 aa8.7□□□□□ -1.02
GPC3-202ENST00000394299 NDUFS5O43920 106 aa8.69□□□□□ -1.02
GPC3-202ENST00000394299 C1orf195Q5TG92 126 aa8.69□□□□□ -1.02
GPC3-202ENST00000394299 PRR4Q16378 134 aa8.68□□□□□ -1.02
GPC3-202ENST00000394299 RYR3Q15413 4870 aa8.67□□□□□ -1.02
GPC3-202ENST00000394299 MRPL34Q9BQ48 92 aaKnown RBP8.65□□□□□ -1.02
GPC3-202ENST00000394299 PRR26Q8N8Z3 221 aa8.65□□□□□ -1.02
GPC3-202ENST00000394299 TYMSOSQ8TAI1 123 aa8.65□□□□□ -1.02
GPC3-202ENST00000394299 C1orf64Q8NEQ6 169 aa8.64□□□□□ -1.03
GPC3-202ENST00000394299 TRAV22A0A0B4J277 110 aa8.64□□□□□ -1.03
GPC3-202ENST00000394299 V9GYY9 64 aa8.63□□□□□ -1.03
GPC3-202ENST00000394299 SEC61GP60059 68 aa8.61□□□□□ -1.03
GPC3-202ENST00000394299 KRTAP10-4P60372 401 aaPredicted RBP8.6□□□□□ -1.03
GPC3-202ENST00000394299 TP53AIP1Q9HCN2 124 aa8.58□□□□□ -1.04
GPC3-202ENST00000394299 C4orf48Q5BLP8 95 aa8.58□□□□□ -1.04
GPC3-202ENST00000394299 Q5W150 140 aa8.58□□□□□ -1.04
GPC3-202ENST00000394299 PCOTHQ58A44 107 aa8.57□□□□□ -1.04
GPC3-202ENST00000394299 H3BPC8 53 aa8.56□□□□□ -1.04
GPC3-202ENST00000394299 LINC00313P59037 77 aa8.56□□□□□ -1.04
GPC3-202ENST00000394299 RETNLBQ9BQ08 111 aa8.54□□□□□ -1.04
GPC3-202ENST00000394299 LIMD2Q9BT23 127 aa8.53□□□□□ -1.04
GPC3-202ENST00000394299 Q1T7F1 81 aa8.52□□□□□ -1.05
GPC3-202ENST00000394299 C8orf87E5RJ46 101 aa8.51□□□□□ -1.05
GPC3-202ENST00000394299 SPINK1P00995 79 aa8.51□□□□□ -1.05
GPC3-202ENST00000394299 LINC00304Q8N9R0 145 aa8.51□□□□□ -1.05
GPC3-202ENST00000394299 PKHD1L1Q86WI1 4243 aa8.51□□□□□ -1.05
GPC3-202ENST00000394299 HSPG2P98160 4391 aa8.49□□□□□ -1.05
GPC3-202ENST00000394299 PSPHP1O15172 72 aa8.49□□□□□ -1.05
GPC3-202ENST00000394299 KRTAP13-3Q3SY46 172 aa8.48□□□□□ -1.05
GPC3-202ENST00000394299 CYP4F30PQ9H0H9 118 aa8.48□□□□□ -1.05
GPC3-202ENST00000394299 LRP1Q07954 4544 aaKnown RBP8.48□□□□□ -1.05
GPC3-202ENST00000394299 KRTAP16-1A8MUX0 517 aa8.48□□□□□ -1.05
GPC3-202ENST00000394299 PMAIP1Q13794 54 aa8.47□□□□□ -1.05
GPC3-202ENST00000394299 Q8N9P0 234 aaPredicted RBP8.46□□□□□ -1.06
GPC3-202ENST00000394299 SPANXA2-OT1Q8N9U9 137 aa8.44□□□□□ -1.06
GPC3-202ENST00000394299 RYR1P21817 5038 aa8.43□□□□□ -1.06
GPC3-202ENST00000394299 IGLV7-46A0A075B6I9 117 aa8.42□□□□□ -1.06
GPC3-202ENST00000394299 A8MU10 97 aa8.41□□□□□ -1.06
GPC3-202ENST00000394299 KRTAP17-1Q9BYP8 105 aa8.41□□□□□ -1.06
GPC3-202ENST00000394299 KIAA1109Q2LD37 5005 aa8.4□□□□□ -1.06
GPC3-202ENST00000394299 SPAG11AQ6PDA7 123 aa8.4□□□□□ -1.07
GPC3-202ENST00000394299 A8MUN3 132 aa8.39□□□□□ -1.07
GPC3-202ENST00000394299 LOC101927531A0A1B0GV80 90 aa8.37□□□□□ -1.07
GPC3-202ENST00000394299 EPPK1P58107 5090 aaKnown RBP8.36□□□□□ -1.07
GPC3-202ENST00000394299 TNXBP22105 4242 aa8.36□□□□□ -1.07
GPC3-202ENST00000394299 FAM229AH3BQW9 127 aa8.36□□□□□ -1.07
GPC3-202ENST00000394299 RPS29P62273 56 aaKnown RBP8.36□□□□□ -1.07
GPC3-202ENST00000394299 C9orf92A6NGG3 77 aa8.35□□□□□ -1.07
GPC3-202ENST00000394299 Q5VSD8 79 aa8.35□□□□□ -1.07
GPC3-202ENST00000394299 Q5VV11 94 aa8.34□□□□□ -1.07
GPC3-202ENST00000394299 COA5Q86WW8 74 aa8.32□□□□□ -1.08
GPC3-202ENST00000394299 Q8N1X5 172 aa8.32□□□□□ -1.08
GPC3-202ENST00000394299 FLG2Q5D862 2391 aaPredicted RBP8.31□□□□□ -1.08
GPC3-202ENST00000394299 FAT3Q8TDW7 4589 aa8.3□□□□□ -1.08
GPC3-202ENST00000394299 HRES1P13985 223 aa8.3□□□□□ -1.08
GPC3-202ENST00000394299 IGKV2-30P06310 120 aa8.29□□□□□ -1.08
GPC3-202ENST00000394299 IGKV2D-30A0A075B6S6 120 aa8.29□□□□□ -1.08
GPC3-202ENST00000394299 MYCBP2O75592 4640 aa8.28□□□□□ -1.08
GPC3-202ENST00000394299 CHKB-CPT1BH3BT56 60 aa8.25□□□□□ -1.09
GPC3-202ENST00000394299 DMBT1Q9UGM3 2413 aaPredicted RBP8.24□□□□□ -1.09
GPC3-202ENST00000394299 KRTAP10-8P60410 259 aa8.24□□□□□ -1.09
GPC3-202ENST00000394299 PRR15LQ9BU68 103 aa8.21□□□□□ -1.1
GPC3-202ENST00000394299 LCA10Q71F78 164 aa8.2□□□□□ -1.1
GPC3-202ENST00000394299 SPTSSBQ8NFR3 76 aa8.18□□□□□ -1.1
GPC3-202ENST00000394299 KTN1-AS1Q86SY8 53 aa8.17□□□□□ -1.1
GPC3-202ENST00000394299 A8MUU9 505 aa8.16□□□□□ -1.1
GPC3-202ENST00000394299 C20orf166-AS1Q96NR2 134 aa8.16□□□□□ -1.1
GPC3-202ENST00000394299 DMAC1Q96GE9 116 aa8.15□□□□□ -1.1
GPC3-202ENST00000394299 ACYP2P14621 99 aa8.14□□□□□ -1.11
GPC3-202ENST00000394299 Q75L30 129 aa8.13□□□□□ -1.11
GPC3-202ENST00000394299 RBM12B-AS1Q9P1G2 102 aa8.13□□□□□ -1.11
GPC3-202ENST00000394299 ATP11AUNQ6ZP68 121 aa8.13□□□□□ -1.11
GPC3-202ENST00000394299 A6NED7 52 aa8.11□□□□□ -1.11
GPC3-202ENST00000394299 A6NN06 94 aa8.1□□□□□ -1.11
GPC3-202ENST00000394299 C7orf65Q6ZTY9 151 aa8.1□□□□□ -1.11
GPC3-202ENST00000394299 MT1HL1P0DM35 61 aa8.09□□□□□ -1.11
GPC3-202ENST00000394299 KRTAP4-5Q9BYR2 181 aa8.05□□□□□ -1.12
GPC3-202ENST00000394299 CDC42SE1Q9NRR8 79 aa8.05□□□□□ -1.12
GPC3-202ENST00000394299 SPINK7P58062 85 aa8.03□□□□□ -1.12
GPC3-202ENST00000394299 LINC01558Q9Y6Z2 57 aa8.03□□□□□ -1.12
GPC3-202ENST00000394299 ABCA13Q86UQ4 5058 aa8.01□□□□□ -1.13
GPC3-202ENST00000394299 KRTAP3-1Q9BYR8 98 aa7.97□□□□□ -1.13
GPC3-202ENST00000394299 XP32Q5T750 250 aa7.96□□□□□ -1.14
GPC3-202ENST00000394299 LPAP08519 4548 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms