RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 C1orf195Q5TG92 126 aa4.96□□□□□ -1.62
TDP1-203ENST00000393454 Q8N1X5 172 aa4.96□□□□□ -1.62
TDP1-203ENST00000393454 KRTAP17-1Q9BYP8 105 aa4.96□□□□□ -1.62
TDP1-203ENST00000393454 CCDC179H3BU77 68 aa4.95□□□□□ -1.62
TDP1-203ENST00000393454 CASC2Q6XLA1 102 aa4.95□□□□□ -1.62
TDP1-203ENST00000393454 SMIM20Q8N5G0 67 aa4.95□□□□□ -1.62
TDP1-203ENST00000393454 KIAA1109Q2LD37 5005 aa4.95□□□□□ -1.62
TDP1-203ENST00000393454 COX7CP15954 63 aa4.95□□□□□ -1.62
TDP1-203ENST00000393454 TRAV7A0A075B6U4 112 aa4.94□□□□□ -1.62
TDP1-203ENST00000393454 UQCRQO14949 82 aa4.93□□□□□ -1.62
TDP1-203ENST00000393454 C8orf17Q9NRJ1 99 aa4.93□□□□□ -1.62
TDP1-203ENST00000393454 MMP24-AS1A0A0U1RRL7 71 aa4.93□□□□□ -1.62
TDP1-203ENST00000393454 hDV103S1A0JD37 113 aa4.93□□□□□ -1.62
TDP1-203ENST00000393454 KRTAP29-1A8MX34 341 aaPredicted RBP4.92□□□□□ -1.62
TDP1-203ENST00000393454 RPS29P62273 56 aaKnown RBP4.92□□□□□ -1.62
TDP1-203ENST00000393454 LCE2BO14633 110 aa4.92□□□□□ -1.62
TDP1-203ENST00000393454 SVIPQ8NHG7 77 aa4.92□□□□□ -1.62
TDP1-203ENST00000393454 NOTCH2NLQ7Z3S9 236 aa4.91□□□□□ -1.62
TDP1-203ENST00000393454 OCR1Q9BZK8 76 aa4.91□□□□□ -1.62
TDP1-203ENST00000393454 FLG2Q5D862 2391 aaPredicted RBP4.9□□□□□ -1.63
TDP1-203ENST00000393454 LRP1Q07954 4544 aaKnown RBP4.9□□□□□ -1.63
TDP1-203ENST00000393454 KRTAP10-8P60410 259 aa4.89□□□□□ -1.63
TDP1-203ENST00000393454 C8orf87E5RJ46 101 aa4.88□□□□□ -1.63
TDP1-203ENST00000393454 NDUFS5O43920 106 aa4.88□□□□□ -1.63
TDP1-203ENST00000393454 LINC00313P59037 77 aa4.88□□□□□ -1.63
TDP1-203ENST00000393454 C20orf197Q8N268 126 aa4.88□□□□□ -1.63
TDP1-203ENST00000393454 TMEM254Q8TBM7 123 aa4.87□□□□□ -1.63
TDP1-203ENST00000393454 MRPL34Q9BQ48 92 aaKnown RBP4.87□□□□□ -1.63
TDP1-203ENST00000393454 RETNLBQ9BQ08 111 aa4.87□□□□□ -1.63
TDP1-203ENST00000393454 FAT3Q8TDW7 4589 aa4.86□□□□□ -1.63
TDP1-203ENST00000393454 SNURFQ9Y675 71 aa4.85□□□□□ -1.63
TDP1-203ENST00000393454 KRTAP4-5Q9BYR2 181 aa4.85□□□□□ -1.63
TDP1-203ENST00000393454 TNXBP22105 4242 aa4.84□□□□□ -1.63
TDP1-203ENST00000393454 HERC2O95714 4834 aa4.84□□□□□ -1.64
TDP1-203ENST00000393454 C5orf47Q569G3 176 aa4.84□□□□□ -1.64
TDP1-203ENST00000393454 TP53AIP1Q9HCN2 124 aa4.83□□□□□ -1.64
TDP1-203ENST00000393454 MP68P56378 58 aa4.82□□□□□ -1.64
TDP1-203ENST00000393454 CYSTM1Q9H1C7 97 aa4.82□□□□□ -1.64
TDP1-203ENST00000393454 H0Y9P7 68 aa4.82□□□□□ -1.64
TDP1-203ENST00000393454 DMBT1Q9UGM3 2413 aaPredicted RBP4.82□□□□□ -1.64
TDP1-203ENST00000393454 MYCBP2O75592 4640 aa4.82□□□□□ -1.64
TDP1-203ENST00000393454 OXTP01178 125 aa4.81□□□□□ -1.64
TDP1-203ENST00000393454 MT1HL1P0DM35 61 aa4.81□□□□□ -1.64
TDP1-203ENST00000393454 KLKP1Q107X0 134 aa4.81□□□□□ -1.64
TDP1-203ENST00000393454 A0A0U1RQV1 116 aa4.81□□□□□ -1.64
TDP1-203ENST00000393454 C9orf92A6NGG3 77 aa4.81□□□□□ -1.64
TDP1-203ENST00000393454 LCE2CQ5TA81 110 aa4.81□□□□□ -1.64
TDP1-203ENST00000393454 PCLOQ9Y6V0 5065 aa4.8□□□□□ -1.64
TDP1-203ENST00000393454 TRAV22A0A0B4J277 110 aa4.8□□□□□ -1.64
TDP1-203ENST00000393454 KRTAP16-1A8MUX0 517 aa4.8□□□□□ -1.64
TDP1-203ENST00000393454 LINC00208Q96KT6 92 aa4.8□□□□□ -1.64
TDP1-203ENST00000393454 Q8N9P0 234 aaPredicted RBP4.78□□□□□ -1.64
TDP1-203ENST00000393454 C1orf64Q8NEQ6 169 aa4.77□□□□□ -1.65
TDP1-203ENST00000393454 H3BPC8 53 aa4.76□□□□□ -1.65
TDP1-203ENST00000393454 NDUFC1O43677 76 aa4.76□□□□□ -1.65
TDP1-203ENST00000393454 Q5W150 140 aa4.76□□□□□ -1.65
TDP1-203ENST00000393454 H7BZZ5 65 aa4.76□□□□□ -1.65
TDP1-203ENST00000393454 FP248Q71RG6 208 aaPredicted RBP4.76□□□□□ -1.65
TDP1-203ENST00000393454 ZCCHC13Q8WW36 166 aaKnown RBP4.75□□□□□ -1.65
TDP1-203ENST00000393454 IGLV7-46A0A075B6I9 117 aa4.74□□□□□ -1.65
TDP1-203ENST00000393454 TMEM258P61165 79 aa4.74□□□□□ -1.65
TDP1-203ENST00000393454 H3BS24 57 aa4.74□□□□□ -1.65
TDP1-203ENST00000393454 PRR4Q16378 134 aa4.73□□□□□ -1.65
TDP1-203ENST00000393454 ABCA13Q86UQ4 5058 aa4.72□□□□□ -1.65
TDP1-203ENST00000393454 KRTAP13-3Q3SY46 172 aa4.71□□□□□ -1.65
TDP1-203ENST00000393454 FAM236DA0A1B0GTK5 79 aa4.71□□□□□ -1.66
TDP1-203ENST00000393454 LOC101927531A0A1B0GV80 90 aa4.71□□□□□ -1.66
TDP1-203ENST00000393454 FAM236CP0DP71 79 aa4.71□□□□□ -1.66
TDP1-203ENST00000393454 PCOTHQ58A44 107 aa4.71□□□□□ -1.66
TDP1-203ENST00000393454 LCE2AQ5TA79 106 aaPredicted RBP4.71□□□□□ -1.66
TDP1-203ENST00000393454 A8MUU9 505 aa4.7□□□□□ -1.66
TDP1-203ENST00000393454 C20orf166-AS1Q96NR2 134 aa4.7□□□□□ -1.66
TDP1-203ENST00000393454 IGKV2D-30A0A075B6S6 120 aa4.68□□□□□ -1.66
TDP1-203ENST00000393454 IGKV2-30P06310 120 aa4.68□□□□□ -1.66
TDP1-203ENST00000393454 CYP4F30PQ9H0H9 118 aa4.68□□□□□ -1.66
TDP1-203ENST00000393454 Q75L30 129 aa4.66□□□□□ -1.66
TDP1-203ENST00000393454 ATP5EP56381 51 aaPredicted RBP4.66□□□□□ -1.66
TDP1-203ENST00000393454 XP32Q5T750 250 aa4.65□□□□□ -1.67
TDP1-203ENST00000393454 KRTAP4-8Q9BYQ9 185 aa4.65□□□□□ -1.67
TDP1-203ENST00000393454 ATP11AUNQ6ZP68 121 aa4.64□□□□□ -1.67
TDP1-203ENST00000393454 SPANXA2-OT1Q8N9U9 137 aa4.63□□□□□ -1.67
TDP1-203ENST00000393454 RPL37P61927 97 aaKnown RBP4.62□□□□□ -1.67
TDP1-203ENST00000393454 C7orf65Q6ZTY9 151 aa4.62□□□□□ -1.67
TDP1-203ENST00000393454 TPRXLQ17RH7 258 aa4.61□□□□□ -1.67
TDP1-203ENST00000393454 HRES1P13985 223 aa4.61□□□□□ -1.67
TDP1-203ENST00000393454 SERP1Q9Y6X1 66 aa4.6□□□□□ -1.67
TDP1-203ENST00000393454 SPINK7P58062 85 aa4.58□□□□□ -1.68
TDP1-203ENST00000393454 RPS28P62857 69 aaKnown RBP4.58□□□□□ -1.68
TDP1-203ENST00000393454 LPAP08519 4548 aa4.56□□□□□ -1.68
TDP1-203ENST00000393454 C4orf26Q17RF5 130 aa4.54□□□□□ -1.68
TDP1-203ENST00000393454 LORP23490 312 aaPredicted RBP4.53□□□□□ -1.68
TDP1-203ENST00000393454 ACYP2P14621 99 aa4.53□□□□□ -1.68
TDP1-203ENST00000393454 LRP2P98164 4655 aa4.53□□□□□ -1.68
TDP1-203ENST00000393454 COA5Q86WW8 74 aa4.52□□□□□ -1.69
TDP1-203ENST00000393454 DMAC1Q96GE9 116 aa4.52□□□□□ -1.69
TDP1-203ENST00000393454 HERC1Q15751 4861 aa4.52□□□□□ -1.69
TDP1-203ENST00000393454 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.5□□□□□ -1.69
TDP1-203ENST00000393454 KRTAP9-2Q9BYQ4 174 aa4.5□□□□□ -1.69
TDP1-203ENST00000393454 SMIM26A0A096LP01 95 aa4.49□□□□□ -1.69
TDP1-203ENST00000393454 SEC61BP60468 96 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms