RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 NISCHQ9Y2I1 1504 aa19.45■□□□□ 0.7
TDP1-203ENST00000393454 CCDC180Q9P1Z9 1646 aa16.94■□□□□ 0.3
TDP1-203ENST00000393454 ZCCHC6Q5VYS8 1495 aaKnown RBP16.32■□□□□ 0.2
TDP1-203ENST00000393454 DCAF8L2P0C7V8 631 aa16.22■□□□□ 0.19
TDP1-203ENST00000393454 ABCC9O60706 1549 aa16.1■□□□□ 0.17
TDP1-203ENST00000393454 DCAF1Q9Y4B6 1507 aa16.03■□□□□ 0.16
TDP1-203ENST00000393454 SHROOM4Q9ULL8 1493 aa15.98■□□□□ 0.15
TDP1-203ENST00000393454 MYO15BQ96JP2 1530 aa15.83■□□□□ 0.12
TDP1-203ENST00000393454 NACADO15069 1562 aa15.79■□□□□ 0.12
TDP1-203ENST00000393454 RB1CC1Q8TDY2 1594 aa15.67■□□□□ 0.1
TDP1-203ENST00000393454 SCRIBQ14160 1630 aa15.64■□□□□ 0.09
TDP1-203ENST00000393454 SUPT5HO00267 1087 aaKnown RBP15.39■□□□□ 0.05
TDP1-203ENST00000393454 UNC13AQ9UPW8 1703 aa15.36■□□□□ 0.05
TDP1-203ENST00000393454 PABPN1Q86U42 306 aaKnown RBP eCLIP15.21■□□□□ 0.03
TDP1-203ENST00000393454 BICRAQ9NZM4 1560 aa15.18■□□□□ 0.02
TDP1-203ENST00000393454 CECR2Q9BXF3 1484 aa15.14■□□□□ 0.01
TDP1-203ENST00000393454 RSF1Q96T23 1441 aaPredicted RBP15.1■□□□□ 0.01
TDP1-203ENST00000393454 MROH2BQ7Z745 1585 aa15.04■□□□□ -0
TDP1-203ENST00000393454 BAZ1AQ9NRL2 1556 aaPredicted RBP15.02■□□□□ -0
TDP1-203ENST00000393454 SMARCA4P51532 1647 aa14.96□□□□□ -0.01
TDP1-203ENST00000393454 WIZO95785 1651 aa14.94□□□□□ -0.02
TDP1-203ENST00000393454 TOP2AP11388 1531 aaKnown RBP14.75□□□□□ -0.05
TDP1-203ENST00000393454 EIF4G1Q04637 1599 aaKnown RBP14.74□□□□□ -0.05
TDP1-203ENST00000393454 PEG3Q9GZU2 1588 aa14.73□□□□□ -0.05
TDP1-203ENST00000393454 ATAD2BQ9ULI0 1458 aa14.71□□□□□ -0.05
TDP1-203ENST00000393454 SMARCA2P51531 1590 aa14.7□□□□□ -0.06
TDP1-203ENST00000393454 CHIC1Q5VXU3 224 aa14.67□□□□□ -0.06
TDP1-203ENST00000393454 BAZ1BQ9UIG0 1483 aaKnown RBP14.65□□□□□ -0.06
TDP1-203ENST00000393454 CCDC88BA6NC98 1476 aa14.63□□□□□ -0.07
TDP1-203ENST00000393454 NCAPD3P42695 1498 aa14.56□□□□□ -0.08
TDP1-203ENST00000393454 CC2D2AQ9P2K1 1620 aa14.54□□□□□ -0.08
TDP1-203ENST00000393454 HMGXB3Q12766 1538 aa14.54□□□□□ -0.08
TDP1-203ENST00000393454 TRIM41Q8WV44 630 aa14.45□□□□□ -0.1
TDP1-203ENST00000393454 ABCC8Q09428 1581 aa14.34□□□□□ -0.11
TDP1-203ENST00000393454 CFTRP13569 1480 aa14.25□□□□□ -0.13
TDP1-203ENST00000393454 WRNQ14191 1432 aaPredicted RBP eCLIP14.23□□□□□ -0.13
TDP1-203ENST00000393454 FAM9AQ8IZU1 332 aaPredicted RBP14.22□□□□□ -0.13
TDP1-203ENST00000393454 CADPSQ9ULU8 1353 aa14.22□□□□□ -0.13
TDP1-203ENST00000393454 DNAJC5BQ9UF47 199 aa14.19□□□□□ -0.14
TDP1-203ENST00000393454 PRDM2Q13029 1718 aa14.18□□□□□ -0.14
TDP1-203ENST00000393454 SYNJ1O43426 1573 aa14.16□□□□□ -0.14
TDP1-203ENST00000393454 LOC105371045A0A1W2PR82 267 aa14.16□□□□□ -0.14
TDP1-203ENST00000393454 NESP48681 1621 aa14.12□□□□□ -0.15
TDP1-203ENST00000393454 TOP2BQ02880 1626 aa14.09□□□□□ -0.15
TDP1-203ENST00000393454 LAMC3Q9Y6N6 1575 aa14.08□□□□□ -0.16
TDP1-203ENST00000393454 FANCD2Q9BXW9 1451 aa14.08□□□□□ -0.16
TDP1-203ENST00000393454 EHMT2Q96KQ7 1210 aa14.07□□□□□ -0.16
TDP1-203ENST00000393454 SOGA1O94964 1423 aa14.07□□□□□ -0.16
TDP1-203ENST00000393454 BIVM-ERCC5R4GMW8 1640 aa14.07□□□□□ -0.16
TDP1-203ENST00000393454 CUX1P39880 1505 aa14.06□□□□□ -0.16
TDP1-203ENST00000393454 RUSC2Q8N2Y8 1516 aa14.01□□□□□ -0.17
TDP1-203ENST00000393454 EEA1Q15075 1411 aa14□□□□□ -0.17
TDP1-203ENST00000393454 PDS5BQ9NTI5 1447 aa14□□□□□ -0.17
TDP1-203ENST00000393454 CEP164Q9UPV0 1460 aa13.99□□□□□ -0.17
TDP1-203ENST00000393454 CSRNP3Q8WYN3 585 aa13.98□□□□□ -0.17
TDP1-203ENST00000393454 KIF21AQ7Z4S6 1674 aa13.94□□□□□ -0.18
TDP1-203ENST00000393454 DNMBPQ6XZF7 1577 aa13.93□□□□□ -0.18
TDP1-203ENST00000393454 FGD5Q6ZNL6 1462 aa13.92□□□□□ -0.18
TDP1-203ENST00000393454 TOPBP1Q92547 1522 aa13.92□□□□□ -0.18
TDP1-203ENST00000393454 URB2Q14146 1524 aaKnown RBP13.89□□□□□ -0.19
TDP1-203ENST00000393454 KIF27Q86VH2 1401 aa13.88□□□□□ -0.19
TDP1-203ENST00000393454 UBTFP17480 764 aaKnown RBP13.86□□□□□ -0.19
TDP1-203ENST00000393454 CUX2O14529 1486 aa13.85□□□□□ -0.19
TDP1-203ENST00000393454 POLA1P09884 1462 aaPredicted RBP13.85□□□□□ -0.19
TDP1-203ENST00000393454 GOLGA3Q08378 1498 aa13.84□□□□□ -0.19
TDP1-203ENST00000393454 RAD54L2Q9Y4B4 1467 aa13.83□□□□□ -0.2
TDP1-203ENST00000393454 KIF21BO75037 1637 aa13.82□□□□□ -0.2
TDP1-203ENST00000393454 ERCC6Q03468 1493 aa13.82□□□□□ -0.2
TDP1-203ENST00000393454 MRC2Q9UBG0 1479 aa13.81□□□□□ -0.2
TDP1-203ENST00000393454 TNIKQ9UKE5 1360 aa13.79□□□□□ -0.2
TDP1-203ENST00000393454 ABCA10Q8WWZ4 1543 aa13.77□□□□□ -0.2
TDP1-203ENST00000393454 RAPGEF2Q9Y4G8 1499 aa13.77□□□□□ -0.2
TDP1-203ENST00000393454 PRXQ9BXM0 1461 aa13.75□□□□□ -0.21
TDP1-203ENST00000393454 IGF1RP08069 1367 aa13.74□□□□□ -0.21
TDP1-203ENST00000393454 CEP162Q5TB80 1403 aa13.73□□□□□ -0.21
TDP1-203ENST00000393454 ERICH3Q5RHP9 1530 aa13.72□□□□□ -0.21
TDP1-203ENST00000393454 WDR62O43379 1518 aa13.72□□□□□ -0.21
TDP1-203ENST00000393454 WDR97A6NE52 1622 aa13.72□□□□□ -0.21
TDP1-203ENST00000393454 TDRD9Q8NDG6 1382 aaKnown RBP13.71□□□□□ -0.21
TDP1-203ENST00000393454 CARMIL1Q5VZK9 1371 aa13.69□□□□□ -0.22
TDP1-203ENST00000393454 TARBP1Q13395 1621 aaKnown RBP13.69□□□□□ -0.22
TDP1-203ENST00000393454 RANGAP1P46060 587 aaPredicted RBP13.68□□□□□ -0.22
TDP1-203ENST00000393454 THOC2Q8NI27 1593 aaKnown RBP13.67□□□□□ -0.22
TDP1-203ENST00000393454 GAPVD1Q14C86 1478 aa13.67□□□□□ -0.22
TDP1-203ENST00000393454 ABCA5Q8WWZ7 1642 aa13.66□□□□□ -0.22
TDP1-203ENST00000393454 IFT140Q96RY7 1462 aa13.64□□□□□ -0.23
TDP1-203ENST00000393454 CLIP1P30622 1438 aa13.63□□□□□ -0.23
TDP1-203ENST00000393454 CUL7Q14999 1698 aa13.62□□□□□ -0.23
TDP1-203ENST00000393454 AQRO60306 1485 aaKnown RBP eCLIP13.61□□□□□ -0.232e-7■■■■□ 20.2
TDP1-203ENST00000393454 ZNF608Q9ULD9 1512 aaPredicted RBP13.58□□□□□ -0.24
TDP1-203ENST00000393454 PBRM1Q86U86 1689 aa13.58□□□□□ -0.24
TDP1-203ENST00000393454 GRIN2BQ13224 1484 aa13.55□□□□□ -0.24
TDP1-203ENST00000393454 PPARGC1BQ86YN6 1023 aaKnown RBP13.54□□□□□ -0.24
TDP1-203ENST00000393454 EIF4G3O43432 1585 aaKnown RBP13.52□□□□□ -0.24
TDP1-203ENST00000393454 PCGF6Q9BYE7 350 aa13.52□□□□□ -0.24
TDP1-203ENST00000393454 FHAD1B1AJZ9 1412 aa13.5□□□□□ -0.25
TDP1-203ENST00000393454 CTTNBP2Q8WZ74 1663 aa13.49□□□□□ -0.25
TDP1-203ENST00000393454 TRIM26Q12899 539 aaPredicted RBP13.49□□□□□ -0.25
TDP1-203ENST00000393454 VPS8Q8N3P4 1428 aa13.49□□□□□ -0.25
TDP1-203ENST00000393454 ADAMTS12P58397 1594 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms