RNA–Protein interactions for RNA: ENST00000372396.3

KDM4A-201, Transcript of lysine demethylase 4A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KDM4A, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM4A-201ENST00000372396 KRTAP29-1A8MX34 341 aaPredicted RBP6.13□□□□□ -1.43
KDM4A-201ENST00000372396 Q6ZRN7 208 aaPredicted RBP6.13□□□□□ -1.43
KDM4A-201ENST00000372396 NBEAL1Q6ZS30 2694 aa6.13□□□□□ -1.43
KDM4A-201ENST00000372396 SPATA8Q6RVD6 105 aa6.13□□□□□ -1.43
KDM4A-201ENST00000372396 SVEP1Q4LDE5 3571 aa6.12□□□□□ -1.43
KDM4A-201ENST00000372396 ANK3Q12955 4377 aaKnown RBP6.12□□□□□ -1.43
KDM4A-201ENST00000372396 ANAPC11Q9NYG5 84 aa6.1□□□□□ -1.43
KDM4A-201ENST00000372396 A0A1B0GVX0 72 aa6.08□□□□□ -1.44
KDM4A-201ENST00000372396 C8orf17Q9NRJ1 99 aa6.07□□□□□ -1.44
KDM4A-201ENST00000372396 MRPL34Q9BQ48 92 aaKnown RBP6.07□□□□□ -1.44
KDM4A-201ENST00000372396 MMP24-AS1A0A0U1RRL7 71 aa6.05□□□□□ -1.44
KDM4A-201ENST00000372396 KRTAP7-1Q8IUC3 87 aa6.05□□□□□ -1.44
KDM4A-201ENST00000372396 PANO1I0J062 215 aa6.05□□□□□ -1.44
KDM4A-201ENST00000372396 KRTAP16-1A8MUX0 517 aa6.05□□□□□ -1.44
KDM4A-201ENST00000372396 LINC00304Q8N9R0 145 aa6.05□□□□□ -1.44
KDM4A-201ENST00000372396 KRTAP25-1Q3LHN0 102 aa6.04□□□□□ -1.44
KDM4A-201ENST00000372396 SMR3BP02814 79 aaPredicted RBP6.03□□□□□ -1.44
KDM4A-201ENST00000372396 TENM1Q9UKZ4 2725 aa6.03□□□□□ -1.44
KDM4A-201ENST00000372396 STAB2Q8WWQ8 2551 aa6.03□□□□□ -1.44
KDM4A-201ENST00000372396 KRTAP10-2P60368 255 aa6.03□□□□□ -1.44
KDM4A-201ENST00000372396 LINC00483Q53H64 154 aa6.02□□□□□ -1.45
KDM4A-201ENST00000372396 KRTAP10-1P60331 282 aa6.01□□□□□ -1.45
KDM4A-201ENST00000372396 SPINK1P00995 79 aa6.01□□□□□ -1.45
KDM4A-201ENST00000372396 LINC00472Q9H8W2 130 aa5.98□□□□□ -1.45
KDM4A-201ENST00000372396 KRTAP11-1Q8IUC1 163 aa5.97□□□□□ -1.45
KDM4A-201ENST00000372396 Q96NJ1 140 aa5.96□□□□□ -1.45
KDM4A-201ENST00000372396 IGKV2D-30A0A075B6S6 120 aa5.96□□□□□ -1.46
KDM4A-201ENST00000372396 IGKV2-30P06310 120 aa5.96□□□□□ -1.46
KDM4A-201ENST00000372396 DMAC1Q96GE9 116 aa5.96□□□□□ -1.46
KDM4A-201ENST00000372396 TENM3Q9P273 2699 aa5.95□□□□□ -1.46
KDM4A-201ENST00000372396 KRTAP13-1Q8IUC0 172 aa5.94□□□□□ -1.46
KDM4A-201ENST00000372396 VWFP04275 2813 aa5.93□□□□□ -1.46
KDM4A-201ENST00000372396 CUBNO60494 3623 aa5.92□□□□□ -1.46
KDM4A-201ENST00000372396 CRIPTQ9P021 101 aa5.92□□□□□ -1.46
KDM4A-201ENST00000372396 NDUFAF8A1L188 74 aa5.91□□□□□ -1.46
KDM4A-201ENST00000372396 A8MUU9 505 aa5.89□□□□□ -1.47
KDM4A-201ENST00000372396 LUZP6Q538Z0 58 aa5.87□□□□□ -1.47
KDM4A-201ENST00000372396 FBN1P35555 2871 aaKnown RBP5.86□□□□□ -1.47
KDM4A-201ENST00000372396 NOTCH2NLQ7Z3S9 236 aa5.83□□□□□ -1.48
KDM4A-201ENST00000372396 C9orf92A6NGG3 77 aa5.83□□□□□ -1.48
KDM4A-201ENST00000372396 C20orf166-AS1Q96NR2 134 aa5.83□□□□□ -1.48
KDM4A-201ENST00000372396 Q6ZSA8 131 aa5.82□□□□□ -1.48
KDM4A-201ENST00000372396 FLG2Q5D862 2391 aaPredicted RBP5.79□□□□□ -1.48
KDM4A-201ENST00000372396 J3QL48 77 aa5.78□□□□□ -1.48
KDM4A-201ENST00000372396 A0A1B0GU33 70 aa5.78□□□□□ -1.48
KDM4A-201ENST00000372396 Q5VSD8 79 aa5.78□□□□□ -1.48
KDM4A-201ENST00000372396 P0C880 135 aa5.77□□□□□ -1.49
KDM4A-201ENST00000372396 RPS29P62273 56 aaKnown RBP5.76□□□□□ -1.49
KDM4A-201ENST00000372396 Q5W150 140 aa5.75□□□□□ -1.49
KDM4A-201ENST00000372396 KRTAP13-2Q52LG2 175 aa5.74□□□□□ -1.49
KDM4A-201ENST00000372396 TRRAPQ9Y4A5 3859 aa5.74□□□□□ -1.49
KDM4A-201ENST00000372396 PKD1L1Q8TDX9 2849 aa5.7□□□□□ -1.5
KDM4A-201ENST00000372396 ANK2Q01484 3957 aa5.67□□□□□ -1.5
KDM4A-201ENST00000372396 Q8N1X5 172 aa5.67□□□□□ -1.5
KDM4A-201ENST00000372396 SEC61BP60468 96 aaKnown RBP5.65□□□□□ -1.5
KDM4A-201ENST00000372396 KRTAP1-4P0C5Y4 121 aa5.64□□□□□ -1.51
KDM4A-201ENST00000372396 H1FX-AS1Q4G0G2 97 aa5.63□□□□□ -1.51
KDM4A-201ENST00000372396 CMYA5Q8N3K9 4069 aa5.63□□□□□ -1.51
KDM4A-201ENST00000372396 H0YAA0 97 aa5.6□□□□□ -1.51
KDM4A-201ENST00000372396 TENM2Q9NT68 2774 aa5.6□□□□□ -1.51
KDM4A-201ENST00000372396 A0A1B0GVY2 172 aa5.58□□□□□ -1.52
KDM4A-201ENST00000372396 HUWE1Q7Z6Z7 4374 aaKnown RBP5.57□□□□□ -1.52
KDM4A-201ENST00000372396 DNAH3Q8TD57 4116 aa5.57□□□□□ -1.52
KDM4A-201ENST00000372396 A0A0D9SG42 100 aa5.56□□□□□ -1.52
KDM4A-201ENST00000372396 DNHD1Q96M86 4753 aa5.56□□□□□ -1.52
KDM4A-201ENST00000372396 RPL37P61927 97 aaKnown RBP5.55□□□□□ -1.52
KDM4A-201ENST00000372396 TGP01266 2768 aa5.53□□□□□ -1.52
KDM4A-201ENST00000372396 KRTAP13-3Q3SY46 172 aa5.5□□□□□ -1.53
KDM4A-201ENST00000372396 COX6B2Q6YFQ2 88 aa5.49□□□□□ -1.53
KDM4A-201ENST00000372396 DMBT1Q9UGM3 2413 aaPredicted RBP5.48□□□□□ -1.53
KDM4A-201ENST00000372396 FBN3Q75N90 2809 aa5.47□□□□□ -1.53
KDM4A-201ENST00000372396 C10orf95Q9H7T3 257 aa5.46□□□□□ -1.54
KDM4A-201ENST00000372396 DNAH9Q9NYC9 4486 aa5.46□□□□□ -1.54
KDM4A-201ENST00000372396 MEGF8Q7Z7M0 2845 aa5.45□□□□□ -1.54
KDM4A-201ENST00000372396 KRTAP15-1Q3LI76 137 aa5.44□□□□□ -1.54
KDM4A-201ENST00000372396 S4R3F8 94 aa5.42□□□□□ -1.54
KDM4A-201ENST00000372396 PRKDCP78527 4128 aaKnown RBP5.41□□□□□ -1.54
KDM4A-201ENST00000372396 TPRXLQ17RH7 258 aa5.4□□□□□ -1.55
KDM4A-201ENST00000372396 COL7A1Q02388 2944 aa5.39□□□□□ -1.55
KDM4A-201ENST00000372396 KRTAP10-8P60410 259 aa5.36□□□□□ -1.55
KDM4A-201ENST00000372396 CAMK2N1Q7Z7J9 78 aa5.34□□□□□ -1.55
KDM4A-201ENST00000372396 ALMS1Q8TCU4 4167 aa5.33□□□□□ -1.56
KDM4A-201ENST00000372396 XP32Q5T750 250 aa5.31□□□□□ -1.56
KDM4A-201ENST00000372396 DYNC2H1Q8NCM8 4307 aaKnown RBP5.26□□□□□ -1.57
KDM4A-201ENST00000372396 DNAH7Q8WXX0 4024 aa5.25□□□□□ -1.57
KDM4A-201ENST00000372396 PLECQ15149 4684 aaKnown RBP5.24□□□□□ -1.57
KDM4A-201ENST00000372396 VPS13DQ5THJ4 4388 aa5.24□□□□□ -1.57
KDM4A-201ENST00000372396 PLAC4Q8WY50 150 aa5.23□□□□□ -1.57
KDM4A-201ENST00000372396 KRTAP10-4P60372 401 aaPredicted RBP5.22□□□□□ -1.57
KDM4A-201ENST00000372396 STARD9Q9P2P6 4700 aa5.22□□□□□ -1.57
KDM4A-201ENST00000372396 SRRM2Q9UQ35 2752 aaKnown RBP5.21□□□□□ -1.58
KDM4A-201ENST00000372396 CSMD3Q7Z407 3707 aa5.2□□□□□ -1.58
KDM4A-201ENST00000372396 DNAH1Q9P2D7 4330 aa5.19□□□□□ -1.58
KDM4A-201ENST00000372396 M0R2T5 61 aa5.16□□□□□ -1.58
KDM4A-201ENST00000372396 R4GN34 69 aa5.16□□□□□ -1.58
KDM4A-201ENST00000372396 DNAH17Q9UFH2 4485 aa5.15□□□□□ -1.59
KDM4A-201ENST00000372396 LYSTQ99698 3801 aa5.11□□□□□ -1.59
KDM4A-201ENST00000372396 M0QZ58 72 aa5.1□□□□□ -1.59
KDM4A-201ENST00000372396 DNAH6Q9C0G6 4158 aa5.09□□□□□ -1.59
KDM4A-201ENST00000372396 MT1HL1P0DM35 61 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms