RNA–Protein interactions for RNA: ENST00000368841.6

SNX27-202, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best)

Gene SNX27, Length 7,070 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-202ENST00000368841 COL6A5A8TX70 2615 aa9.76□□□□□ -0.85
SNX27-202ENST00000368841 EYSQ5T1H1 3165 aa9.71□□□□□ -0.85
SNX27-202ENST00000368841 XP32Q5T750 250 aa9.7□□□□□ -0.86
SNX27-202ENST00000368841 DSPP15924 2871 aaKnown RBP9.7□□□□□ -0.86
SNX27-202ENST00000368841 MAP1AP78559 2803 aaPredicted RBP9.65□□□□□ -0.86
SNX27-202ENST00000368841 BOD1L1Q8NFC6 3051 aa9.64□□□□□ -0.87
SNX27-202ENST00000368841 KRTAP10-10P60014 251 aa9.64□□□□□ -0.87
SNX27-202ENST00000368841 SETXQ7Z333 2677 aaKnown RBP9.63□□□□□ -0.87
SNX27-202ENST00000368841 ITPR2Q14571 2701 aa9.6□□□□□ -0.87
SNX27-202ENST00000368841 DMXL2Q8TDJ6 3036 aa9.6□□□□□ -0.87
SNX27-202ENST00000368841 STAB2Q8WWQ8 2551 aa9.59□□□□□ -0.87
SNX27-202ENST00000368841 BAHCC1Q9P281 2608 aa9.57□□□□□ -0.88
SNX27-202ENST00000368841 ZNF292O60281 2723 aa9.56□□□□□ -0.88
SNX27-202ENST00000368841 NOTCH1P46531 2555 aa9.55□□□□□ -0.88
SNX27-202ENST00000368841 H0YAA0 97 aa9.54□□□□□ -0.88
SNX27-202ENST00000368841 APCP25054 2843 aa9.53□□□□□ -0.88
SNX27-202ENST00000368841 FRYLO94915 3013 aa9.53□□□□□ -0.88
SNX27-202ENST00000368841 KRTAP1-4P0C5Y4 121 aa9.53□□□□□ -0.88
SNX27-202ENST00000368841 LOC400499M0QZD8 3231 aa9.53□□□□□ -0.88
SNX27-202ENST00000368841 ASH1LQ9NR48 2969 aaKnown RBP9.5□□□□□ -0.89
SNX27-202ENST00000368841 ATMQ13315 3056 aa9.5□□□□□ -0.89
SNX27-202ENST00000368841 IGSF10Q6WRI0 2623 aa9.47□□□□□ -0.89
SNX27-202ENST00000368841 TACC2O95359 2948 aa9.45□□□□□ -0.9
SNX27-202ENST00000368841 LAMA5O15230 3695 aa9.44□□□□□ -0.9
SNX27-202ENST00000368841 HIVEP1P15822 2718 aa9.42□□□□□ -0.9
SNX27-202ENST00000368841 UTP20O75691 2785 aaKnown RBP9.41□□□□□ -0.9
SNX27-202ENST00000368841 COL12A1Q99715 3063 aa9.4□□□□□ -0.9
SNX27-202ENST00000368841 ADGRG4Q8IZF6 3080 aa9.39□□□□□ -0.91
SNX27-202ENST00000368841 NSD1Q96L73 2696 aaPredicted RBP9.39□□□□□ -0.91
SNX27-202ENST00000368841 UBR5O95071 2799 aaPredicted RBP9.39□□□□□ -0.91
SNX27-202ENST00000368841 CSMD1Q96PZ7 3565 aa9.39□□□□□ -0.91
SNX27-202ENST00000368841 P0C880 135 aa9.39□□□□□ -0.91
SNX27-202ENST00000368841 ZFHX4Q86UP3 3567 aa9.36□□□□□ -0.91
SNX27-202ENST00000368841 PP632Q6XCG6 107 aa9.35□□□□□ -0.91
SNX27-202ENST00000368841 ITPR1Q14643 2758 aa9.3□□□□□ -0.92
SNX27-202ENST00000368841 ZZEF1O43149 2961 aa9.3□□□□□ -0.92
SNX27-202ENST00000368841 TPRXLQ17RH7 258 aa9.3□□□□□ -0.92
SNX27-202ENST00000368841 NBEAQ8NFP9 2946 aa9.29□□□□□ -0.92
SNX27-202ENST00000368841 PRO2289Q9P1D8 64 aa9.28□□□□□ -0.92
SNX27-202ENST00000368841 KMT2BQ9UMN6 2715 aaPredicted RBP9.28□□□□□ -0.92
SNX27-202ENST00000368841 NBPF19A0A087WUL8 3843 aa9.26□□□□□ -0.93
SNX27-202ENST00000368841 KRTAP21-3Q3LHN1 58 aa9.24□□□□□ -0.93
SNX27-202ENST00000368841 KRTAP13-3Q3SY46 172 aa9.22□□□□□ -0.93
SNX27-202ENST00000368841 RELNP78509 3460 aa9.2□□□□□ -0.94
SNX27-202ENST00000368841 KRTAP12-2P59991 146 aa9.13□□□□□ -0.95
SNX27-202ENST00000368841 CELSR2Q9HCU4 2923 aa9.05□□□□□ -0.96
SNX27-202ENST00000368841 DMXL1Q9Y485 3027 aa9.04□□□□□ -0.96
SNX27-202ENST00000368841 TNRC18O15417 2968 aaPredicted RBP9.03□□□□□ -0.96
SNX27-202ENST00000368841 SPENQ96T58 3664 aaKnown RBP8.98□□□□□ -0.97
SNX27-202ENST00000368841 SMG1Q96Q15 3661 aaKnown RBP8.93□□□□□ -0.98
SNX27-202ENST00000368841 DCHS2Q6V1P9 2916 aa8.92□□□□□ -0.98
SNX27-202ENST00000368841 DMDP11532 3685 aa8.88□□□□□ -0.99
SNX27-202ENST00000368841 CELSR1Q9NYQ6 3014 aa8.84□□□□□ -0.99
SNX27-202ENST00000368841 TENM4Q6N022 2769 aa8.84□□□□□ -0.99
SNX27-202ENST00000368841 SVEP1Q4LDE5 3571 aa8.83□□□□□ -1
SNX27-202ENST00000368841 CUBNO60494 3623 aa8.83□□□□□ -1
SNX27-202ENST00000368841 FLNCQ14315 2725 aa8.81□□□□□ -1
SNX27-202ENST00000368841 HRNRQ86YZ3 2850 aaPredicted RBP8.8□□□□□ -1
SNX27-202ENST00000368841 TENM2Q9NT68 2774 aa8.79□□□□□ -1
SNX27-202ENST00000368841 KRTAP13-4Q3LI77 160 aa8.75□□□□□ -1.01
SNX27-202ENST00000368841 CRCT1Q9UGL9 99 aa8.74□□□□□ -1.01
SNX27-202ENST00000368841 KRTAP12-1P59990 96 aa8.74□□□□□ -1.01
SNX27-202ENST00000368841 KRTAP15-1Q3LI76 137 aa8.74□□□□□ -1.01
SNX27-202ENST00000368841 FBN2P35556 2912 aa8.73□□□□□ -1.01
SNX27-202ENST00000368841 TENM1Q9UKZ4 2725 aa8.7□□□□□ -1.02
SNX27-202ENST00000368841 TGP01266 2768 aa8.69□□□□□ -1.02
SNX27-202ENST00000368841 ZANQ9Y493 2812 aa8.65□□□□□ -1.03
SNX27-202ENST00000368841 NF1P21359 2839 aa8.63□□□□□ -1.03
SNX27-202ENST00000368841 KRTAP3-1Q9BYR8 98 aa8.6□□□□□ -1.03
SNX27-202ENST00000368841 NIPBLQ6KC79 2804 aaeCLIP8.52□□□□□ -1.05
SNX27-202ENST00000368841 ZFHX3Q15911 3703 aa8.44□□□□□ -1.06
SNX27-202ENST00000368841 ANK3Q12955 4377 aaKnown RBP8.43□□□□□ -1.06
SNX27-202ENST00000368841 CSMD2Q7Z408 3487 aa8.42□□□□□ -1.06
SNX27-202ENST00000368841 VWFP04275 2813 aa8.4□□□□□ -1.06
SNX27-202ENST00000368841 MXRA5Q9NR99 2828 aa8.4□□□□□ -1.07
SNX27-202ENST00000368841 PKD1L1Q8TDX9 2849 aa8.37□□□□□ -1.07
SNX27-202ENST00000368841 TENM3Q9P273 2699 aa8.34□□□□□ -1.07
SNX27-202ENST00000368841 MUC3AQ02505 3323 aa8.33□□□□□ -1.08
SNX27-202ENST00000368841 KRTAP10-6P60371 365 aaPredicted RBP8.29□□□□□ -1.08
SNX27-202ENST00000368841 CSMD3Q7Z407 3707 aa8.24□□□□□ -1.09
SNX27-202ENST00000368841 VPS13CQ709C8 3753 aa8.24□□□□□ -1.09
SNX27-202ENST00000368841 KRTAP10-12P60413 245 aa8.2□□□□□ -1.1
SNX27-202ENST00000368841 KRTAP4-5Q9BYR2 181 aa8.18□□□□□ -1.1
SNX27-202ENST00000368841 HUWE1Q7Z6Z7 4374 aaKnown RBP8.17□□□□□ -1.1
SNX27-202ENST00000368841 PDZD2O15018 2839 aa8.16□□□□□ -1.1
SNX27-202ENST00000368841 TRRAPQ9Y4A5 3859 aa8.13□□□□□ -1.11
SNX27-202ENST00000368841 BSNQ9UPA5 3926 aa8.09□□□□□ -1.11
SNX27-202ENST00000368841 MT1HL1P0DM35 61 aa8.06□□□□□ -1.12
SNX27-202ENST00000368841 KRTAP3-3Q9BYR6 98 aa8□□□□□ -1.13
SNX27-202ENST00000368841 LCE3AQ5TA76 89 aa7.98□□□□□ -1.13
SNX27-202ENST00000368841 KRTAP3-2Q9BYR7 98 aa7.95□□□□□ -1.14
SNX27-202ENST00000368841 ALMS1Q8TCU4 4167 aa7.92□□□□□ -1.14
SNX27-202ENST00000368841 FBN1P35555 2871 aaKnown RBP7.92□□□□□ -1.14
SNX27-202ENST00000368841 AKAP9Q99996 3911 aa7.91□□□□□ -1.14
SNX27-202ENST00000368841 KRTAP12-3P60328 96 aa7.9□□□□□ -1.15
SNX27-202ENST00000368841 MEGF8Q7Z7M0 2845 aa7.87□□□□□ -1.15
SNX27-202ENST00000368841 LORP23490 312 aaPredicted RBP7.85□□□□□ -1.15
SNX27-202ENST00000368841 INE1O15225 51 aa7.85□□□□□ -1.15
SNX27-202ENST00000368841 FBN3Q75N90 2809 aa7.84□□□□□ -1.16
SNX27-202ENST00000368841 KRTAP10-5P60370 271 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms