RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 LOC400499M0QZD8 3231 aa5.56□□□□□ -1.52
CHD3-202ENST00000358181 NBEAL1Q6ZS30 2694 aa5.55□□□□□ -1.52
CHD3-202ENST00000358181 RELNP78509 3460 aa5.54□□□□□ -1.52
CHD3-202ENST00000358181 SPRR1AP35321 89 aa5.54□□□□□ -1.52
CHD3-202ENST00000358181 KRTAP10-10P60014 251 aa5.54□□□□□ -1.52
CHD3-202ENST00000358181 STAB1Q9NY15 2570 aa5.53□□□□□ -1.52
CHD3-202ENST00000358181 BAHCC1Q9P281 2608 aa5.53□□□□□ -1.52
CHD3-202ENST00000358181 UNC79Q9P2D8 2635 aa5.53□□□□□ -1.52
CHD3-202ENST00000358181 COL6A5A8TX70 2615 aa5.53□□□□□ -1.52
CHD3-202ENST00000358181 ZNF292O60281 2723 aa5.53□□□□□ -1.52
CHD3-202ENST00000358181 ASH1LQ9NR48 2969 aaKnown RBP5.52□□□□□ -1.53
CHD3-202ENST00000358181 NBEAQ8NFP9 2946 aa5.51□□□□□ -1.53
CHD3-202ENST00000358181 NOTCH2NLQ7Z3S9 236 aa5.51□□□□□ -1.53
CHD3-202ENST00000358181 KRTAP11-1Q8IUC1 163 aa5.5□□□□□ -1.53
CHD3-202ENST00000358181 DMDP11532 3685 aa5.49□□□□□ -1.53
CHD3-202ENST00000358181 DMXL1Q9Y485 3027 aa5.47□□□□□ -1.53
CHD3-202ENST00000358181 IGSF10Q6WRI0 2623 aa5.47□□□□□ -1.53
CHD3-202ENST00000358181 NOTCH1P46531 2555 aa5.46□□□□□ -1.54
CHD3-202ENST00000358181 ITPR2Q14571 2701 aa5.45□□□□□ -1.54
CHD3-202ENST00000358181 ZZEF1O43149 2961 aa5.43□□□□□ -1.54
CHD3-202ENST00000358181 TNRC18O15417 2968 aaPredicted RBP5.43□□□□□ -1.54
CHD3-202ENST00000358181 PRO2289Q9P1D8 64 aa5.42□□□□□ -1.54
CHD3-202ENST00000358181 UBR5O95071 2799 aaPredicted RBP5.42□□□□□ -1.54
CHD3-202ENST00000358181 DMBT1Q9UGM3 2413 aaPredicted RBP5.42□□□□□ -1.54
CHD3-202ENST00000358181 KRTAP4-16G5E9R7 235 aaPredicted RBP5.4□□□□□ -1.54
CHD3-202ENST00000358181 SPENQ96T58 3664 aaKnown RBP5.39□□□□□ -1.55
CHD3-202ENST00000358181 UTP20O75691 2785 aaKnown RBP5.38□□□□□ -1.55
CHD3-202ENST00000358181 HIVEP1P15822 2718 aa5.38□□□□□ -1.55
CHD3-202ENST00000358181 NBPF19A0A087WUL8 3843 aa5.36□□□□□ -1.55
CHD3-202ENST00000358181 APCP25054 2843 aa5.35□□□□□ -1.55
CHD3-202ENST00000358181 ITPR1Q14643 2758 aa5.35□□□□□ -1.55
CHD3-202ENST00000358181 SMG1Q96Q15 3661 aaKnown RBP5.35□□□□□ -1.55
CHD3-202ENST00000358181 KRTAP7-1Q8IUC3 87 aa5.34□□□□□ -1.56
CHD3-202ENST00000358181 NSD1Q96L73 2696 aaPredicted RBP5.33□□□□□ -1.56
CHD3-202ENST00000358181 Q6ZRN7 208 aaPredicted RBP5.31□□□□□ -1.56
CHD3-202ENST00000358181 ZFHX3Q15911 3703 aa5.3□□□□□ -1.56
CHD3-202ENST00000358181 STAB2Q8WWQ8 2551 aa5.3□□□□□ -1.56
CHD3-202ENST00000358181 KRTAP13-2Q52LG2 175 aa5.3□□□□□ -1.56
CHD3-202ENST00000358181 KRTAP29-1A8MX34 341 aaPredicted RBP5.29□□□□□ -1.56
CHD3-202ENST00000358181 CELSR2Q9HCU4 2923 aa5.28□□□□□ -1.56
CHD3-202ENST00000358181 SVEP1Q4LDE5 3571 aa5.28□□□□□ -1.56
CHD3-202ENST00000358181 RPS29P62273 56 aaKnown RBP5.26□□□□□ -1.57
CHD3-202ENST00000358181 CRCT1Q9UGL9 99 aa5.23□□□□□ -1.57
CHD3-202ENST00000358181 PP632Q6XCG6 107 aa5.23□□□□□ -1.57
CHD3-202ENST00000358181 FLNCQ14315 2725 aa5.21□□□□□ -1.58
CHD3-202ENST00000358181 KMT2BQ9UMN6 2715 aaPredicted RBP5.21□□□□□ -1.58
CHD3-202ENST00000358181 CUBNO60494 3623 aa5.19□□□□□ -1.58
CHD3-202ENST00000358181 XP32Q5T750 250 aa5.19□□□□□ -1.58
CHD3-202ENST00000358181 DCHS2Q6V1P9 2916 aa5.18□□□□□ -1.58
CHD3-202ENST00000358181 FBN2P35556 2912 aa5.14□□□□□ -1.59
CHD3-202ENST00000358181 KRTAP13-1Q8IUC0 172 aa5.12□□□□□ -1.59
CHD3-202ENST00000358181 ZANQ9Y493 2812 aa5.11□□□□□ -1.59
CHD3-202ENST00000358181 CELSR1Q9NYQ6 3014 aa5.1□□□□□ -1.59
CHD3-202ENST00000358181 TENM4Q6N022 2769 aa5.1□□□□□ -1.59
CHD3-202ENST00000358181 MUC3AQ02505 3323 aa5.09□□□□□ -1.59
CHD3-202ENST00000358181 HRNRQ86YZ3 2850 aaPredicted RBP5.09□□□□□ -1.6
CHD3-202ENST00000358181 KRTAP12-2P59991 146 aa5.09□□□□□ -1.6
CHD3-202ENST00000358181 CSMD2Q7Z408 3487 aa5.02□□□□□ -1.61
CHD3-202ENST00000358181 NF1P21359 2839 aa5.01□□□□□ -1.61
CHD3-202ENST00000358181 NIPBLQ6KC79 2804 aaeCLIP5□□□□□ -1.611e-6■■■□□ 16.9
CHD3-202ENST00000358181 KRTAP15-1Q3LI76 137 aa5□□□□□ -1.61
CHD3-202ENST00000358181 H0YAA0 97 aa5□□□□□ -1.61
CHD3-202ENST00000358181 TPRXLQ17RH7 258 aa4.99□□□□□ -1.61
CHD3-202ENST00000358181 TENM2Q9NT68 2774 aa4.97□□□□□ -1.61
CHD3-202ENST00000358181 KRTAP1-4P0C5Y4 121 aa4.97□□□□□ -1.61
CHD3-202ENST00000358181 TENM1Q9UKZ4 2725 aa4.97□□□□□ -1.61
CHD3-202ENST00000358181 VPS13CQ709C8 3753 aa4.96□□□□□ -1.62
CHD3-202ENST00000358181 PKD1L1Q8TDX9 2849 aa4.92□□□□□ -1.62
CHD3-202ENST00000358181 KRTAP21-3Q3LHN1 58 aa4.91□□□□□ -1.62
CHD3-202ENST00000358181 VWFP04275 2813 aa4.89□□□□□ -1.63
CHD3-202ENST00000358181 BSNQ9UPA5 3926 aa4.85□□□□□ -1.63
CHD3-202ENST00000358181 MXRA5Q9NR99 2828 aa4.85□□□□□ -1.63
CHD3-202ENST00000358181 KRTAP13-3Q3SY46 172 aa4.85□□□□□ -1.63
CHD3-202ENST00000358181 CSMD3Q7Z407 3707 aa4.82□□□□□ -1.64
CHD3-202ENST00000358181 TENM3Q9P273 2699 aa4.78□□□□□ -1.64
CHD3-202ENST00000358181 AKAP9Q99996 3911 aa4.77□□□□□ -1.65
CHD3-202ENST00000358181 TRRAPQ9Y4A5 3859 aa4.76□□□□□ -1.65
CHD3-202ENST00000358181 ANK3Q12955 4377 aaKnown RBP4.75□□□□□ -1.65
CHD3-202ENST00000358181 TGP01266 2768 aa4.75□□□□□ -1.65
CHD3-202ENST00000358181 KRTAP10-6P60371 365 aaPredicted RBP4.74□□□□□ -1.65
CHD3-202ENST00000358181 KRTAP13-4Q3LI77 160 aa4.73□□□□□ -1.65
CHD3-202ENST00000358181 FBN1P35555 2871 aaKnown RBP4.7□□□□□ -1.66
CHD3-202ENST00000358181 PDZD2O15018 2839 aa4.69□□□□□ -1.66
CHD3-202ENST00000358181 LORP23490 312 aaPredicted RBP4.62□□□□□ -1.67
CHD3-202ENST00000358181 KRTAP10-5P60370 271 aa4.58□□□□□ -1.68
CHD3-202ENST00000358181 KRTAP12-1P59990 96 aa4.56□□□□□ -1.68
CHD3-202ENST00000358181 INE1O15225 51 aa4.56□□□□□ -1.68
CHD3-202ENST00000358181 KRTAP10-12P60413 245 aa4.55□□□□□ -1.68
CHD3-202ENST00000358181 OTOGQ6ZRI0 2925 aa4.54□□□□□ -1.68
CHD3-202ENST00000358181 HUWE1Q7Z6Z7 4374 aaKnown RBP4.53□□□□□ -1.68
CHD3-202ENST00000358181 SRRM2Q9UQ35 2752 aaKnown RBP4.52□□□□□ -1.69
CHD3-202ENST00000358181 ZNF469Q96JG9 3925 aaPredicted RBP4.49□□□□□ -1.69
CHD3-202ENST00000358181 FBN3Q75N90 2809 aa4.49□□□□□ -1.69
CHD3-202ENST00000358181 KRTAP4-5Q9BYR2 181 aa4.47□□□□□ -1.69
CHD3-202ENST00000358181 FRAS1Q86XX4 4008 aa4.47□□□□□ -1.69
CHD3-202ENST00000358181 COL7A1Q02388 2944 aa4.46□□□□□ -1.69
CHD3-202ENST00000358181 KRTAP3-1Q9BYR8 98 aa4.46□□□□□ -1.7
CHD3-202ENST00000358181 MEGF8Q7Z7M0 2845 aa4.45□□□□□ -1.7
CHD3-202ENST00000358181 KRTAP10-7P60409 375 aaPredicted RBP4.43□□□□□ -1.7
CHD3-202ENST00000358181 KRTAP8-1Q8IUC2 63 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms