RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 NSD1Q96L73 2696 aaPredicted RBP7.52□□□□□ -1.21
LMX1B-201ENST00000355497 COL6A3P12111 3177 aa7.52□□□□□ -1.21
LMX1B-201ENST00000355497 SPTBN5Q9NRC6 3674 aaKnown RBP7.49□□□□□ -1.21
LMX1B-201ENST00000355497 DNAH14Q0VDD8 3507 aa7.49□□□□□ -1.21
LMX1B-201ENST00000355497 VCANP13611 3396 aa7.48□□□□□ -1.21
LMX1B-201ENST00000355497 REV3LO60673 3130 aa7.47□□□□□ -1.21
LMX1B-201ENST00000355497 MAP1AP78559 2803 aaPredicted RBP7.47□□□□□ -1.21
LMX1B-201ENST00000355497 BAHCC1Q9P281 2608 aa7.45□□□□□ -1.22
LMX1B-201ENST00000355497 ITPR2Q14571 2701 aa7.44□□□□□ -1.22
LMX1B-201ENST00000355497 KRTAP12-2P59991 146 aa7.43□□□□□ -1.22
LMX1B-201ENST00000355497 KMT2BQ9UMN6 2715 aaPredicted RBP7.42□□□□□ -1.22
LMX1B-201ENST00000355497 CELSR3Q9NYQ7 3312 aa7.41□□□□□ -1.22
LMX1B-201ENST00000355497 FLNCQ14315 2725 aa7.4□□□□□ -1.22
LMX1B-201ENST00000355497 UBR5O95071 2799 aaPredicted RBP7.39□□□□□ -1.23
LMX1B-201ENST00000355497 ATMQ13315 3056 aa7.37□□□□□ -1.23
LMX1B-201ENST00000355497 KRTAP13-4Q3LI77 160 aa7.37□□□□□ -1.23
LMX1B-201ENST00000355497 LRBAP50851 2863 aa7.34□□□□□ -1.23
LMX1B-201ENST00000355497 DMXL2Q8TDJ6 3036 aa7.33□□□□□ -1.24
LMX1B-201ENST00000355497 APCP25054 2843 aa7.33□□□□□ -1.24
LMX1B-201ENST00000355497 ADGRG4Q8IZF6 3080 aa7.33□□□□□ -1.24
LMX1B-201ENST00000355497 ITPR1Q14643 2758 aa7.33□□□□□ -1.24
LMX1B-201ENST00000355497 UTP20O75691 2785 aaKnown RBP7.32□□□□□ -1.24
LMX1B-201ENST00000355497 BOD1L1Q8NFC6 3051 aa7.32□□□□□ -1.24
LMX1B-201ENST00000355497 FRYLO94915 3013 aa7.31□□□□□ -1.24
LMX1B-201ENST00000355497 KALRNO60229 2985 aa7.3□□□□□ -1.24
LMX1B-201ENST00000355497 EYSQ5T1H1 3165 aa7.28□□□□□ -1.24
LMX1B-201ENST00000355497 NBEAQ8NFP9 2946 aa7.28□□□□□ -1.24
LMX1B-201ENST00000355497 COL12A1Q99715 3063 aa7.27□□□□□ -1.25
LMX1B-201ENST00000355497 KRTAP12-1P59990 96 aa7.25□□□□□ -1.25
LMX1B-201ENST00000355497 KRTAP15-1Q3LI76 137 aa7.23□□□□□ -1.25
LMX1B-201ENST00000355497 HRNRQ86YZ3 2850 aaPredicted RBP7.22□□□□□ -1.25
LMX1B-201ENST00000355497 DMXL1Q9Y485 3027 aa7.19□□□□□ -1.26
LMX1B-201ENST00000355497 HIVEP1P15822 2718 aa7.19□□□□□ -1.26
LMX1B-201ENST00000355497 FREM2Q5SZK8 3169 aa7.18□□□□□ -1.26
LMX1B-201ENST00000355497 USP34Q70CQ2 3546 aa7.17□□□□□ -1.26
LMX1B-201ENST00000355497 TACC2O95359 2948 aa7.12□□□□□ -1.27
LMX1B-201ENST00000355497 ZZEF1O43149 2961 aa7.11□□□□□ -1.27
LMX1B-201ENST00000355497 SPEGQ15772 3267 aa7.06□□□□□ -1.28
LMX1B-201ENST00000355497 NIPBLQ6KC79 2804 aaeCLIP7.05□□□□□ -1.28
LMX1B-201ENST00000355497 KRTAP3-1Q9BYR8 98 aa7.04□□□□□ -1.28
LMX1B-201ENST00000355497 ZANQ9Y493 2812 aa7.04□□□□□ -1.28
LMX1B-201ENST00000355497 INE1O15225 51 aa7.03□□□□□ -1.28
LMX1B-201ENST00000355497 LOC400499M0QZD8 3231 aa7.01□□□□□ -1.29
LMX1B-201ENST00000355497 ASH1LQ9NR48 2969 aaKnown RBP6.99□□□□□ -1.29
LMX1B-201ENST00000355497 TENM4Q6N022 2769 aa6.98□□□□□ -1.29
LMX1B-201ENST00000355497 CRYBG3Q68DQ2 2970 aa6.97□□□□□ -1.29
LMX1B-201ENST00000355497 MYO15AQ9UKN7 3530 aa6.95□□□□□ -1.3
LMX1B-201ENST00000355497 CFAP47Q6ZTR5 3102 aa6.92□□□□□ -1.3
LMX1B-201ENST00000355497 TGP01266 2768 aa6.92□□□□□ -1.3
LMX1B-201ENST00000355497 KRTAP10-6P60371 365 aaPredicted RBP6.89□□□□□ -1.31
LMX1B-201ENST00000355497 MUC3AQ02505 3323 aa6.88□□□□□ -1.31
LMX1B-201ENST00000355497 CELSR2Q9HCU4 2923 aa6.88□□□□□ -1.31
LMX1B-201ENST00000355497 CRCT1Q9UGL9 99 aa6.86□□□□□ -1.31
LMX1B-201ENST00000355497 DCHS2Q6V1P9 2916 aa6.84□□□□□ -1.31
LMX1B-201ENST00000355497 FBN2P35556 2912 aa6.84□□□□□ -1.31
LMX1B-201ENST00000355497 DMDP11532 3685 aa6.8□□□□□ -1.32
LMX1B-201ENST00000355497 DCHS1Q96JQ0 3298 aa6.78□□□□□ -1.32
LMX1B-201ENST00000355497 MXRA5Q9NR99 2828 aa6.78□□□□□ -1.32
LMX1B-201ENST00000355497 NF1P21359 2839 aa6.78□□□□□ -1.32
LMX1B-201ENST00000355497 PDZD2O15018 2839 aa6.75□□□□□ -1.33
LMX1B-201ENST00000355497 TENM2Q9NT68 2774 aa6.74□□□□□ -1.33
LMX1B-201ENST00000355497 TENM1Q9UKZ4 2725 aa6.73□□□□□ -1.33
LMX1B-201ENST00000355497 KRTAP10-12P60413 245 aa6.73□□□□□ -1.33
LMX1B-201ENST00000355497 RELNP78509 3460 aa6.7□□□□□ -1.34
LMX1B-201ENST00000355497 TENM3Q9P273 2699 aa6.69□□□□□ -1.34
LMX1B-201ENST00000355497 WDFY3Q8IZQ1 3526 aa6.67□□□□□ -1.34
LMX1B-201ENST00000355497 KRTAP3-2Q9BYR7 98 aa6.6□□□□□ -1.35
LMX1B-201ENST00000355497 ASPMQ8IZT6 3477 aa6.6□□□□□ -1.35
LMX1B-201ENST00000355497 CELSR1Q9NYQ6 3014 aa6.59□□□□□ -1.35
LMX1B-201ENST00000355497 LAMA5O15230 3695 aa6.58□□□□□ -1.36
LMX1B-201ENST00000355497 ANK3Q12955 4377 aaKnown RBP6.56□□□□□ -1.36
LMX1B-201ENST00000355497 KRTAP3-3Q9BYR6 98 aa6.56□□□□□ -1.36
LMX1B-201ENST00000355497 ZFHX4Q86UP3 3567 aa6.56□□□□□ -1.36
LMX1B-201ENST00000355497 KRTAP12-3P60328 96 aa6.54□□□□□ -1.36
LMX1B-201ENST00000355497 BSNQ9UPA5 3926 aa6.53□□□□□ -1.36
LMX1B-201ENST00000355497 OTOGQ6ZRI0 2925 aa6.51□□□□□ -1.37
LMX1B-201ENST00000355497 MT1HL1P0DM35 61 aa6.49□□□□□ -1.37
LMX1B-201ENST00000355497 KRTAP23-1A1A580 65 aa6.47□□□□□ -1.37
LMX1B-201ENST00000355497 LCE3AQ5TA76 89 aa6.45□□□□□ -1.38
LMX1B-201ENST00000355497 SMG1Q96Q15 3661 aaKnown RBP6.43□□□□□ -1.38
LMX1B-201ENST00000355497 NBPF19A0A087WUL8 3843 aa6.42□□□□□ -1.38
LMX1B-201ENST00000355497 KRTAP10-5P60370 271 aa6.38□□□□□ -1.39
LMX1B-201ENST00000355497 CSMD1Q96PZ7 3565 aa6.37□□□□□ -1.39
LMX1B-201ENST00000355497 VWFP04275 2813 aa6.33□□□□□ -1.4
LMX1B-201ENST00000355497 PKD1L1Q8TDX9 2849 aa6.3□□□□□ -1.4
LMX1B-201ENST00000355497 SPENQ96T58 3664 aaKnown RBP6.28□□□□□ -1.4
LMX1B-201ENST00000355497 FBN1P35555 2871 aaKnown RBP6.27□□□□□ -1.4
LMX1B-201ENST00000355497 KRTAP10-4P60372 401 aaPredicted RBP6.21□□□□□ -1.42
LMX1B-201ENST00000355497 AKAP9Q99996 3911 aa6.2□□□□□ -1.42
LMX1B-201ENST00000355497 LORP23490 312 aaPredicted RBP6.19□□□□□ -1.42
LMX1B-201ENST00000355497 KRTAP4-5Q9BYR2 181 aa6.18□□□□□ -1.42
LMX1B-201ENST00000355497 SVEP1Q4LDE5 3571 aa6.18□□□□□ -1.42
LMX1B-201ENST00000355497 KRTAP8-1Q8IUC2 63 aa6.18□□□□□ -1.42
LMX1B-201ENST00000355497 HUWE1Q7Z6Z7 4374 aaKnown RBP6.13□□□□□ -1.43
LMX1B-201ENST00000355497 TRRAPQ9Y4A5 3859 aa6.1□□□□□ -1.43
LMX1B-201ENST00000355497 ZFHX3Q15911 3703 aa6.09□□□□□ -1.43
LMX1B-201ENST00000355497 SRRM2Q9UQ35 2752 aaKnown RBP6.09□□□□□ -1.43
LMX1B-201ENST00000355497 CSMD2Q7Z408 3487 aa6.08□□□□□ -1.44
LMX1B-201ENST00000355497 MEGF8Q7Z7M0 2845 aa6.05□□□□□ -1.44
LMX1B-201ENST00000355497 ALMS1Q8TCU4 4167 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms