RNA–Protein interactions for RNA: ENST00000346495.6

TSPAN3-202, Transcript of tetraspanin 3, humanhuman

TSL 2 BASIC

Gene TSPAN3, Length 1,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-202ENST00000346495 MMP24-AS1A0A0U1RRL7 71 aa12.25□□□□□ -0.45
TSPAN3-202ENST00000346495 COX7CP15954 63 aa12.25□□□□□ -0.45
TSPAN3-202ENST00000346495 KRTAP29-1A8MX34 341 aaPredicted RBP12.24□□□□□ -0.45
TSPAN3-202ENST00000346495 KIAA1109Q2LD37 5005 aa12.24□□□□□ -0.45
TSPAN3-202ENST00000346495 C8orf17Q9NRJ1 99 aa12.23□□□□□ -0.45
TSPAN3-202ENST00000346495 UQCRQO14949 82 aa12.22□□□□□ -0.45
TSPAN3-202ENST00000346495 KRTAP10-8P60410 259 aa12.21□□□□□ -0.46
TSPAN3-202ENST00000346495 OCR1Q9BZK8 76 aa12.2□□□□□ -0.46
TSPAN3-202ENST00000346495 hDV103S1A0JD37 113 aa12.19□□□□□ -0.46
TSPAN3-202ENST00000346495 CCDC179H3BU77 68 aa12.19□□□□□ -0.46
TSPAN3-202ENST00000346495 C8orf87E5RJ46 101 aa12.17□□□□□ -0.46
TSPAN3-202ENST00000346495 NOTCH2NLQ7Z3S9 236 aa12.13□□□□□ -0.47
TSPAN3-202ENST00000346495 TMEM254Q8TBM7 123 aa12.11□□□□□ -0.47
TSPAN3-202ENST00000346495 LINC00313P59037 77 aa12.1□□□□□ -0.47
TSPAN3-202ENST00000346495 MRPL34Q9BQ48 92 aaKnown RBP12.1□□□□□ -0.47
TSPAN3-202ENST00000346495 C20orf197Q8N268 126 aa12.04□□□□□ -0.48
TSPAN3-202ENST00000346495 TP53AIP1Q9HCN2 124 aa12.02□□□□□ -0.49
TSPAN3-202ENST00000346495 FAT3Q8TDW7 4589 aa12.02□□□□□ -0.49
TSPAN3-202ENST00000346495 LRP1Q07954 4544 aaKnown RBP12.01□□□□□ -0.49
TSPAN3-202ENST00000346495 OXTP01178 125 aa12.01□□□□□ -0.49
TSPAN3-202ENST00000346495 MT1HL1P0DM35 61 aa12.01□□□□□ -0.49
TSPAN3-202ENST00000346495 C5orf47Q569G3 176 aa12.01□□□□□ -0.49
TSPAN3-202ENST00000346495 TNXBP22105 4242 aa12.01□□□□□ -0.49
TSPAN3-202ENST00000346495 NDUFS5O43920 106 aa12□□□□□ -0.49
TSPAN3-202ENST00000346495 KRTAP4-5Q9BYR2 181 aa12□□□□□ -0.49
TSPAN3-202ENST00000346495 FLG2Q5D862 2391 aaPredicted RBP11.98□□□□□ -0.49
TSPAN3-202ENST00000346495 RETNLBQ9BQ08 111 aa11.97□□□□□ -0.49
TSPAN3-202ENST00000346495 KLKP1Q107X0 134 aa11.96□□□□□ -0.5
TSPAN3-202ENST00000346495 KRTAP16-1A8MUX0 517 aa11.95□□□□□ -0.5
TSPAN3-202ENST00000346495 A0A0U1RQV1 116 aa11.93□□□□□ -0.5
TSPAN3-202ENST00000346495 MP68P56378 58 aa11.93□□□□□ -0.5
TSPAN3-202ENST00000346495 SNURFQ9Y675 71 aa11.93□□□□□ -0.5
TSPAN3-202ENST00000346495 Q8N9P0 234 aaPredicted RBP11.93□□□□□ -0.5
TSPAN3-202ENST00000346495 H0Y9P7 68 aa11.91□□□□□ -0.5
TSPAN3-202ENST00000346495 CYSTM1Q9H1C7 97 aa11.91□□□□□ -0.5
TSPAN3-202ENST00000346495 TRAV22A0A0B4J277 110 aa11.9□□□□□ -0.5
TSPAN3-202ENST00000346495 BIRC6Q9NR09 4857 aa11.9□□□□□ -0.5
TSPAN3-202ENST00000346495 H3BPC8 53 aa11.88□□□□□ -0.51
TSPAN3-202ENST00000346495 FP248Q71RG6 208 aaPredicted RBP11.88□□□□□ -0.51
TSPAN3-202ENST00000346495 NDUFC1O43677 76 aa11.85□□□□□ -0.51
TSPAN3-202ENST00000346495 ZCCHC13Q8WW36 166 aaKnown RBP11.84□□□□□ -0.51
TSPAN3-202ENST00000346495 LINC00208Q96KT6 92 aa11.83□□□□□ -0.52
TSPAN3-202ENST00000346495 C9orf92A6NGG3 77 aa11.82□□□□□ -0.52
TSPAN3-202ENST00000346495 MYCBP2O75592 4640 aa11.81□□□□□ -0.52
TSPAN3-202ENST00000346495 H7BZZ5 65 aa11.8□□□□□ -0.52
TSPAN3-202ENST00000346495 C1orf64Q8NEQ6 169 aa11.79□□□□□ -0.52
TSPAN3-202ENST00000346495 Q5W150 140 aa11.78□□□□□ -0.52
TSPAN3-202ENST00000346495 DMBT1Q9UGM3 2413 aaPredicted RBP11.77□□□□□ -0.53
TSPAN3-202ENST00000346495 TMEM258P61165 79 aa11.76□□□□□ -0.53
TSPAN3-202ENST00000346495 KRTAP13-3Q3SY46 172 aa11.76□□□□□ -0.53
TSPAN3-202ENST00000346495 HERC2O95714 4834 aa11.76□□□□□ -0.53
TSPAN3-202ENST00000346495 IGLV7-46A0A075B6I9 117 aa11.75□□□□□ -0.53
TSPAN3-202ENST00000346495 C20orf166-AS1Q96NR2 134 aa11.73□□□□□ -0.53
TSPAN3-202ENST00000346495 A8MUU9 505 aa11.71□□□□□ -0.53
TSPAN3-202ENST00000346495 LOC101927531A0A1B0GV80 90 aa11.68□□□□□ -0.54
TSPAN3-202ENST00000346495 J3QL48 77 aa11.68□□□□□ -0.54
TSPAN3-202ENST00000346495 PRR4Q16378 134 aa11.67□□□□□ -0.54
TSPAN3-202ENST00000346495 ABCA13Q86UQ4 5058 aa11.64□□□□□ -0.55
TSPAN3-202ENST00000346495 FAM236DA0A1B0GTK5 79 aa11.63□□□□□ -0.55
TSPAN3-202ENST00000346495 FAM236CP0DP71 79 aa11.63□□□□□ -0.55
TSPAN3-202ENST00000346495 Q75L30 129 aa11.63□□□□□ -0.55
TSPAN3-202ENST00000346495 ATP5EP56381 51 aaPredicted RBP11.6□□□□□ -0.55
TSPAN3-202ENST00000346495 IGKV2-30P06310 120 aa11.59□□□□□ -0.55
TSPAN3-202ENST00000346495 CYP4F30PQ9H0H9 118 aa11.59□□□□□ -0.55
TSPAN3-202ENST00000346495 PCOTHQ58A44 107 aa11.57□□□□□ -0.56
TSPAN3-202ENST00000346495 XP32Q5T750 250 aa11.54□□□□□ -0.56
TSPAN3-202ENST00000346495 TPRXLQ17RH7 258 aa11.53□□□□□ -0.56
TSPAN3-202ENST00000346495 SPANXA2-OT1Q8N9U9 137 aa11.53□□□□□ -0.56
TSPAN3-202ENST00000346495 RPL37P61927 97 aaKnown RBP11.51□□□□□ -0.57
TSPAN3-202ENST00000346495 IGKV2D-30A0A075B6S6 120 aa11.5□□□□□ -0.57
TSPAN3-202ENST00000346495 ATP11AUNQ6ZP68 121 aa11.47□□□□□ -0.57
TSPAN3-202ENST00000346495 C7orf65Q6ZTY9 151 aa11.47□□□□□ -0.57
TSPAN3-202ENST00000346495 HRES1P13985 223 aa11.4□□□□□ -0.58
TSPAN3-202ENST00000346495 SERP1Q9Y6X1 66 aa11.4□□□□□ -0.58
TSPAN3-202ENST00000346495 RPS28P62857 69 aaKnown RBP11.38□□□□□ -0.59
TSPAN3-202ENST00000346495 SPINK7P58062 85 aa11.35□□□□□ -0.59
TSPAN3-202ENST00000346495 DMAC1Q96GE9 116 aa11.24□□□□□ -0.61
TSPAN3-202ENST00000346495 PCLOQ9Y6V0 5065 aa11.21□□□□□ -0.62
TSPAN3-202ENST00000346495 ACYP2P14621 99 aa11.2□□□□□ -0.62
TSPAN3-202ENST00000346495 C4orf26Q17RF5 130 aa11.19□□□□□ -0.62
TSPAN3-202ENST00000346495 COA5Q86WW8 74 aa11.18□□□□□ -0.62
TSPAN3-202ENST00000346495 LPAP08519 4548 aa11.17□□□□□ -0.62
TSPAN3-202ENST00000346495 SEC61BP60468 96 aaKnown RBP11.16□□□□□ -0.62
TSPAN3-202ENST00000346495 A8MUN3 132 aa11.13□□□□□ -0.63
TSPAN3-202ENST00000346495 LRP2P98164 4655 aa11.11□□□□□ -0.63
TSPAN3-202ENST00000346495 SMIM26A0A096LP01 95 aa11.11□□□□□ -0.63
TSPAN3-202ENST00000346495 COX6B2Q6YFQ2 88 aa11.07□□□□□ -0.64
TSPAN3-202ENST00000346495 KRTAP3-1Q9BYR8 98 aa11.03□□□□□ -0.64
TSPAN3-202ENST00000346495 CHKB-CPT1BH3BT56 60 aa11.02□□□□□ -0.64
TSPAN3-202ENST00000346495 MPLKIPQ8TAP9 179 aa10.93□□□□□ -0.66
TSPAN3-202ENST00000346495 HERC1Q15751 4861 aa10.93□□□□□ -0.66
TSPAN3-202ENST00000346495 RBM12B-AS1Q9P1G2 102 aa10.91□□□□□ -0.66
TSPAN3-202ENST00000346495 MUC17Q685J3 4493 aa10.88□□□□□ -0.67
TSPAN3-202ENST00000346495 HMCN2Q8NDA2 5059 aa10.88□□□□□ -0.67
TSPAN3-202ENST00000346495 Q1T7F1 81 aa10.87□□□□□ -0.67
TSPAN3-202ENST00000346495 V9GYY9 64 aa10.86□□□□□ -0.67
TSPAN3-202ENST00000346495 KRTAP4-1Q9BYQ7 146 aa10.84□□□□□ -0.67
TSPAN3-202ENST00000346495 SPTSSBQ8NFR3 76 aa10.82□□□□□ -0.68
TSPAN3-202ENST00000346495 H1FX-AS1Q4G0G2 97 aa10.8□□□□□ -0.68
TSPAN3-202ENST00000346495 LINC01558Q9Y6Z2 57 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms