RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 FAM229AH3BQW9 127 aa10.9□□□□□ -0.67
SMPD1-201ENST00000342245 STAB1Q9NY15 2570 aa10.87□□□□□ -0.67
SMPD1-201ENST00000342245 WWC2-AS2Q96NR7 200 aa10.86□□□□□ -0.67
SMPD1-201ENST00000342245 DNAH3Q8TD57 4116 aa10.85□□□□□ -0.67
SMPD1-201ENST00000342245 IGLV7-43P04211 117 aa10.85□□□□□ -0.67
SMPD1-201ENST00000342245 IGKV2-30P06310 120 aa10.84□□□□□ -0.67
SMPD1-201ENST00000342245 ROMO1P60602 79 aa10.83□□□□□ -0.68
SMPD1-201ENST00000342245 FLNBO75369 2602 aaKnown RBP10.81□□□□□ -0.68
SMPD1-201ENST00000342245 KRTAP25-1Q3LHN0 102 aa10.81□□□□□ -0.68
SMPD1-201ENST00000342245 MAST4O15021 2626 aa10.79□□□□□ -0.68
SMPD1-201ENST00000342245 NOTCH1P46531 2555 aa10.77□□□□□ -0.69
SMPD1-201ENST00000342245 SRRM2Q9UQ35 2752 aaKnown RBP10.76□□□□□ -0.69
SMPD1-201ENST00000342245 SPINK6Q6UWN8 80 aa10.76□□□□□ -0.69
SMPD1-201ENST00000342245 BAHCC1Q9P281 2608 aa10.75□□□□□ -0.69
SMPD1-201ENST00000342245 HUWE1Q7Z6Z7 4374 aaKnown RBP10.74□□□□□ -0.69
SMPD1-201ENST00000342245 KRTAP1-5Q9BYS1 174 aa10.73□□□□□ -0.69
SMPD1-201ENST00000342245 A8MUU9 505 aa10.7□□□□□ -0.7
SMPD1-201ENST00000342245 LY6G6CO95867 125 aa10.66□□□□□ -0.7
SMPD1-201ENST00000342245 IGKV2D-30A0A075B6S6 120 aa10.65□□□□□ -0.7
SMPD1-201ENST00000342245 SPACA4Q8TDM5 124 aa10.65□□□□□ -0.7
SMPD1-201ENST00000342245 PANO1I0J062 215 aa10.63□□□□□ -0.71
SMPD1-201ENST00000342245 IGLV5-52A0A0A0MRZ9 124 aa10.63□□□□□ -0.71
SMPD1-201ENST00000342245 NBEAL1Q6ZS30 2694 aa10.62□□□□□ -0.71
SMPD1-201ENST00000342245 DNAH10Q8IVF4 4471 aa10.61□□□□□ -0.71
SMPD1-201ENST00000342245 COL6A5A8TX70 2615 aa10.61□□□□□ -0.71
SMPD1-201ENST00000342245 UBE2DNLQ8IWF7 75 aa10.59□□□□□ -0.71
SMPD1-201ENST00000342245 LINC00304Q8N9R0 145 aa10.59□□□□□ -0.71
SMPD1-201ENST00000342245 LYSTQ99698 3801 aa10.59□□□□□ -0.71
SMPD1-201ENST00000342245 ANAPC11Q9NYG5 84 aa10.57□□□□□ -0.72
SMPD1-201ENST00000342245 SSBP3-AS1Q7Z2R9 100 aa10.57□□□□□ -0.72
SMPD1-201ENST00000342245 PSORS1C2Q9UIG4 136 aa10.56□□□□□ -0.72
SMPD1-201ENST00000342245 CIRBP-AS1Q8TBR5 109 aa10.55□□□□□ -0.72
SMPD1-201ENST00000342245 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.54□□□□□ -0.72
SMPD1-201ENST00000342245 DNAH9Q9NYC9 4486 aa10.53□□□□□ -0.72
SMPD1-201ENST00000342245 CSMD3Q7Z407 3707 aa10.52□□□□□ -0.73
SMPD1-201ENST00000342245 H0YAA0 97 aa10.51□□□□□ -0.73
SMPD1-201ENST00000342245 Q6ZSA8 131 aa10.5□□□□□ -0.73
SMPD1-201ENST00000342245 KRTAP16-1A8MUX0 517 aa10.48□□□□□ -0.73
SMPD1-201ENST00000342245 MGAM2Q2M2H8 2515 aa10.48□□□□□ -0.73
SMPD1-201ENST00000342245 P0C880 135 aa10.47□□□□□ -0.73
SMPD1-201ENST00000342245 COL7A1Q02388 2944 aa10.45□□□□□ -0.74
SMPD1-201ENST00000342245 APLNQ9ULZ1 77 aa10.45□□□□□ -0.74
SMPD1-201ENST00000342245 SPINK1P00995 79 aa10.44□□□□□ -0.74
SMPD1-201ENST00000342245 STAB2Q8WWQ8 2551 aa10.44□□□□□ -0.74
SMPD1-201ENST00000342245 K7ERS5 55 aa10.43□□□□□ -0.74
SMPD1-201ENST00000342245 A0A1B0GU33 70 aa10.42□□□□□ -0.74
SMPD1-201ENST00000342245 Q6ZRN7 208 aaPredicted RBP10.41□□□□□ -0.74
SMPD1-201ENST00000342245 DNAH7Q8WXX0 4024 aa10.4□□□□□ -0.74
SMPD1-201ENST00000342245 NBDYA0A0U1RRE5 68 aa10.4□□□□□ -0.75
SMPD1-201ENST00000342245 DYNC2H1Q8NCM8 4307 aaKnown RBP10.36□□□□□ -0.75
SMPD1-201ENST00000342245 H1FX-AS1Q4G0G2 97 aa10.35□□□□□ -0.75
SMPD1-201ENST00000342245 PLECQ15149 4684 aaKnown RBP10.35□□□□□ -0.75
SMPD1-201ENST00000342245 Q8N1X5 172 aa10.29□□□□□ -0.76
SMPD1-201ENST00000342245 DNAH8Q96JB1 4490 aa10.28□□□□□ -0.76
SMPD1-201ENST00000342245 A0A087WTM6 91 aa10.27□□□□□ -0.77
SMPD1-201ENST00000342245 TYMSOSQ8TAI1 123 aa10.26□□□□□ -0.77
SMPD1-201ENST00000342245 NUPR2A6NF83 97 aa10.21□□□□□ -0.77
SMPD1-201ENST00000342245 CRIPTQ9P021 101 aa10.19□□□□□ -0.78
SMPD1-201ENST00000342245 STARD9Q9P2P6 4700 aa10.19□□□□□ -0.78
SMPD1-201ENST00000342245 FRAS1Q86XX4 4008 aa10.16□□□□□ -0.78
SMPD1-201ENST00000342245 SPINT4Q6UDR6 99 aa10.16□□□□□ -0.78
SMPD1-201ENST00000342245 VPS13DQ5THJ4 4388 aa10.15□□□□□ -0.78
SMPD1-201ENST00000342245 KRTAP13-2Q52LG2 175 aa10.12□□□□□ -0.79
SMPD1-201ENST00000342245 C20orf166-AS1Q96NR2 134 aa10.1□□□□□ -0.79
SMPD1-201ENST00000342245 PRKDCP78527 4128 aaKnown RBP10.08□□□□□ -0.8
SMPD1-201ENST00000342245 MEGF8Q7Z7M0 2845 aa10.08□□□□□ -0.8
SMPD1-201ENST00000342245 HECTD4Q9Y4D8 3996 aa10.06□□□□□ -0.8
SMPD1-201ENST00000342245 KMT2AQ03164 3969 aa10.05□□□□□ -0.8
SMPD1-201ENST00000342245 KRTAP15-1Q3LI76 137 aa10.05□□□□□ -0.8
SMPD1-201ENST00000342245 COX6B2Q6YFQ2 88 aa10.05□□□□□ -0.8
SMPD1-201ENST00000342245 DNAH2Q9P225 4427 aa10.04□□□□□ -0.8
SMPD1-201ENST00000342245 NDUFAF8A1L188 74 aa10.04□□□□□ -0.8
SMPD1-201ENST00000342245 RPL37P61927 97 aaKnown RBP10.01□□□□□ -0.81
SMPD1-201ENST00000342245 DNAH17Q9UFH2 4485 aa10.01□□□□□ -0.81
SMPD1-201ENST00000342245 TPRXLQ17RH7 258 aa9.99□□□□□ -0.81
SMPD1-201ENST00000342245 KRTAP3-1Q9BYR8 98 aa9.96□□□□□ -0.81
SMPD1-201ENST00000342245 TGP01266 2768 aa9.94□□□□□ -0.82
SMPD1-201ENST00000342245 FLG2Q5D862 2391 aaPredicted RBP9.94□□□□□ -0.82
SMPD1-201ENST00000342245 A0A0A0MQY5 61 aa9.92□□□□□ -0.82
SMPD1-201ENST00000342245 FBN3Q75N90 2809 aa9.9□□□□□ -0.82
SMPD1-201ENST00000342245 KRTAP1-4P0C5Y4 121 aa9.86□□□□□ -0.83
SMPD1-201ENST00000342245 RPS29P62273 56 aaKnown RBP9.86□□□□□ -0.83
SMPD1-201ENST00000342245 DNHD1Q96M86 4753 aa9.85□□□□□ -0.83
SMPD1-201ENST00000342245 DNAH6Q9C0G6 4158 aa9.81□□□□□ -0.84
SMPD1-201ENST00000342245 DNAH11Q96DT5 4516 aa9.81□□□□□ -0.84
SMPD1-201ENST00000342245 DNAH5Q8TE73 4624 aa9.79□□□□□ -0.84
SMPD1-201ENST00000342245 KRTAP10-2P60368 255 aa9.78□□□□□ -0.84
SMPD1-201ENST00000342245 C10orf95Q9H7T3 257 aa9.75□□□□□ -0.85
SMPD1-201ENST00000342245 KRTAP10-6P60371 365 aaPredicted RBP9.71□□□□□ -0.86
SMPD1-201ENST00000342245 A0A0D9SG42 100 aa9.67□□□□□ -0.86
SMPD1-201ENST00000342245 KRTAP10-1P60331 282 aa9.65□□□□□ -0.86
SMPD1-201ENST00000342245 KRTAP13-4Q3LI77 160 aa9.65□□□□□ -0.86
SMPD1-201ENST00000342245 LRP1BQ9NZR2 4599 aa9.65□□□□□ -0.87
SMPD1-201ENST00000342245 HYDINQ4G0P3 5121 aa9.64□□□□□ -0.87
SMPD1-201ENST00000342245 PKD1P98161 4303 aa9.61□□□□□ -0.87
SMPD1-201ENST00000342245 S4R3F8 94 aa9.61□□□□□ -0.87
SMPD1-201ENST00000342245 C9orf92A6NGG3 77 aa9.59□□□□□ -0.87
SMPD1-201ENST00000342245 FAT2Q9NYQ8 4349 aa9.59□□□□□ -0.87
SMPD1-201ENST00000342245 KRTAP3-2Q9BYR7 98 aa9.56□□□□□ -0.88
SMPD1-201ENST00000342245 LUZP6Q538Z0 58 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms