RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 C20orf197Q8N268 126 aa7.68□□□□□ -1.18
HMGB1-202ENST00000339872 hDV103S1A0JD37 113 aa7.67□□□□□ -1.18
HMGB1-202ENST00000339872 CYSTM1Q9H1C7 97 aa7.65□□□□□ -1.18
HMGB1-202ENST00000339872 SPAG11AQ6PDA7 123 aa7.64□□□□□ -1.19
HMGB1-202ENST00000339872 PKHD1L1Q86WI1 4243 aa7.64□□□□□ -1.19
HMGB1-202ENST00000339872 NOTCH2NLQ7Z3S9 236 aa7.64□□□□□ -1.19
HMGB1-202ENST00000339872 RYR1P21817 5038 aa7.64□□□□□ -1.19
HMGB1-202ENST00000339872 RPS29P62273 56 aaKnown RBP7.62□□□□□ -1.19
HMGB1-202ENST00000339872 KRTAP17-1Q9BYP8 105 aa7.62□□□□□ -1.19
HMGB1-202ENST00000339872 SNURFQ9Y675 71 aa7.62□□□□□ -1.19
HMGB1-202ENST00000339872 TMEM254Q8TBM7 123 aa7.62□□□□□ -1.19
HMGB1-202ENST00000339872 EPPK1P58107 5090 aaKnown RBP7.61□□□□□ -1.19
HMGB1-202ENST00000339872 KLKP1Q107X0 134 aa7.6□□□□□ -1.19
HMGB1-202ENST00000339872 MRPL34Q9BQ48 92 aaKnown RBP7.59□□□□□ -1.19
HMGB1-202ENST00000339872 C8orf87E5RJ46 101 aa7.58□□□□□ -1.2
HMGB1-202ENST00000339872 Q8N1X5 172 aa7.58□□□□□ -1.2
HMGB1-202ENST00000339872 KIAA1109Q2LD37 5005 aa7.58□□□□□ -1.2
HMGB1-202ENST00000339872 NDUFS5O43920 106 aa7.57□□□□□ -1.2
HMGB1-202ENST00000339872 C5orf47Q569G3 176 aa7.57□□□□□ -1.2
HMGB1-202ENST00000339872 A0A0U1RQV1 116 aa7.56□□□□□ -1.2
HMGB1-202ENST00000339872 LINC00313P59037 77 aa7.56□□□□□ -1.2
HMGB1-202ENST00000339872 H0Y9P7 68 aa7.53□□□□□ -1.2
HMGB1-202ENST00000339872 MP68P56378 58 aa7.53□□□□□ -1.2
HMGB1-202ENST00000339872 TP53AIP1Q9HCN2 124 aa7.53□□□□□ -1.2
HMGB1-202ENST00000339872 H7BZZ5 65 aa7.52□□□□□ -1.2
HMGB1-202ENST00000339872 KRTAP10-8P60410 259 aa7.52□□□□□ -1.21
HMGB1-202ENST00000339872 TRAV22A0A0B4J277 110 aa7.51□□□□□ -1.21
HMGB1-202ENST00000339872 TMEM258P61165 79 aa7.51□□□□□ -1.21
HMGB1-202ENST00000339872 LRP1Q07954 4544 aaKnown RBP7.5□□□□□ -1.21
HMGB1-202ENST00000339872 NDUFC1O43677 76 aa7.5□□□□□ -1.21
HMGB1-202ENST00000339872 LINC00208Q96KT6 92 aa7.49□□□□□ -1.21
HMGB1-202ENST00000339872 RETNLBQ9BQ08 111 aa7.49□□□□□ -1.21
HMGB1-202ENST00000339872 ZCCHC13Q8WW36 166 aaKnown RBP7.49□□□□□ -1.21
HMGB1-202ENST00000339872 KRTAP16-1A8MUX0 517 aa7.47□□□□□ -1.21
HMGB1-202ENST00000339872 TNXBP22105 4242 aa7.47□□□□□ -1.21
HMGB1-202ENST00000339872 FLG2Q5D862 2391 aaPredicted RBP7.46□□□□□ -1.21
HMGB1-202ENST00000339872 H3BPC8 53 aa7.46□□□□□ -1.22
HMGB1-202ENST00000339872 Q8N9P0 234 aaPredicted RBP7.45□□□□□ -1.22
HMGB1-202ENST00000339872 C1orf64Q8NEQ6 169 aa7.45□□□□□ -1.22
HMGB1-202ENST00000339872 FAM236DA0A1B0GTK5 79 aa7.43□□□□□ -1.22
HMGB1-202ENST00000339872 FAM236CP0DP71 79 aa7.43□□□□□ -1.22
HMGB1-202ENST00000339872 FAT3Q8TDW7 4589 aa7.43□□□□□ -1.22
HMGB1-202ENST00000339872 Q5W150 140 aa7.42□□□□□ -1.22
HMGB1-202ENST00000339872 C9orf92A6NGG3 77 aa7.41□□□□□ -1.22
HMGB1-202ENST00000339872 MT1HL1P0DM35 61 aa7.41□□□□□ -1.22
HMGB1-202ENST00000339872 KRTAP4-5Q9BYR2 181 aa7.4□□□□□ -1.22
HMGB1-202ENST00000339872 KRTAP13-3Q3SY46 172 aa7.39□□□□□ -1.23
HMGB1-202ENST00000339872 MYCBP2O75592 4640 aa7.39□□□□□ -1.23
HMGB1-202ENST00000339872 ATP5EP56381 51 aaPredicted RBP7.35□□□□□ -1.23
HMGB1-202ENST00000339872 OXTP01178 125 aa7.35□□□□□ -1.23
HMGB1-202ENST00000339872 LOC101927531A0A1B0GV80 90 aa7.34□□□□□ -1.23
HMGB1-202ENST00000339872 PCOTHQ58A44 107 aa7.34□□□□□ -1.23
HMGB1-202ENST00000339872 DMBT1Q9UGM3 2413 aaPredicted RBP7.34□□□□□ -1.24
HMGB1-202ENST00000339872 FP248Q71RG6 208 aaPredicted RBP7.32□□□□□ -1.24
HMGB1-202ENST00000339872 PRR4Q16378 134 aa7.31□□□□□ -1.24
HMGB1-202ENST00000339872 C20orf166-AS1Q96NR2 134 aa7.3□□□□□ -1.24
HMGB1-202ENST00000339872 A8MUU9 505 aa7.29□□□□□ -1.24
HMGB1-202ENST00000339872 CYP4F30PQ9H0H9 118 aa7.29□□□□□ -1.24
HMGB1-202ENST00000339872 IGLV7-46A0A075B6I9 117 aa7.28□□□□□ -1.24
HMGB1-202ENST00000339872 SPANXA2-OT1Q8N9U9 137 aa7.28□□□□□ -1.24
HMGB1-202ENST00000339872 SERP1Q9Y6X1 66 aa7.27□□□□□ -1.25
HMGB1-202ENST00000339872 IGKV2-30P06310 120 aa7.27□□□□□ -1.25
HMGB1-202ENST00000339872 RPS28P62857 69 aaKnown RBP7.26□□□□□ -1.25
HMGB1-202ENST00000339872 BIRC6Q9NR09 4857 aa7.25□□□□□ -1.25
HMGB1-202ENST00000339872 IGKV2D-30A0A075B6S6 120 aa7.25□□□□□ -1.25
HMGB1-202ENST00000339872 Q75L30 129 aa7.22□□□□□ -1.25
HMGB1-202ENST00000339872 ABCA13Q86UQ4 5058 aa7.2□□□□□ -1.26
HMGB1-202ENST00000339872 HERC2O95714 4834 aa7.19□□□□□ -1.26
HMGB1-202ENST00000339872 HRES1P13985 223 aa7.18□□□□□ -1.26
HMGB1-202ENST00000339872 C7orf65Q6ZTY9 151 aa7.18□□□□□ -1.26
HMGB1-202ENST00000339872 J3QL48 77 aa7.18□□□□□ -1.26
HMGB1-202ENST00000339872 XP32Q5T750 250 aa7.18□□□□□ -1.26
HMGB1-202ENST00000339872 RPL37P61927 97 aaKnown RBP7.14□□□□□ -1.27
HMGB1-202ENST00000339872 ATP11AUNQ6ZP68 121 aa7.13□□□□□ -1.27
HMGB1-202ENST00000339872 TPRXLQ17RH7 258 aa7.12□□□□□ -1.27
HMGB1-202ENST00000339872 COA5Q86WW8 74 aa7.1□□□□□ -1.27
HMGB1-202ENST00000339872 SPINK7P58062 85 aa7.09□□□□□ -1.27
HMGB1-202ENST00000339872 SMIM26A0A096LP01 95 aa7.09□□□□□ -1.28
HMGB1-202ENST00000339872 DMAC1Q96GE9 116 aa7.09□□□□□ -1.28
HMGB1-202ENST00000339872 ACYP2P14621 99 aa7.05□□□□□ -1.28
HMGB1-202ENST00000339872 C4orf26Q17RF5 130 aa7.05□□□□□ -1.28
HMGB1-202ENST00000339872 MPLKIPQ8TAP9 179 aa7.01□□□□□ -1.29
HMGB1-202ENST00000339872 LPAP08519 4548 aa7□□□□□ -1.29
HMGB1-202ENST00000339872 CHKB-CPT1BH3BT56 60 aa6.97□□□□□ -1.29
HMGB1-202ENST00000339872 A8MUN3 132 aa6.96□□□□□ -1.3
HMGB1-202ENST00000339872 LRP2P98164 4655 aa6.95□□□□□ -1.3
HMGB1-202ENST00000339872 PCLOQ9Y6V0 5065 aa6.94□□□□□ -1.3
HMGB1-202ENST00000339872 Q1T7F1 81 aa6.93□□□□□ -1.3
HMGB1-202ENST00000339872 KRTAP3-1Q9BYR8 98 aa6.93□□□□□ -1.3
HMGB1-202ENST00000339872 COX6B2Q6YFQ2 88 aa6.92□□□□□ -1.3
HMGB1-202ENST00000339872 V9GYY9 64 aa6.89□□□□□ -1.31
HMGB1-202ENST00000339872 SEC61BP60468 96 aaKnown RBP6.87□□□□□ -1.31
HMGB1-202ENST00000339872 PSPHP1O15172 72 aa6.85□□□□□ -1.31
HMGB1-202ENST00000339872 PRR15LQ9BU68 103 aa6.82□□□□□ -1.32
HMGB1-202ENST00000339872 LINC01558Q9Y6Z2 57 aa6.82□□□□□ -1.32
HMGB1-202ENST00000339872 HERC1Q15751 4861 aa6.78□□□□□ -1.32
HMGB1-202ENST00000339872 SPTSSBQ8NFR3 76 aa6.77□□□□□ -1.33
HMGB1-202ENST00000339872 RBM12B-AS1Q9P1G2 102 aa6.77□□□□□ -1.33
HMGB1-202ENST00000339872 Q5VV11 94 aa6.76□□□□□ -1.33
HMGB1-202ENST00000339872 KRTAP4-1Q9BYQ7 146 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms