RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 KRTAP29-1A8MX34 341 aaPredicted RBP12.98□□□□□ -0.33
PDLIM2-203ENST00000339162 IGHV6-1A0A0B4J1U7 121 aa12.97□□□□□ -0.33
PDLIM2-203ENST00000339162 MMP24-AS1A0A0U1RRL7 71 aa12.96□□□□□ -0.33
PDLIM2-203ENST00000339162 C4orf26Q17RF5 130 aa12.96□□□□□ -0.33
PDLIM2-203ENST00000339162 CDK2AP2O75956 126 aa12.96□□□□□ -0.34
PDLIM2-203ENST00000339162 ATP5EP56381 51 aaPredicted RBP12.96□□□□□ -0.34
PDLIM2-203ENST00000339162 A0A0U1RQV1 116 aa12.93□□□□□ -0.34
PDLIM2-203ENST00000339162 A0A1B0GVX0 72 aa12.93□□□□□ -0.34
PDLIM2-203ENST00000339162 NOTCH2NLQ7Z3S9 236 aa12.91□□□□□ -0.34
PDLIM2-203ENST00000339162 C8orf17Q9NRJ1 99 aa12.9□□□□□ -0.34
PDLIM2-203ENST00000339162 hDV103S1A0JD37 113 aa12.89□□□□□ -0.35
PDLIM2-203ENST00000339162 C4orf48Q5BLP8 95 aa12.89□□□□□ -0.35
PDLIM2-203ENST00000339162 ASB16-AS1Q495Z4 193 aa12.88□□□□□ -0.35
PDLIM2-203ENST00000339162 PRO0628Q9UI54 55 aa12.88□□□□□ -0.35
PDLIM2-203ENST00000339162 C1orf195Q5TG92 126 aa12.86□□□□□ -0.35
PDLIM2-203ENST00000339162 SMIM26A0A096LP01 95 aa12.85□□□□□ -0.35
PDLIM2-203ENST00000339162 HSPG2P98160 4391 aa12.84□□□□□ -0.35
PDLIM2-203ENST00000339162 FAM229AH3BQW9 127 aa12.83□□□□□ -0.36
PDLIM2-203ENST00000339162 LINC00304Q8N9R0 145 aa12.82□□□□□ -0.36
PDLIM2-203ENST00000339162 LIMD2Q9BT23 127 aa12.82□□□□□ -0.36
PDLIM2-203ENST00000339162 SPINK1P00995 79 aa12.81□□□□□ -0.36
PDLIM2-203ENST00000339162 FP248Q71RG6 208 aaPredicted RBP12.79□□□□□ -0.36
PDLIM2-203ENST00000339162 Q5VSD8 79 aa12.78□□□□□ -0.36
PDLIM2-203ENST00000339162 KRTAP17-1Q9BYP8 105 aa12.76□□□□□ -0.37
PDLIM2-203ENST00000339162 NDUFS5O43920 106 aa12.74□□□□□ -0.37
PDLIM2-203ENST00000339162 MRPL34Q9BQ48 92 aaKnown RBP12.74□□□□□ -0.37
PDLIM2-203ENST00000339162 RYR1P21817 5038 aa12.73□□□□□ -0.37
PDLIM2-203ENST00000339162 EPPK1P58107 5090 aaKnown RBP12.73□□□□□ -0.37
PDLIM2-203ENST00000339162 KIAA1109Q2LD37 5005 aa12.72□□□□□ -0.37
PDLIM2-203ENST00000339162 ZCCHC13Q8WW36 166 aaKnown RBP12.7□□□□□ -0.38
PDLIM2-203ENST00000339162 H0Y9P7 68 aa12.69□□□□□ -0.38
PDLIM2-203ENST00000339162 SPAG11AQ6PDA7 123 aa12.69□□□□□ -0.38
PDLIM2-203ENST00000339162 MP68P56378 58 aa12.68□□□□□ -0.38
PDLIM2-203ENST00000339162 LINC00313P59037 77 aa12.68□□□□□ -0.38
PDLIM2-203ENST00000339162 LINC00208Q96KT6 92 aa12.67□□□□□ -0.38
PDLIM2-203ENST00000339162 PKHD1L1Q86WI1 4243 aa12.67□□□□□ -0.38
PDLIM2-203ENST00000339162 LRP1Q07954 4544 aaKnown RBP12.67□□□□□ -0.38
PDLIM2-203ENST00000339162 C8orf87E5RJ46 101 aa12.65□□□□□ -0.38
PDLIM2-203ENST00000339162 TRAV22A0A0B4J277 110 aa12.63□□□□□ -0.39
PDLIM2-203ENST00000339162 RPS29P62273 56 aaKnown RBP12.63□□□□□ -0.39
PDLIM2-203ENST00000339162 TP53AIP1Q9HCN2 124 aa12.62□□□□□ -0.39
PDLIM2-203ENST00000339162 FLG2Q5D862 2391 aaPredicted RBP12.57□□□□□ -0.4
PDLIM2-203ENST00000339162 C1orf64Q8NEQ6 169 aa12.57□□□□□ -0.4
PDLIM2-203ENST00000339162 RETNLBQ9BQ08 111 aa12.56□□□□□ -0.4
PDLIM2-203ENST00000339162 Q8N1X5 172 aa12.55□□□□□ -0.4
PDLIM2-203ENST00000339162 KRTAP16-1A8MUX0 517 aa12.54□□□□□ -0.4
PDLIM2-203ENST00000339162 Q5W150 140 aa12.54□□□□□ -0.4
PDLIM2-203ENST00000339162 V9GYY9 64 aa12.52□□□□□ -0.41
PDLIM2-203ENST00000339162 MPLKIPQ8TAP9 179 aa12.52□□□□□ -0.41
PDLIM2-203ENST00000339162 CYP4F30PQ9H0H9 118 aa12.51□□□□□ -0.41
PDLIM2-203ENST00000339162 H3BPC8 53 aa12.5□□□□□ -0.41
PDLIM2-203ENST00000339162 KRTAP10-8P60410 259 aa12.5□□□□□ -0.41
PDLIM2-203ENST00000339162 TNXBP22105 4242 aa12.5□□□□□ -0.41
PDLIM2-203ENST00000339162 Q8N9P0 234 aaPredicted RBP12.49□□□□□ -0.41
PDLIM2-203ENST00000339162 MYCBP2O75592 4640 aa12.46□□□□□ -0.42
PDLIM2-203ENST00000339162 SEC61GP60059 68 aa12.45□□□□□ -0.42
PDLIM2-203ENST00000339162 PRR4Q16378 134 aa12.45□□□□□ -0.42
PDLIM2-203ENST00000339162 KRTAP13-3Q3SY46 172 aa12.43□□□□□ -0.42
PDLIM2-203ENST00000339162 C9orf92A6NGG3 77 aa12.43□□□□□ -0.42
PDLIM2-203ENST00000339162 FAT3Q8TDW7 4589 aa12.42□□□□□ -0.42
PDLIM2-203ENST00000339162 PCOTHQ58A44 107 aa12.42□□□□□ -0.42
PDLIM2-203ENST00000339162 Q1T7F1 81 aa12.4□□□□□ -0.42
PDLIM2-203ENST00000339162 DMBT1Q9UGM3 2413 aaPredicted RBP12.39□□□□□ -0.43
PDLIM2-203ENST00000339162 BRK1Q8WUW1 75 aa12.37□□□□□ -0.43
PDLIM2-203ENST00000339162 SPANXA2-OT1Q8N9U9 137 aa12.36□□□□□ -0.43
PDLIM2-203ENST00000339162 KRTAP4-5Q9BYR2 181 aa12.33□□□□□ -0.44
PDLIM2-203ENST00000339162 MT1HL1P0DM35 61 aa12.31□□□□□ -0.44
PDLIM2-203ENST00000339162 LOC101927531A0A1B0GV80 90 aa12.3□□□□□ -0.44
PDLIM2-203ENST00000339162 IGLV7-46A0A075B6I9 117 aa12.21□□□□□ -0.46
PDLIM2-203ENST00000339162 IGKV2-30P06310 120 aa12.2□□□□□ -0.46
PDLIM2-203ENST00000339162 IGKV2D-30A0A075B6S6 120 aa12.19□□□□□ -0.46
PDLIM2-203ENST00000339162 C20orf166-AS1Q96NR2 134 aa12.18□□□□□ -0.46
PDLIM2-203ENST00000339162 A8MUU9 505 aa12.17□□□□□ -0.46
PDLIM2-203ENST00000339162 PSPHP1O15172 72 aa12.17□□□□□ -0.46
PDLIM2-203ENST00000339162 PMAIP1Q13794 54 aa12.14□□□□□ -0.47
PDLIM2-203ENST00000339162 HRES1P13985 223 aa12.12□□□□□ -0.47
PDLIM2-203ENST00000339162 A8MUN3 132 aa12.09□□□□□ -0.47
PDLIM2-203ENST00000339162 ABCA13Q86UQ4 5058 aa12.05□□□□□ -0.48
PDLIM2-203ENST00000339162 COA5Q86WW8 74 aa12.05□□□□□ -0.48
PDLIM2-203ENST00000339162 Q5VV11 94 aa12.04□□□□□ -0.48
PDLIM2-203ENST00000339162 Q75L30 129 aa12.03□□□□□ -0.48
PDLIM2-203ENST00000339162 C7orf65Q6ZTY9 151 aa12.01□□□□□ -0.49
PDLIM2-203ENST00000339162 BIRC6Q9NR09 4857 aa11.98□□□□□ -0.49
PDLIM2-203ENST00000339162 XP32Q5T750 250 aa11.96□□□□□ -0.49
PDLIM2-203ENST00000339162 PRR15LQ9BU68 103 aa11.94□□□□□ -0.5
PDLIM2-203ENST00000339162 HERC2O95714 4834 aa11.92□□□□□ -0.5
PDLIM2-203ENST00000339162 CHKB-CPT1BH3BT56 60 aa11.91□□□□□ -0.5
PDLIM2-203ENST00000339162 DMAC1Q96GE9 116 aa11.91□□□□□ -0.5
PDLIM2-203ENST00000339162 SPINK7P58062 85 aa11.9□□□□□ -0.5
PDLIM2-203ENST00000339162 ATP11AUNQ6ZP68 121 aa11.9□□□□□ -0.51
PDLIM2-203ENST00000339162 RPL37P61927 97 aaKnown RBP11.89□□□□□ -0.51
PDLIM2-203ENST00000339162 ACYP2P14621 99 aa11.87□□□□□ -0.51
PDLIM2-203ENST00000339162 J3QL48 77 aa11.84□□□□□ -0.51
PDLIM2-203ENST00000339162 LINC01558Q9Y6Z2 57 aa11.84□□□□□ -0.51
PDLIM2-203ENST00000339162 A8MU10 97 aa11.82□□□□□ -0.52
PDLIM2-203ENST00000339162 LPAP08519 4548 aa11.81□□□□□ -0.52
PDLIM2-203ENST00000339162 TPRXLQ17RH7 258 aa11.78□□□□□ -0.52
PDLIM2-203ENST00000339162 LRP2P98164 4655 aa11.75□□□□□ -0.53
PDLIM2-203ENST00000339162 A6NED7 52 aa11.74□□□□□ -0.53
PDLIM2-203ENST00000339162 LCA10Q71F78 164 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms