RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SSBP3-AS1Q7Z2R9 100 aa2.41□□□□□ -2.02
MCF2-201ENST00000338585 DSCR10P59022 87 aa2.41□□□□□ -2.02
MCF2-201ENST00000338585 SEC61GP60059 68 aa2.41□□□□□ -2.02
MCF2-201ENST00000338585 CXCL6P80162 114 aa2.41□□□□□ -2.02
MCF2-201ENST00000338585 FAM236AA0A1B0GUQ0 79 aa2.41□□□□□ -2.02
MCF2-201ENST00000338585 FAM236BA0A1B0GV22 79 aa2.41□□□□□ -2.02
MCF2-201ENST00000338585 IMUPQ9GZP8 106 aa2.41□□□□□ -2.02
MCF2-201ENST00000338585 TYMSOSQ8TAI1 123 aa2.4□□□□□ -2.03
MCF2-201ENST00000338585 Q96NJ1 140 aa2.4□□□□□ -2.03
MCF2-201ENST00000338585 LINC00472Q9H8W2 130 aa2.4□□□□□ -2.03
MCF2-201ENST00000338585 K7EQZ3 153 aa2.4□□□□□ -2.03
MCF2-201ENST00000338585 IGKV4-1P06312 121 aa2.4□□□□□ -2.03
MCF2-201ENST00000338585 SCGB1A1P11684 91 aa2.39□□□□□ -2.03
MCF2-201ENST00000338585 CD164Q04900 197 aa2.39□□□□□ -2.03
MCF2-201ENST00000338585 PKHD1L1Q86WI1 4243 aa2.38□□□□□ -2.03
MCF2-201ENST00000338585 Q8N1X5 172 aa2.38□□□□□ -2.03
MCF2-201ENST00000338585 SS18L2Q9UHA2 77 aa2.38□□□□□ -2.03
MCF2-201ENST00000338585 FLG2Q5D862 2391 aaPredicted RBP2.38□□□□□ -2.03
MCF2-201ENST00000338585 LINC00304Q8N9R0 145 aa2.37□□□□□ -2.03
MCF2-201ENST00000338585 A8MWP4 228 aa2.36□□□□□ -2.03
MCF2-201ENST00000338585 J3KT08 172 aa2.36□□□□□ -2.03
MCF2-201ENST00000338585 C1orf195Q5TG92 126 aa2.36□□□□□ -2.03
MCF2-201ENST00000338585 PRR15Q8IV56 129 aa2.36□□□□□ -2.03
MCF2-201ENST00000338585 ANAPC13Q9BS18 74 aa2.36□□□□□ -2.03
MCF2-201ENST00000338585 LRP1Q07954 4544 aaKnown RBP2.36□□□□□ -2.03
MCF2-201ENST00000338585 SPINK1P00995 79 aa2.36□□□□□ -2.03
MCF2-201ENST00000338585 Q5XG85 94 aa2.36□□□□□ -2.03
MCF2-201ENST00000338585 WFDC13Q8IUB5 93 aa2.36□□□□□ -2.03
MCF2-201ENST00000338585 IGHV6-1A0A0B4J1U7 121 aa2.35□□□□□ -2.03
MCF2-201ENST00000338585 HCG22E2RYF7 251 aa2.35□□□□□ -2.03
MCF2-201ENST00000338585 ASB16-AS1Q495Z4 193 aa2.35□□□□□ -2.03
MCF2-201ENST00000338585 NOTCH2NLQ7Z3S9 236 aa2.35□□□□□ -2.03
MCF2-201ENST00000338585 MMP24-AS1A0A0U1RRL7 71 aa2.35□□□□□ -2.03
MCF2-201ENST00000338585 A0A1B0GVX0 72 aa2.35□□□□□ -2.03
MCF2-201ENST00000338585 ATOX1O00244 68 aa2.35□□□□□ -2.03
MCF2-201ENST00000338585 KRTAP10-8P60410 259 aa2.35□□□□□ -2.03
MCF2-201ENST00000338585 LIMD2Q9BT23 127 aa2.35□□□□□ -2.03
MCF2-201ENST00000338585 BIRC6Q9NR09 4857 aa2.35□□□□□ -2.03
MCF2-201ENST00000338585 NDUFB1O75438 58 aa2.34□□□□□ -2.03
MCF2-201ENST00000338585 SPAG11AQ6PDA7 123 aa2.34□□□□□ -2.03
MCF2-201ENST00000338585 KRTAP29-1A8MX34 341 aaPredicted RBP2.34□□□□□ -2.04
MCF2-201ENST00000338585 CASC2Q6XLA1 102 aa2.34□□□□□ -2.04
MCF2-201ENST00000338585 RETNLBQ9BQ08 111 aa2.34□□□□□ -2.04
MCF2-201ENST00000338585 C8orf17Q9NRJ1 99 aa2.34□□□□□ -2.04
MCF2-201ENST00000338585 TNXBP22105 4242 aa2.34□□□□□ -2.04
MCF2-201ENST00000338585 CCDC179H3BU77 68 aa2.33□□□□□ -2.04
MCF2-201ENST00000338585 MT1HL1P0DM35 61 aa2.33□□□□□ -2.04
MCF2-201ENST00000338585 ABCA13Q86UQ4 5058 aa2.33□□□□□ -2.04
MCF2-201ENST00000338585 MYCBP2O75592 4640 aa2.33□□□□□ -2.04
MCF2-201ENST00000338585 RPS29P62273 56 aaKnown RBP2.33□□□□□ -2.04
MCF2-201ENST00000338585 DMBT1Q9UGM3 2413 aaPredicted RBP2.33□□□□□ -2.04
MCF2-201ENST00000338585 FAT3Q8TDW7 4589 aa2.32□□□□□ -2.04
MCF2-201ENST00000338585 SERP2Q8N6R1 65 aa2.32□□□□□ -2.04
MCF2-201ENST00000338585 OCR1Q9BZK8 76 aa2.32□□□□□ -2.04
MCF2-201ENST00000338585 hDV103S1A0JD37 113 aa2.32□□□□□ -2.04
MCF2-201ENST00000338585 TRAV7A0A075B6U4 112 aa2.32□□□□□ -2.04
MCF2-201ENST00000338585 COX7CP15954 63 aa2.32□□□□□ -2.04
MCF2-201ENST00000338585 HERC2O95714 4834 aa2.31□□□□□ -2.04
MCF2-201ENST00000338585 CYSTM1Q9H1C7 97 aa2.31□□□□□ -2.04
MCF2-201ENST00000338585 UQCRQO14949 82 aa2.3□□□□□ -2.04
MCF2-201ENST00000338585 LINC00313P59037 77 aa2.3□□□□□ -2.04
MCF2-201ENST00000338585 SMIM20Q8N5G0 67 aa2.3□□□□□ -2.04
MCF2-201ENST00000338585 MRPL34Q9BQ48 92 aaKnown RBP2.3□□□□□ -2.04
MCF2-201ENST00000338585 KRTAP16-1A8MUX0 517 aa2.3□□□□□ -2.04
MCF2-201ENST00000338585 C20orf197Q8N268 126 aa2.3□□□□□ -2.04
MCF2-201ENST00000338585 TMEM254Q8TBM7 123 aa2.3□□□□□ -2.04
MCF2-201ENST00000338585 C9orf92A6NGG3 77 aa2.29□□□□□ -2.04
MCF2-201ENST00000338585 C8orf87E5RJ46 101 aa2.29□□□□□ -2.04
MCF2-201ENST00000338585 NDUFS5O43920 106 aa2.29□□□□□ -2.04
MCF2-201ENST00000338585 OXTP01178 125 aa2.29□□□□□ -2.04
MCF2-201ENST00000338585 SNURFQ9Y675 71 aa2.29□□□□□ -2.04
MCF2-201ENST00000338585 PCLOQ9Y6V0 5065 aa2.29□□□□□ -2.04
MCF2-201ENST00000338585 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.28□□□□□ -2.04
MCF2-201ENST00000338585 Q75L30 129 aa2.28□□□□□ -2.04
MCF2-201ENST00000338585 HMCN1Q96RW7 5635 aa2.28□□□□□ -2.04
MCF2-201ENST00000338585 A0A0U1RQV1 116 aa2.27□□□□□ -2.05
MCF2-201ENST00000338585 Q5W150 140 aa2.27□□□□□ -2.05
MCF2-201ENST00000338585 Q8N9P0 234 aaPredicted RBP2.27□□□□□ -2.05
MCF2-201ENST00000338585 H0Y9P7 68 aa2.27□□□□□ -2.05
MCF2-201ENST00000338585 TRAV22A0A0B4J277 110 aa2.26□□□□□ -2.05
MCF2-201ENST00000338585 KLKP1Q107X0 134 aa2.26□□□□□ -2.05
MCF2-201ENST00000338585 C5orf47Q569G3 176 aa2.26□□□□□ -2.05
MCF2-201ENST00000338585 TP53AIP1Q9HCN2 124 aa2.26□□□□□ -2.05
MCF2-201ENST00000338585 IGLV7-46A0A075B6I9 117 aa2.26□□□□□ -2.05
MCF2-201ENST00000338585 ZCCHC13Q8WW36 166 aaKnown RBP2.26□□□□□ -2.05
MCF2-201ENST00000338585 LINC00208Q96KT6 92 aa2.26□□□□□ -2.05
MCF2-201ENST00000338585 MP68P56378 58 aa2.25□□□□□ -2.05
MCF2-201ENST00000338585 PRR4Q16378 134 aa2.25□□□□□ -2.05
MCF2-201ENST00000338585 KRTAP13-3Q3SY46 172 aa2.25□□□□□ -2.05
MCF2-201ENST00000338585 FP248Q71RG6 208 aaPredicted RBP2.25□□□□□ -2.05
MCF2-201ENST00000338585 H7BZZ5 65 aa2.25□□□□□ -2.05
MCF2-201ENST00000338585 C1orf64Q8NEQ6 169 aa2.24□□□□□ -2.05
MCF2-201ENST00000338585 SEC61BP60468 96 aaKnown RBP2.24□□□□□ -2.05
MCF2-201ENST00000338585 A8MUU9 505 aa2.23□□□□□ -2.05
MCF2-201ENST00000338585 C20orf166-AS1Q96NR2 134 aa2.23□□□□□ -2.05
MCF2-201ENST00000338585 PCOTHQ58A44 107 aa2.23□□□□□ -2.05
MCF2-201ENST00000338585 H3BPC8 53 aa2.22□□□□□ -2.05
MCF2-201ENST00000338585 V9GYY9 64 aa2.22□□□□□ -2.05
MCF2-201ENST00000338585 IGKV2D-30A0A075B6S6 120 aa2.21□□□□□ -2.06
MCF2-201ENST00000338585 NDUFC1O43677 76 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms