RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 LINC01558Q9Y6Z2 57 aa8.34□□□□□ -1.07
SYNE3-201ENST00000334258 HRES1P13985 223 aa8.32□□□□□ -1.08
SYNE3-201ENST00000334258 A0A1B0GVX0 72 aa8.3□□□□□ -1.08
SYNE3-201ENST00000334258 Q96NJ1 140 aa8.3□□□□□ -1.08
SYNE3-201ENST00000334258 Q6ZR54 194 aa8.29□□□□□ -1.08
SYNE3-201ENST00000334258 APLNQ9ULZ1 77 aa8.29□□□□□ -1.08
SYNE3-201ENST00000334258 MRPL34Q9BQ48 92 aaKnown RBP8.28□□□□□ -1.08
SYNE3-201ENST00000334258 PANO1I0J062 215 aa8.28□□□□□ -1.08
SYNE3-201ENST00000334258 SPINK6Q6UWN8 80 aa8.27□□□□□ -1.09
SYNE3-201ENST00000334258 ANAPC11Q9NYG5 84 aa8.26□□□□□ -1.09
SYNE3-201ENST00000334258 ASB16-AS1Q495Z4 193 aa8.25□□□□□ -1.09
SYNE3-201ENST00000334258 A0A087X002 238 aa8.25□□□□□ -1.09
SYNE3-201ENST00000334258 NOTCH2NLQ7Z3S9 236 aa8.25□□□□□ -1.09
SYNE3-201ENST00000334258 RETNLBQ9BQ08 111 aa8.25□□□□□ -1.09
SYNE3-201ENST00000334258 PLAC8Q9NZF1 115 aa8.23□□□□□ -1.09
SYNE3-201ENST00000334258 ZNF706Q9Y5V0 76 aaPredicted RBP8.23□□□□□ -1.09
SYNE3-201ENST00000334258 KRTAP13-1Q8IUC0 172 aa8.22□□□□□ -1.09
SYNE3-201ENST00000334258 VPS13DQ5THJ4 4388 aa8.21□□□□□ -1.09
SYNE3-201ENST00000334258 DNAH2Q9P225 4427 aa8.2□□□□□ -1.1
SYNE3-201ENST00000334258 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.19□□□□□ -1.1
SYNE3-201ENST00000334258 PLA2G1BP04054 148 aaKnown RBP8.18□□□□□ -1.1
SYNE3-201ENST00000334258 LY6G6CO95867 125 aa8.18□□□□□ -1.1
SYNE3-201ENST00000334258 CSAG1Q6PB30 78 aa8.18□□□□□ -1.1
SYNE3-201ENST00000334258 Q5W150 140 aa8.17□□□□□ -1.1
SYNE3-201ENST00000334258 NBDYA0A0U1RRE5 68 aa8.16□□□□□ -1.1
SYNE3-201ENST00000334258 ACYP2P14621 99 aa8.16□□□□□ -1.1
SYNE3-201ENST00000334258 WWC2-AS2Q96NR7 200 aa8.16□□□□□ -1.1
SYNE3-201ENST00000334258 NUPR2A6NF83 97 aa8.15□□□□□ -1.11
SYNE3-201ENST00000334258 LINC00483Q53H64 154 aa8.13□□□□□ -1.11
SYNE3-201ENST00000334258 CIRBP-AS1Q8TBR5 109 aa8.12□□□□□ -1.11
SYNE3-201ENST00000334258 PSORS1C2Q9UIG4 136 aa8.12□□□□□ -1.11
SYNE3-201ENST00000334258 HYDINQ4G0P3 5121 aa8.12□□□□□ -1.11
SYNE3-201ENST00000334258 SPACA4Q8TDM5 124 aa8.12□□□□□ -1.11
SYNE3-201ENST00000334258 DYNC2H1Q8NCM8 4307 aaKnown RBP8.11□□□□□ -1.11
SYNE3-201ENST00000334258 FRAS1Q86XX4 4008 aa8.11□□□□□ -1.11
SYNE3-201ENST00000334258 DNAH6Q9C0G6 4158 aa8.11□□□□□ -1.11
SYNE3-201ENST00000334258 A0A1B0GU69 56 aa8.09□□□□□ -1.11
SYNE3-201ENST00000334258 ZNF861PO60384 105 aa8.07□□□□□ -1.12
SYNE3-201ENST00000334258 C1orf134Q5TEV5 83 aa8.07□□□□□ -1.12
SYNE3-201ENST00000334258 IGLV5-52A0A0A0MRZ9 124 aa8.07□□□□□ -1.12
SYNE3-201ENST00000334258 RTL8CO15255 209 aa8.07□□□□□ -1.12
SYNE3-201ENST00000334258 HECTD4Q9Y4D8 3996 aa8.05□□□□□ -1.12
SYNE3-201ENST00000334258 Q6ZRN7 208 aaPredicted RBP8.04□□□□□ -1.12
SYNE3-201ENST00000334258 DNAH11Q96DT5 4516 aa8.03□□□□□ -1.12
SYNE3-201ENST00000334258 KRTAP13-3Q3SY46 172 aa8.02□□□□□ -1.13
SYNE3-201ENST00000334258 DMAC1Q96GE9 116 aa8.01□□□□□ -1.13
SYNE3-201ENST00000334258 A0A087WTM6 91 aa8.01□□□□□ -1.13
SYNE3-201ENST00000334258 FAM229AH3BQW9 127 aa7.98□□□□□ -1.13
SYNE3-201ENST00000334258 MIR22HGQ0VDD5 57 aa7.97□□□□□ -1.13
SYNE3-201ENST00000334258 DNAH17Q9UFH2 4485 aa7.97□□□□□ -1.13
SYNE3-201ENST00000334258 UQCR11O14957 56 aa7.96□□□□□ -1.14
SYNE3-201ENST00000334258 IGKV2D-30A0A075B6S6 120 aa7.95□□□□□ -1.14
SYNE3-201ENST00000334258 IGKV2-30P06310 120 aa7.95□□□□□ -1.14
SYNE3-201ENST00000334258 IGLV7-43P04211 117 aa7.93□□□□□ -1.14
SYNE3-201ENST00000334258 SPATA8Q6RVD6 105 aa7.93□□□□□ -1.14
SYNE3-201ENST00000334258 KRTAP10-2P60368 255 aa7.93□□□□□ -1.14
SYNE3-201ENST00000334258 PKHD1P08F94 4074 aa7.93□□□□□ -1.14
SYNE3-201ENST00000334258 DNAH8Q96JB1 4490 aa7.93□□□□□ -1.14
SYNE3-201ENST00000334258 SSBP3-AS1Q7Z2R9 100 aa7.9□□□□□ -1.14
SYNE3-201ENST00000334258 DNAH5Q8TE73 4624 aa7.89□□□□□ -1.15
SYNE3-201ENST00000334258 ROMO1P60602 79 aa7.89□□□□□ -1.15
SYNE3-201ENST00000334258 KMT2CQ8NEZ4 4911 aaKnown RBP7.89□□□□□ -1.15
SYNE3-201ENST00000334258 FLG2Q5D862 2391 aaPredicted RBP7.89□□□□□ -1.15
SYNE3-201ENST00000334258 SPINK1P00995 79 aa7.88□□□□□ -1.15
SYNE3-201ENST00000334258 LRP1BQ9NZR2 4599 aa7.87□□□□□ -1.15
SYNE3-201ENST00000334258 SACSQ9NZJ4 4579 aa7.84□□□□□ -1.15
SYNE3-201ENST00000334258 FAT2Q9NYQ8 4349 aa7.84□□□□□ -1.16
SYNE3-201ENST00000334258 A0A0A0MQY5 61 aa7.79□□□□□ -1.16
SYNE3-201ENST00000334258 PKD1P98161 4303 aa7.77□□□□□ -1.17
SYNE3-201ENST00000334258 KRTAP10-1P60331 282 aa7.77□□□□□ -1.17
SYNE3-201ENST00000334258 Q8N1X5 172 aa7.77□□□□□ -1.17
SYNE3-201ENST00000334258 P0C880 135 aa7.75□□□□□ -1.17
SYNE3-201ENST00000334258 KRTAP13-2Q52LG2 175 aa7.75□□□□□ -1.17
SYNE3-201ENST00000334258 CRIPTQ9P021 101 aa7.75□□□□□ -1.17
SYNE3-201ENST00000334258 FAT1Q14517 4588 aa7.75□□□□□ -1.17
SYNE3-201ENST00000334258 ALMS1Q8TCU4 4167 aa7.74□□□□□ -1.17
SYNE3-201ENST00000334258 KRTAP16-1A8MUX0 517 aa7.74□□□□□ -1.17
SYNE3-201ENST00000334258 VPS13BQ7Z7G8 4022 aa7.73□□□□□ -1.17
SYNE3-201ENST00000334258 SMR3BP02814 79 aaPredicted RBP7.72□□□□□ -1.17
SYNE3-201ENST00000334258 KRTAP25-1Q3LHN0 102 aa7.72□□□□□ -1.17
SYNE3-201ENST00000334258 KRTAP21-3Q3LHN1 58 aa7.71□□□□□ -1.18
SYNE3-201ENST00000334258 A8MUU9 505 aa7.65□□□□□ -1.18
SYNE3-201ENST00000334258 DYNC1H1Q14204 4646 aaKnown RBP7.64□□□□□ -1.19
SYNE3-201ENST00000334258 RYR3Q15413 4870 aa7.61□□□□□ -1.19
SYNE3-201ENST00000334258 TYMSOSQ8TAI1 123 aa7.61□□□□□ -1.19
SYNE3-201ENST00000334258 Q6ZSA8 131 aa7.59□□□□□ -1.19
SYNE3-201ENST00000334258 RYR2Q92736 4967 aa7.58□□□□□ -1.2
SYNE3-201ENST00000334258 H0YAA0 97 aa7.57□□□□□ -1.2
SYNE3-201ENST00000334258 KRTAP1-4P0C5Y4 121 aa7.56□□□□□ -1.2
SYNE3-201ENST00000334258 A0A1B0GU33 70 aa7.55□□□□□ -1.2
SYNE3-201ENST00000334258 NDUFAF8A1L188 74 aa7.55□□□□□ -1.2
SYNE3-201ENST00000334258 LINC00304Q8N9R0 145 aa7.55□□□□□ -1.2
SYNE3-201ENST00000334258 APOBP04114 4563 aaKnown RBP7.52□□□□□ -1.21
SYNE3-201ENST00000334258 C9orf92A6NGG3 77 aa7.5□□□□□ -1.21
SYNE3-201ENST00000334258 SPINT4Q6UDR6 99 aa7.49□□□□□ -1.21
SYNE3-201ENST00000334258 DMBT1Q9UGM3 2413 aaPredicted RBP7.49□□□□□ -1.21
SYNE3-201ENST00000334258 LRP1Q07954 4544 aaKnown RBP7.46□□□□□ -1.21
SYNE3-201ENST00000334258 K7ERS5 55 aa7.46□□□□□ -1.22
SYNE3-201ENST00000334258 H1FX-AS1Q4G0G2 97 aa7.46□□□□□ -1.22
SYNE3-201ENST00000334258 KIAA1109Q2LD37 5005 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 233.3 ms