RNA–Protein interactions for RNA: ENST00000302085.8

SMAD1-201, Transcript of SMAD family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD1, Length 1,966 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-201ENST00000302085 SPINK1P00995 79 aa12.76□□□□□ -0.37
SMAD1-201ENST00000302085 LIMD2Q9BT23 127 aa12.76□□□□□ -0.37
SMAD1-201ENST00000302085 KLKP1Q107X0 134 aa12.75□□□□□ -0.37
SMAD1-201ENST00000302085 TMEM254Q8TBM7 123 aa12.75□□□□□ -0.37
SMAD1-201ENST00000302085 LINC00304Q8N9R0 145 aa12.74□□□□□ -0.37
SMAD1-201ENST00000302085 A0A0U1RQV1 116 aa12.7□□□□□ -0.38
SMAD1-201ENST00000302085 Q5VSD8 79 aa12.69□□□□□ -0.38
SMAD1-201ENST00000302085 C5orf47Q569G3 176 aa12.68□□□□□ -0.38
SMAD1-201ENST00000302085 SPAG11AQ6PDA7 123 aa12.68□□□□□ -0.38
SMAD1-201ENST00000302085 KRTAP17-1Q9BYP8 105 aa12.68□□□□□ -0.38
SMAD1-201ENST00000302085 RPS29P62273 56 aaKnown RBP12.65□□□□□ -0.38
SMAD1-201ENST00000302085 H7BZZ5 65 aa12.64□□□□□ -0.39
SMAD1-201ENST00000302085 MRPL34Q9BQ48 92 aaKnown RBP12.64□□□□□ -0.39
SMAD1-201ENST00000302085 HSPG2P98160 4391 aa12.63□□□□□ -0.39
SMAD1-201ENST00000302085 C8orf87E5RJ46 101 aa12.62□□□□□ -0.39
SMAD1-201ENST00000302085 PKHD1L1Q86WI1 4243 aa12.61□□□□□ -0.39
SMAD1-201ENST00000302085 TMEM258P61165 79 aa12.6□□□□□ -0.39
SMAD1-201ENST00000302085 RYR1P21817 5038 aa12.6□□□□□ -0.39
SMAD1-201ENST00000302085 ZCCHC13Q8WW36 166 aaKnown RBP12.59□□□□□ -0.39
SMAD1-201ENST00000302085 LINC00313P59037 77 aa12.58□□□□□ -0.4
SMAD1-201ENST00000302085 NDUFC1O43677 76 aa12.57□□□□□ -0.4
SMAD1-201ENST00000302085 TP53AIP1Q9HCN2 124 aa12.57□□□□□ -0.4
SMAD1-201ENST00000302085 NDUFS5O43920 106 aa12.56□□□□□ -0.4
SMAD1-201ENST00000302085 H0Y9P7 68 aa12.56□□□□□ -0.4
SMAD1-201ENST00000302085 MP68P56378 58 aa12.55□□□□□ -0.4
SMAD1-201ENST00000302085 LINC00208Q96KT6 92 aa12.51□□□□□ -0.41
SMAD1-201ENST00000302085 TRAV22A0A0B4J277 110 aa12.5□□□□□ -0.41
SMAD1-201ENST00000302085 KRTAP10-8P60410 259 aa12.5□□□□□ -0.41
SMAD1-201ENST00000302085 KRTAP16-1A8MUX0 517 aa12.49□□□□□ -0.41
SMAD1-201ENST00000302085 Q8N1X5 172 aa12.49□□□□□ -0.41
SMAD1-201ENST00000302085 KIAA1109Q2LD37 5005 aa12.48□□□□□ -0.41
SMAD1-201ENST00000302085 H3BPC8 53 aa12.47□□□□□ -0.41
SMAD1-201ENST00000302085 EPPK1P58107 5090 aaKnown RBP12.46□□□□□ -0.41
SMAD1-201ENST00000302085 FAM236DA0A1B0GTK5 79 aa12.45□□□□□ -0.42
SMAD1-201ENST00000302085 FAM236CP0DP71 79 aa12.45□□□□□ -0.42
SMAD1-201ENST00000302085 C1orf64Q8NEQ6 169 aa12.45□□□□□ -0.42
SMAD1-201ENST00000302085 Q8N9P0 234 aaPredicted RBP12.44□□□□□ -0.42
SMAD1-201ENST00000302085 Q5W150 140 aa12.42□□□□□ -0.42
SMAD1-201ENST00000302085 FLG2Q5D862 2391 aaPredicted RBP12.39□□□□□ -0.43
SMAD1-201ENST00000302085 KRTAP13-3Q3SY46 172 aa12.38□□□□□ -0.43
SMAD1-201ENST00000302085 RETNLBQ9BQ08 111 aa12.38□□□□□ -0.43
SMAD1-201ENST00000302085 LRP1Q07954 4544 aaKnown RBP12.37□□□□□ -0.43
SMAD1-201ENST00000302085 TNXBP22105 4242 aa12.32□□□□□ -0.44
SMAD1-201ENST00000302085 ATP5EP56381 51 aaPredicted RBP12.31□□□□□ -0.44
SMAD1-201ENST00000302085 RPS28P62857 69 aaKnown RBP12.3□□□□□ -0.44
SMAD1-201ENST00000302085 MT1HL1P0DM35 61 aa12.29□□□□□ -0.44
SMAD1-201ENST00000302085 C9orf92A6NGG3 77 aa12.26□□□□□ -0.45
SMAD1-201ENST00000302085 FAT3Q8TDW7 4589 aa12.24□□□□□ -0.45
SMAD1-201ENST00000302085 OXTP01178 125 aa12.24□□□□□ -0.45
SMAD1-201ENST00000302085 LOC101927531A0A1B0GV80 90 aa12.23□□□□□ -0.45
SMAD1-201ENST00000302085 PCOTHQ58A44 107 aa12.23□□□□□ -0.45
SMAD1-201ENST00000302085 KRTAP4-5Q9BYR2 181 aa12.23□□□□□ -0.45
SMAD1-201ENST00000302085 SERP1Q9Y6X1 66 aa12.23□□□□□ -0.45
SMAD1-201ENST00000302085 PRR4Q16378 134 aa12.21□□□□□ -0.45
SMAD1-201ENST00000302085 SPANXA2-OT1Q8N9U9 137 aa12.2□□□□□ -0.46
SMAD1-201ENST00000302085 DMBT1Q9UGM3 2413 aaPredicted RBP12.2□□□□□ -0.46
SMAD1-201ENST00000302085 CYP4F30PQ9H0H9 118 aa12.19□□□□□ -0.46
SMAD1-201ENST00000302085 C20orf166-AS1Q96NR2 134 aa12.15□□□□□ -0.46
SMAD1-201ENST00000302085 A8MUU9 505 aa12.14□□□□□ -0.47
SMAD1-201ENST00000302085 IGLV7-46A0A075B6I9 117 aa12.13□□□□□ -0.47
SMAD1-201ENST00000302085 IGKV2-30P06310 120 aa12.13□□□□□ -0.47
SMAD1-201ENST00000302085 FP248Q71RG6 208 aaPredicted RBP12.12□□□□□ -0.47
SMAD1-201ENST00000302085 MYCBP2O75592 4640 aa12.1□□□□□ -0.47
SMAD1-201ENST00000302085 IGKV2D-30A0A075B6S6 120 aa12.03□□□□□ -0.48
SMAD1-201ENST00000302085 HRES1P13985 223 aa12.01□□□□□ -0.49
SMAD1-201ENST00000302085 Q75L30 129 aa11.99□□□□□ -0.49
SMAD1-201ENST00000302085 SMIM26A0A096LP01 95 aa11.94□□□□□ -0.5
SMAD1-201ENST00000302085 C7orf65Q6ZTY9 151 aa11.92□□□□□ -0.5
SMAD1-201ENST00000302085 BIRC6Q9NR09 4857 aa11.91□□□□□ -0.5
SMAD1-201ENST00000302085 XP32Q5T750 250 aa11.89□□□□□ -0.51
SMAD1-201ENST00000302085 COA5Q86WW8 74 aa11.88□□□□□ -0.51
SMAD1-201ENST00000302085 RPL37P61927 97 aaKnown RBP11.85□□□□□ -0.51
SMAD1-201ENST00000302085 DMAC1Q96GE9 116 aa11.84□□□□□ -0.51
SMAD1-201ENST00000302085 ABCA13Q86UQ4 5058 aa11.84□□□□□ -0.51
SMAD1-201ENST00000302085 HERC2O95714 4834 aa11.82□□□□□ -0.52
SMAD1-201ENST00000302085 ATP11AUNQ6ZP68 121 aa11.81□□□□□ -0.52
SMAD1-201ENST00000302085 SPINK7P58062 85 aa11.8□□□□□ -0.52
SMAD1-201ENST00000302085 ACYP2P14621 99 aa11.78□□□□□ -0.52
SMAD1-201ENST00000302085 J3QL48 77 aa11.76□□□□□ -0.53
SMAD1-201ENST00000302085 TPRXLQ17RH7 258 aa11.75□□□□□ -0.53
SMAD1-201ENST00000302085 MPLKIPQ8TAP9 179 aa11.75□□□□□ -0.53
SMAD1-201ENST00000302085 C4orf26Q17RF5 130 aa11.73□□□□□ -0.53
SMAD1-201ENST00000302085 Q1T7F1 81 aa11.67□□□□□ -0.54
SMAD1-201ENST00000302085 KRTAP3-1Q9BYR8 98 aa11.61□□□□□ -0.55
SMAD1-201ENST00000302085 A8MUN3 132 aa11.59□□□□□ -0.55
SMAD1-201ENST00000302085 CHKB-CPT1BH3BT56 60 aa11.59□□□□□ -0.55
SMAD1-201ENST00000302085 V9GYY9 64 aa11.54□□□□□ -0.56
SMAD1-201ENST00000302085 COX6B2Q6YFQ2 88 aa11.52□□□□□ -0.57
SMAD1-201ENST00000302085 PSPHP1O15172 72 aa11.49□□□□□ -0.57
SMAD1-201ENST00000302085 LPAP08519 4548 aa11.49□□□□□ -0.57
SMAD1-201ENST00000302085 LRP2P98164 4655 aa11.47□□□□□ -0.57
SMAD1-201ENST00000302085 LINC01558Q9Y6Z2 57 aa11.47□□□□□ -0.57
SMAD1-201ENST00000302085 PRR15LQ9BU68 103 aa11.41□□□□□ -0.58
SMAD1-201ENST00000302085 Q5VV11 94 aa11.37□□□□□ -0.59
SMAD1-201ENST00000302085 SEC61BP60468 96 aaKnown RBP11.34□□□□□ -0.59
SMAD1-201ENST00000302085 PCLOQ9Y6V0 5065 aa11.33□□□□□ -0.6
SMAD1-201ENST00000302085 SPTSSBQ8NFR3 76 aa11.27□□□□□ -0.61
SMAD1-201ENST00000302085 KRTAP4-1Q9BYQ7 146 aa11.21□□□□□ -0.62
SMAD1-201ENST00000302085 A0A1B0GU69 56 aa11.2□□□□□ -0.62
SMAD1-201ENST00000302085 H1FX-AS1Q4G0G2 97 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms