RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 TMEM258P61165 79 aa12.12□□□□□ -0.47
YBX3-202ENST00000279550 A0A1B0GVX0 72 aa12.11□□□□□ -0.47
YBX3-202ENST00000279550 C8orf17Q9NRJ1 99 aa12.11□□□□□ -0.47
YBX3-202ENST00000279550 IGHV6-1A0A0B4J1U7 121 aa12.1□□□□□ -0.47
YBX3-202ENST00000279550 PKHD1L1Q86WI1 4243 aa12.09□□□□□ -0.47
YBX3-202ENST00000279550 PRR26Q8N8Z3 221 aa12.08□□□□□ -0.47
YBX3-202ENST00000279550 ASB16-AS1Q495Z4 193 aa12.08□□□□□ -0.48
YBX3-202ENST00000279550 hDV103S1A0JD37 113 aa12.07□□□□□ -0.48
YBX3-202ENST00000279550 NOTCH2NLQ7Z3S9 236 aa12.07□□□□□ -0.48
YBX3-202ENST00000279550 TYMSOSQ8TAI1 123 aa12.06□□□□□ -0.48
YBX3-202ENST00000279550 BIRC6Q9NR09 4857 aa12.04□□□□□ -0.48
YBX3-202ENST00000279550 Q5XG85 94 aa12.02□□□□□ -0.49
YBX3-202ENST00000279550 C5orf47Q569G3 176 aa12.01□□□□□ -0.49
YBX3-202ENST00000279550 ZCCHC13Q8WW36 166 aaKnown RBP12.01□□□□□ -0.49
YBX3-202ENST00000279550 C1orf195Q5TG92 126 aa12□□□□□ -0.49
YBX3-202ENST00000279550 NDUFC1O43677 76 aa12□□□□□ -0.49
YBX3-202ENST00000279550 KRTAP4-5Q9BYR2 181 aa11.99□□□□□ -0.49
YBX3-202ENST00000279550 FAM236DA0A1B0GTK5 79 aa11.97□□□□□ -0.49
YBX3-202ENST00000279550 FAM236CP0DP71 79 aa11.97□□□□□ -0.49
YBX3-202ENST00000279550 H0Y9P7 68 aa11.94□□□□□ -0.5
YBX3-202ENST00000279550 MRPL34Q9BQ48 92 aaKnown RBP11.93□□□□□ -0.5
YBX3-202ENST00000279550 LIMD2Q9BT23 127 aa11.93□□□□□ -0.5
YBX3-202ENST00000279550 LRP1Q07954 4544 aaKnown RBP11.93□□□□□ -0.5
YBX3-202ENST00000279550 C4orf48Q5BLP8 95 aa11.92□□□□□ -0.5
YBX3-202ENST00000279550 LINC00304Q8N9R0 145 aa11.91□□□□□ -0.5
YBX3-202ENST00000279550 MP68P56378 58 aa11.91□□□□□ -0.5
YBX3-202ENST00000279550 LINC00208Q96KT6 92 aa11.9□□□□□ -0.5
YBX3-202ENST00000279550 SPINK1P00995 79 aa11.89□□□□□ -0.51
YBX3-202ENST00000279550 KRTAP10-8P60410 259 aa11.89□□□□□ -0.51
YBX3-202ENST00000279550 FLG2Q5D862 2391 aaPredicted RBP11.88□□□□□ -0.51
YBX3-202ENST00000279550 C8orf87E5RJ46 101 aa11.87□□□□□ -0.51
YBX3-202ENST00000279550 NDUFS5O43920 106 aa11.87□□□□□ -0.51
YBX3-202ENST00000279550 SPAG11AQ6PDA7 123 aa11.87□□□□□ -0.51
YBX3-202ENST00000279550 HERC2O95714 4834 aa11.86□□□□□ -0.51
YBX3-202ENST00000279550 OXTP01178 125 aa11.86□□□□□ -0.51
YBX3-202ENST00000279550 MYCBP2O75592 4640 aa11.86□□□□□ -0.51
YBX3-202ENST00000279550 TRAV22A0A0B4J277 110 aa11.86□□□□□ -0.51
YBX3-202ENST00000279550 TP53AIP1Q9HCN2 124 aa11.86□□□□□ -0.51
YBX3-202ENST00000279550 FAT3Q8TDW7 4589 aa11.85□□□□□ -0.51
YBX3-202ENST00000279550 RPS28P62857 69 aaKnown RBP11.83□□□□□ -0.52
YBX3-202ENST00000279550 TNXBP22105 4242 aa11.83□□□□□ -0.52
YBX3-202ENST00000279550 H3BPC8 53 aa11.83□□□□□ -0.52
YBX3-202ENST00000279550 RPS29P62273 56 aaKnown RBP11.82□□□□□ -0.52
YBX3-202ENST00000279550 LINC00313P59037 77 aa11.81□□□□□ -0.52
YBX3-202ENST00000279550 C1orf64Q8NEQ6 169 aa11.81□□□□□ -0.52
YBX3-202ENST00000279550 MT1HL1P0DM35 61 aa11.8□□□□□ -0.52
YBX3-202ENST00000279550 ATP5EP56381 51 aaPredicted RBP11.8□□□□□ -0.52
YBX3-202ENST00000279550 SERP1Q9Y6X1 66 aa11.77□□□□□ -0.53
YBX3-202ENST00000279550 KRTAP16-1A8MUX0 517 aa11.76□□□□□ -0.53
YBX3-202ENST00000279550 Q5W150 140 aa11.75□□□□□ -0.53
YBX3-202ENST00000279550 KRTAP13-3Q3SY46 172 aa11.73□□□□□ -0.53
YBX3-202ENST00000279550 LCE2DQ5TA82 110 aaPredicted RBP11.72□□□□□ -0.53
YBX3-202ENST00000279550 ABCA13Q86UQ4 5058 aa11.71□□□□□ -0.53
YBX3-202ENST00000279550 Q8N9P0 234 aaPredicted RBP11.7□□□□□ -0.54
YBX3-202ENST00000279550 PRR4Q16378 134 aa11.69□□□□□ -0.54
YBX3-202ENST00000279550 PCOTHQ58A44 107 aa11.64□□□□□ -0.55
YBX3-202ENST00000279550 RETNLBQ9BQ08 111 aa11.63□□□□□ -0.55
YBX3-202ENST00000279550 CYP4F30PQ9H0H9 118 aa11.63□□□□□ -0.55
YBX3-202ENST00000279550 SPANXA2-OT1Q8N9U9 137 aa11.6□□□□□ -0.55
YBX3-202ENST00000279550 DMBT1Q9UGM3 2413 aaPredicted RBP11.6□□□□□ -0.55
YBX3-202ENST00000279550 LOC101927531A0A1B0GV80 90 aa11.57□□□□□ -0.56
YBX3-202ENST00000279550 J3QL48 77 aa11.56□□□□□ -0.56
YBX3-202ENST00000279550 IGLV7-46A0A075B6I9 117 aa11.52□□□□□ -0.56
YBX3-202ENST00000279550 C9orf92A6NGG3 77 aa11.5□□□□□ -0.57
YBX3-202ENST00000279550 SMIM26A0A096LP01 95 aa11.49□□□□□ -0.57
YBX3-202ENST00000279550 FP248Q71RG6 208 aaPredicted RBP11.48□□□□□ -0.57
YBX3-202ENST00000279550 IGKV2-30P06310 120 aa11.46□□□□□ -0.57
YBX3-202ENST00000279550 PCLOQ9Y6V0 5065 aa11.46□□□□□ -0.58
YBX3-202ENST00000279550 A8MUU9 505 aa11.38□□□□□ -0.59
YBX3-202ENST00000279550 C20orf166-AS1Q96NR2 134 aa11.38□□□□□ -0.59
YBX3-202ENST00000279550 HRES1P13985 223 aa11.38□□□□□ -0.59
YBX3-202ENST00000279550 C4orf26Q17RF5 130 aa11.38□□□□□ -0.59
YBX3-202ENST00000279550 IGKV2D-30A0A075B6S6 120 aa11.37□□□□□ -0.59
YBX3-202ENST00000279550 COA5Q86WW8 74 aa11.35□□□□□ -0.59
YBX3-202ENST00000279550 MPLKIPQ8TAP9 179 aa11.32□□□□□ -0.6
YBX3-202ENST00000279550 KRTAP3-3Q9BYR6 98 aa11.27□□□□□ -0.61
YBX3-202ENST00000279550 KRTAP3-2Q9BYR7 98 aa11.27□□□□□ -0.61
YBX3-202ENST00000279550 TPRXLQ17RH7 258 aa11.23□□□□□ -0.61
YBX3-202ENST00000279550 DMAC1Q96GE9 116 aa11.23□□□□□ -0.61
YBX3-202ENST00000279550 C7orf65Q6ZTY9 151 aa11.22□□□□□ -0.61
YBX3-202ENST00000279550 Q75L30 129 aa11.21□□□□□ -0.62
YBX3-202ENST00000279550 Q1T7F1 81 aa11.2□□□□□ -0.62
YBX3-202ENST00000279550 ACYP2P14621 99 aa11.15□□□□□ -0.62
YBX3-202ENST00000279550 XP32Q5T750 250 aa11.15□□□□□ -0.62
YBX3-202ENST00000279550 HERC1Q15751 4861 aa11.13□□□□□ -0.63
YBX3-202ENST00000279550 LPAP08519 4548 aa11.1□□□□□ -0.63
YBX3-202ENST00000279550 SPINK7P58062 85 aa11.07□□□□□ -0.64
YBX3-202ENST00000279550 RPL37P61927 97 aaKnown RBP11.06□□□□□ -0.64
YBX3-202ENST00000279550 PSPHP1O15172 72 aa11.05□□□□□ -0.64
YBX3-202ENST00000279550 V9GYY9 64 aa11.04□□□□□ -0.64
YBX3-202ENST00000279550 A8MUN3 132 aa11.03□□□□□ -0.64
YBX3-202ENST00000279550 CHKB-CPT1BH3BT56 60 aa11.01□□□□□ -0.65
YBX3-202ENST00000279550 ATP11AUNQ6ZP68 121 aa11.01□□□□□ -0.65
YBX3-202ENST00000279550 PRR15LQ9BU68 103 aa10.97□□□□□ -0.65
YBX3-202ENST00000279550 LRP2P98164 4655 aa10.97□□□□□ -0.65
YBX3-202ENST00000279550 LINC01558Q9Y6Z2 57 aa10.96□□□□□ -0.65
YBX3-202ENST00000279550 KRTAP3-1Q9BYR8 98 aa10.95□□□□□ -0.66
YBX3-202ENST00000279550 Q5VV11 94 aa10.95□□□□□ -0.66
YBX3-202ENST00000279550 HMCN2Q8NDA2 5059 aa10.93□□□□□ -0.66
YBX3-202ENST00000279550 COX6B2Q6YFQ2 88 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms