RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 LAMA1P25391 3075 aa4.27□□□□□ -1.73
PTCD3-201ENST00000254630 UTP20O75691 2785 aaKnown RBP4.26□□□□□ -1.73
PTCD3-201ENST00000254630 NBEAL2Q6ZNJ1 2754 aa4.26□□□□□ -1.73
PTCD3-201ENST00000254630 VCANP13611 3396 aa4.25□□□□□ -1.73
PTCD3-201ENST00000254630 DMBT1Q9UGM3 2413 aaPredicted RBP4.24□□□□□ -1.73
PTCD3-201ENST00000254630 EYSQ5T1H1 3165 aa4.24□□□□□ -1.73
PTCD3-201ENST00000254630 DSPP15924 2871 aaKnown RBP4.24□□□□□ -1.73
PTCD3-201ENST00000254630 ALMS1Q8TCU4 4167 aa4.22□□□□□ -1.73
PTCD3-201ENST00000254630 MAP1AP78559 2803 aaPredicted RBP4.22□□□□□ -1.73
PTCD3-201ENST00000254630 ANK3Q12955 4377 aaKnown RBP4.22□□□□□ -1.73
PTCD3-201ENST00000254630 VPS13AQ96RL7 3174 aa4.22□□□□□ -1.73
PTCD3-201ENST00000254630 FREM2Q5SZK8 3169 aa4.22□□□□□ -1.73
PTCD3-201ENST00000254630 KRTAP13-4Q3LI77 160 aa4.22□□□□□ -1.73
PTCD3-201ENST00000254630 KALRNO60229 2985 aa4.21□□□□□ -1.74
PTCD3-201ENST00000254630 ZZEF1O43149 2961 aa4.2□□□□□ -1.74
PTCD3-201ENST00000254630 COL6A5A8TX70 2615 aa4.17□□□□□ -1.74
PTCD3-201ENST00000254630 NSD1Q96L73 2696 aaPredicted RBP4.17□□□□□ -1.74
PTCD3-201ENST00000254630 KRTAP12-1P59990 96 aa4.17□□□□□ -1.74
PTCD3-201ENST00000254630 APCP25054 2843 aa4.16□□□□□ -1.74
PTCD3-201ENST00000254630 HRNRQ86YZ3 2850 aaPredicted RBP4.14□□□□□ -1.75
PTCD3-201ENST00000254630 ASPMQ8IZT6 3477 aa4.14□□□□□ -1.75
PTCD3-201ENST00000254630 KRTAP3-1Q9BYR8 98 aa4.14□□□□□ -1.75
PTCD3-201ENST00000254630 HIVEP1P15822 2718 aa4.12□□□□□ -1.75
PTCD3-201ENST00000254630 ITPR1Q14643 2758 aa4.11□□□□□ -1.75
PTCD3-201ENST00000254630 REV3LO60673 3130 aa4.11□□□□□ -1.75
PTCD3-201ENST00000254630 ATMQ13315 3056 aa4.11□□□□□ -1.75
PTCD3-201ENST00000254630 UBR5O95071 2799 aaPredicted RBP4.11□□□□□ -1.75
PTCD3-201ENST00000254630 BOD1L1Q8NFC6 3051 aa4.11□□□□□ -1.75
PTCD3-201ENST00000254630 CRYBG3Q68DQ2 2970 aa4.1□□□□□ -1.75
PTCD3-201ENST00000254630 DMXL2Q8TDJ6 3036 aa4.09□□□□□ -1.75
PTCD3-201ENST00000254630 STAB1Q9NY15 2570 aa4.09□□□□□ -1.75
PTCD3-201ENST00000254630 KRTAP15-1Q3LI76 137 aa4.09□□□□□ -1.75
PTCD3-201ENST00000254630 NBPF19A0A087WUL8 3843 aa4.09□□□□□ -1.76
PTCD3-201ENST00000254630 CFAP47Q6ZTR5 3102 aa4.08□□□□□ -1.76
PTCD3-201ENST00000254630 STAB2Q8WWQ8 2551 aa4.07□□□□□ -1.76
PTCD3-201ENST00000254630 HUWE1Q7Z6Z7 4374 aaKnown RBP4.07□□□□□ -1.76
PTCD3-201ENST00000254630 NOTCH1P46531 2555 aa4.07□□□□□ -1.76
PTCD3-201ENST00000254630 SPEGQ15772 3267 aa4.06□□□□□ -1.76
PTCD3-201ENST00000254630 ADGRG4Q8IZF6 3080 aa4.05□□□□□ -1.76
PTCD3-201ENST00000254630 COL12A1Q99715 3063 aa4.05□□□□□ -1.76
PTCD3-201ENST00000254630 WDFY3Q8IZQ1 3526 aa4.05□□□□□ -1.76
PTCD3-201ENST00000254630 FRYLO94915 3013 aa4.05□□□□□ -1.76
PTCD3-201ENST00000254630 DMXL1Q9Y485 3027 aa4.04□□□□□ -1.76
PTCD3-201ENST00000254630 FLG2Q5D862 2391 aaPredicted RBP4.04□□□□□ -1.76
PTCD3-201ENST00000254630 MYO15AQ9UKN7 3530 aa4.02□□□□□ -1.77
PTCD3-201ENST00000254630 TENM4Q6N022 2769 aa4.01□□□□□ -1.77
PTCD3-201ENST00000254630 MT1HL1P0DM35 61 aa4□□□□□ -1.77
PTCD3-201ENST00000254630 KRTAP10-6P60371 365 aaPredicted RBP3.99□□□□□ -1.77
PTCD3-201ENST00000254630 AKAP9Q99996 3911 aa3.98□□□□□ -1.77
PTCD3-201ENST00000254630 DCHS1Q96JQ0 3298 aa3.98□□□□□ -1.77
PTCD3-201ENST00000254630 NBEAQ8NFP9 2946 aa3.98□□□□□ -1.77
PTCD3-201ENST00000254630 TACC2O95359 2948 aa3.93□□□□□ -1.78
PTCD3-201ENST00000254630 FBN2P35556 2912 aa3.93□□□□□ -1.78
PTCD3-201ENST00000254630 FLNCQ14315 2725 aa3.92□□□□□ -1.78
PTCD3-201ENST00000254630 ZFHX4Q86UP3 3567 aa3.92□□□□□ -1.78
PTCD3-201ENST00000254630 KRTAP10-12P60413 245 aa3.92□□□□□ -1.78
PTCD3-201ENST00000254630 PDZD2O15018 2839 aa3.92□□□□□ -1.78
PTCD3-201ENST00000254630 KRTAP4-5Q9BYR2 181 aa3.91□□□□□ -1.78
PTCD3-201ENST00000254630 BSNQ9UPA5 3926 aa3.91□□□□□ -1.78
PTCD3-201ENST00000254630 LOC400499M0QZD8 3231 aa3.9□□□□□ -1.79
PTCD3-201ENST00000254630 TENM2Q9NT68 2774 aa3.9□□□□□ -1.79
PTCD3-201ENST00000254630 CSMD1Q96PZ7 3565 aa3.89□□□□□ -1.79
PTCD3-201ENST00000254630 ASH1LQ9NR48 2969 aaKnown RBP3.89□□□□□ -1.79
PTCD3-201ENST00000254630 KRTAP10-4P60372 401 aaPredicted RBP3.89□□□□□ -1.79
PTCD3-201ENST00000254630 KRTAP3-3Q9BYR6 98 aa3.89□□□□□ -1.79
PTCD3-201ENST00000254630 CELSR1Q9NYQ6 3014 aa3.88□□□□□ -1.79
PTCD3-201ENST00000254630 CRCT1Q9UGL9 99 aa3.88□□□□□ -1.79
PTCD3-201ENST00000254630 KRTAP3-2Q9BYR7 98 aa3.86□□□□□ -1.79
PTCD3-201ENST00000254630 RELNP78509 3460 aa3.86□□□□□ -1.79
PTCD3-201ENST00000254630 CELSR2Q9HCU4 2923 aa3.84□□□□□ -1.79
PTCD3-201ENST00000254630 DMDP11532 3685 aa3.83□□□□□ -1.8
PTCD3-201ENST00000254630 NIPBLQ6KC79 2804 aaeCLIP3.83□□□□□ -1.82e-31■■■□□ 14.8
PTCD3-201ENST00000254630 DCHS2Q6V1P9 2916 aa3.82□□□□□ -1.8
PTCD3-201ENST00000254630 SMG1Q96Q15 3661 aaKnown RBP3.82□□□□□ -1.8
PTCD3-201ENST00000254630 TGP01266 2768 aa3.81□□□□□ -1.8
PTCD3-201ENST00000254630 LAMA5O15230 3695 aa3.81□□□□□ -1.8
PTCD3-201ENST00000254630 ZANQ9Y493 2812 aa3.78□□□□□ -1.8
PTCD3-201ENST00000254630 INE1O15225 51 aa3.77□□□□□ -1.81
PTCD3-201ENST00000254630 LCE3AQ5TA76 89 aa3.77□□□□□ -1.81
PTCD3-201ENST00000254630 DNAH3Q8TD57 4116 aa3.77□□□□□ -1.81
PTCD3-201ENST00000254630 NF1P21359 2839 aa3.75□□□□□ -1.81
PTCD3-201ENST00000254630 DNAH9Q9NYC9 4486 aa3.75□□□□□ -1.81
PTCD3-201ENST00000254630 SPENQ96T58 3664 aaKnown RBP3.75□□□□□ -1.81
PTCD3-201ENST00000254630 KRTAP12-3P60328 96 aa3.75□□□□□ -1.81
PTCD3-201ENST00000254630 DNAH2Q9P225 4427 aa3.72□□□□□ -1.81
PTCD3-201ENST00000254630 MXRA5Q9NR99 2828 aa3.72□□□□□ -1.81
PTCD3-201ENST00000254630 KRTAP23-1A1A580 65 aa3.72□□□□□ -1.81
PTCD3-201ENST00000254630 DNAH1Q9P2D7 4330 aa3.72□□□□□ -1.81
PTCD3-201ENST00000254630 TENM1Q9UKZ4 2725 aa3.71□□□□□ -1.81
PTCD3-201ENST00000254630 LORP23490 312 aaPredicted RBP3.69□□□□□ -1.82
PTCD3-201ENST00000254630 VPS13CQ709C8 3753 aa3.68□□□□□ -1.82
PTCD3-201ENST00000254630 TENM3Q9P273 2699 aa3.68□□□□□ -1.82
PTCD3-201ENST00000254630 FBN1P35555 2871 aaKnown RBP3.67□□□□□ -1.82
PTCD3-201ENST00000254630 OTOGQ6ZRI0 2925 aa3.66□□□□□ -1.82
PTCD3-201ENST00000254630 KRTAP8-1Q8IUC2 63 aa3.65□□□□□ -1.82
PTCD3-201ENST00000254630 TRRAPQ9Y4A5 3859 aa3.65□□□□□ -1.83
PTCD3-201ENST00000254630 DNAH6Q9C0G6 4158 aa3.64□□□□□ -1.83
PTCD3-201ENST00000254630 SVEP1Q4LDE5 3571 aa3.64□□□□□ -1.83
PTCD3-201ENST00000254630 DNAH10Q8IVF4 4471 aa3.61□□□□□ -1.83
PTCD3-201ENST00000254630 DNAH11Q96DT5 4516 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms