RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 A0A1B0GVX0 72 aa13.17□□□□□ -0.3
CCDC9-201ENST00000221922 IGLV7-46A0A075B6I9 117 aa13.14□□□□□ -0.31
CCDC9-201ENST00000221922 CDK2AP2O75956 126 aa13.14□□□□□ -0.31
CCDC9-201ENST00000221922 PSPHP1O15172 72 aa13.13□□□□□ -0.31
CCDC9-201ENST00000221922 KRTAP10-1P60331 282 aa13.13□□□□□ -0.31
CCDC9-201ENST00000221922 PKD1P98161 4303 aa13.12□□□□□ -0.31
CCDC9-201ENST00000221922 IGHV6-1A0A0B4J1U7 121 aa13.11□□□□□ -0.31
CCDC9-201ENST00000221922 FAT2Q9NYQ8 4349 aa13.11□□□□□ -0.31
CCDC9-201ENST00000221922 HYDINQ4G0P3 5121 aa13.09□□□□□ -0.31
CCDC9-201ENST00000221922 CD164Q04900 197 aa13.09□□□□□ -0.31
CCDC9-201ENST00000221922 SSBP3-AS1Q7Z2R9 100 aa13.08□□□□□ -0.32
CCDC9-201ENST00000221922 Q8N9P0 234 aaPredicted RBP13.06□□□□□ -0.32
CCDC9-201ENST00000221922 MRPL34Q9BQ48 92 aaKnown RBP13.06□□□□□ -0.32
CCDC9-201ENST00000221922 A8MUN3 132 aa13.06□□□□□ -0.32
CCDC9-201ENST00000221922 C1orf195Q5TG92 126 aa13.06□□□□□ -0.32
CCDC9-201ENST00000221922 PCOTHQ58A44 107 aa13.03□□□□□ -0.32
CCDC9-201ENST00000221922 COA5Q86WW8 74 aa13.03□□□□□ -0.32
CCDC9-201ENST00000221922 LIMD2Q9BT23 127 aa13.03□□□□□ -0.32
CCDC9-201ENST00000221922 A0A087X002 238 aa13.02□□□□□ -0.33
CCDC9-201ENST00000221922 NDUFS5O43920 106 aa13.02□□□□□ -0.33
CCDC9-201ENST00000221922 NOTCH2NLQ7Z3S9 236 aa13.02□□□□□ -0.33
CCDC9-201ENST00000221922 Q5VV11 94 aa13.01□□□□□ -0.33
CCDC9-201ENST00000221922 SACSQ9NZJ4 4579 aa12.95□□□□□ -0.34
CCDC9-201ENST00000221922 SPINK6Q6UWN8 80 aa12.94□□□□□ -0.34
CCDC9-201ENST00000221922 LRP1BQ9NZR2 4599 aa12.91□□□□□ -0.34
CCDC9-201ENST00000221922 PRR15LQ9BU68 103 aa12.89□□□□□ -0.35
CCDC9-201ENST00000221922 LOC101927531A0A1B0GV80 90 aa12.89□□□□□ -0.35
CCDC9-201ENST00000221922 KRTAP13-3Q3SY46 172 aa12.88□□□□□ -0.35
CCDC9-201ENST00000221922 C8orf87E5RJ46 101 aa12.87□□□□□ -0.35
CCDC9-201ENST00000221922 KRTAP13-2Q52LG2 175 aa12.87□□□□□ -0.35
CCDC9-201ENST00000221922 CHKB-CPT1BH3BT56 60 aa12.85□□□□□ -0.35
CCDC9-201ENST00000221922 Q5W150 140 aa12.85□□□□□ -0.35
CCDC9-201ENST00000221922 Q75L30 129 aa12.84□□□□□ -0.35
CCDC9-201ENST00000221922 HRES1P13985 223 aa12.83□□□□□ -0.36
CCDC9-201ENST00000221922 KMT2CQ8NEZ4 4911 aaKnown RBP12.82□□□□□ -0.36
CCDC9-201ENST00000221922 KRTAP1-4P0C5Y4 121 aa12.81□□□□□ -0.36
CCDC9-201ENST00000221922 LINC01558Q9Y6Z2 57 aa12.79□□□□□ -0.36
CCDC9-201ENST00000221922 RYR2Q92736 4967 aa12.78□□□□□ -0.36
CCDC9-201ENST00000221922 A8MU10 97 aa12.77□□□□□ -0.37
CCDC9-201ENST00000221922 A0A1B0GVY2 172 aa12.74□□□□□ -0.37
CCDC9-201ENST00000221922 VPS13BQ7Z7G8 4022 aa12.74□□□□□ -0.37
CCDC9-201ENST00000221922 SPAG11AQ6PDA7 123 aa12.74□□□□□ -0.37
CCDC9-201ENST00000221922 LINC00313P59037 77 aa12.73□□□□□ -0.37
CCDC9-201ENST00000221922 PKHD1P08F94 4074 aa12.72□□□□□ -0.37
CCDC9-201ENST00000221922 PLA2G1BP04054 148 aaKnown RBP12.69□□□□□ -0.38
CCDC9-201ENST00000221922 LCA10Q71F78 164 aa12.68□□□□□ -0.38
CCDC9-201ENST00000221922 A6NED7 52 aa12.67□□□□□ -0.38
CCDC9-201ENST00000221922 C4orf48Q5BLP8 95 aa12.67□□□□□ -0.38
CCDC9-201ENST00000221922 PMAIP1Q13794 54 aa12.66□□□□□ -0.38
CCDC9-201ENST00000221922 TYMSOSQ8TAI1 123 aa12.66□□□□□ -0.38
CCDC9-201ENST00000221922 FAM229AH3BQW9 127 aa12.64□□□□□ -0.39
CCDC9-201ENST00000221922 DYNC1H1Q14204 4646 aaKnown RBP12.62□□□□□ -0.39
CCDC9-201ENST00000221922 SPINK1P00995 79 aa12.61□□□□□ -0.39
CCDC9-201ENST00000221922 ACYP2P14621 99 aa12.61□□□□□ -0.39
CCDC9-201ENST00000221922 RYR3Q15413 4870 aa12.61□□□□□ -0.39
CCDC9-201ENST00000221922 CDC42SE1Q9NRR8 79 aa12.6□□□□□ -0.39
CCDC9-201ENST00000221922 ATP11AUNQ6ZP68 121 aa12.59□□□□□ -0.39
CCDC9-201ENST00000221922 DMAC1Q96GE9 116 aa12.58□□□□□ -0.39
CCDC9-201ENST00000221922 PRR26Q8N8Z3 221 aa12.58□□□□□ -0.4
CCDC9-201ENST00000221922 KRTAP16-1A8MUX0 517 aa12.57□□□□□ -0.4
CCDC9-201ENST00000221922 IGKV2-30P06310 120 aa12.55□□□□□ -0.4
CCDC9-201ENST00000221922 SMR3BP02814 79 aaPredicted RBP12.55□□□□□ -0.4
CCDC9-201ENST00000221922 RPS29P62273 56 aaKnown RBP12.52□□□□□ -0.41
CCDC9-201ENST00000221922 SPTSSBQ8NFR3 76 aa12.5□□□□□ -0.41
CCDC9-201ENST00000221922 SPINK7P58062 85 aa12.5□□□□□ -0.41
CCDC9-201ENST00000221922 KRTAP10-4P60372 401 aaPredicted RBP12.5□□□□□ -0.41
CCDC9-201ENST00000221922 RETNLBQ9BQ08 111 aa12.5□□□□□ -0.41
CCDC9-201ENST00000221922 APOBP04114 4563 aaKnown RBP12.49□□□□□ -0.41
CCDC9-201ENST00000221922 LINC00304Q8N9R0 145 aa12.49□□□□□ -0.41
CCDC9-201ENST00000221922 A6NN06 94 aa12.42□□□□□ -0.42
CCDC9-201ENST00000221922 KTN1-AS1Q86SY8 53 aa12.36□□□□□ -0.43
CCDC9-201ENST00000221922 FAT1Q14517 4588 aa12.34□□□□□ -0.43
CCDC9-201ENST00000221922 SEC61GP60059 68 aa12.32□□□□□ -0.44
CCDC9-201ENST00000221922 IGKV2D-30A0A075B6S6 120 aa12.31□□□□□ -0.44
CCDC9-201ENST00000221922 PKHD1L1Q86WI1 4243 aa12.27□□□□□ -0.44
CCDC9-201ENST00000221922 A0A1B0GU69 56 aa12.26□□□□□ -0.45
CCDC9-201ENST00000221922 C7orf65Q6ZTY9 151 aa12.22□□□□□ -0.45
CCDC9-201ENST00000221922 EPPK1P58107 5090 aaKnown RBP12.16□□□□□ -0.46
CCDC9-201ENST00000221922 SPATA8Q6RVD6 105 aa12.14□□□□□ -0.47
CCDC9-201ENST00000221922 C20orf166-AS1Q96NR2 134 aa12.11□□□□□ -0.47
CCDC9-201ENST00000221922 A8MUU9 505 aa12.1□□□□□ -0.47
CCDC9-201ENST00000221922 Q5VSD8 79 aa12.09□□□□□ -0.47
CCDC9-201ENST00000221922 C9orf92A6NGG3 77 aa12.09□□□□□ -0.47
CCDC9-201ENST00000221922 UQCR11O14957 56 aa12.07□□□□□ -0.48
CCDC9-201ENST00000221922 HSPG2P98160 4391 aa12.05□□□□□ -0.48
CCDC9-201ENST00000221922 RBM12B-AS1Q9P1G2 102 aa12.04□□□□□ -0.48
CCDC9-201ENST00000221922 MIR22HGQ0VDD5 57 aa12.04□□□□□ -0.48
CCDC9-201ENST00000221922 Q8N1X5 172 aa12.02□□□□□ -0.48
CCDC9-201ENST00000221922 KRTAP10-8P60410 259 aa12.02□□□□□ -0.49
CCDC9-201ENST00000221922 FLG2Q5D862 2391 aaPredicted RBP11.99□□□□□ -0.49
CCDC9-201ENST00000221922 RYR1P21817 5038 aa11.96□□□□□ -0.49
CCDC9-201ENST00000221922 TNXBP22105 4242 aa11.93□□□□□ -0.5
CCDC9-201ENST00000221922 KIAA1109Q2LD37 5005 aa11.93□□□□□ -0.5
CCDC9-201ENST00000221922 LRP1Q07954 4544 aaKnown RBP11.88□□□□□ -0.51
CCDC9-201ENST00000221922 KRTAP17-1Q9BYP8 105 aa11.88□□□□□ -0.51
CCDC9-201ENST00000221922 FAT3Q8TDW7 4589 aa11.84□□□□□ -0.51
CCDC9-201ENST00000221922 KRTAP3-1Q9BYR8 98 aa11.83□□□□□ -0.51
CCDC9-201ENST00000221922 BIRC6Q9NR09 4857 aa11.77□□□□□ -0.53
CCDC9-201ENST00000221922 PRAC1Q96KF2 57 aa11.76□□□□□ -0.53
CCDC9-201ENST00000221922 ADM2Q7Z4H4 148 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms