RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 C4BP0C0L5 1744 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 LRRC9Q6ZRR7 1453 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 RGPD8O14715 1765 aaPredicted RBP-0.67□□□□□ -2.52
VPS35-212ENST00000640313 RGPD5Q99666 1765 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 SCN11AQ9UI33 1791 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 ABCC2Q92887 1545 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 A0A1B0GUT8 65 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 EFCAB10A6NFE3 127 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 ATOX1O00244 68 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 MT1GP13640 62 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 ZNF720Q7Z2F6 126 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 PMCHL2Q9BQD1 86 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 NRKQ7Z2Y5 1582 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 CHD1O14646 1710 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 MON2Q7Z3U7 1717 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 USP32Q8NFA0 1604 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 CC2D2AQ9P2K1 1620 aa-0.67□□□□□ -2.52
VPS35-212ENST00000640313 RGPD2P0DJD1 1756 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 PRUNE2Q8WUY3 3088 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 LRRC7Q96NW7 1537 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 C5P01031 1676 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 IQCF6A8MYZ5 107 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 IFI6P09912 130 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 IAPPP10997 89 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 FAUP35544 74 aaKnown RBP-0.68□□□□□ -2.52
VPS35-212ENST00000640313 RPL38P63173 70 aaKnown RBP-0.68□□□□□ -2.52
VPS35-212ENST00000640313 GTF2H5Q6ZYL4 71 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 NALCNQ8IZF0 1738 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 DEFB106AQ8N104 65 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 MT1MQ8N339 61 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 BOD1L1Q8NFC6 3051 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 TMEM203Q969S6 136 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.68□□□□□ -2.52
VPS35-212ENST00000640313 GNG8Q9UK08 70 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 CRYBG3Q68DQ2 2970 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 ALKQ9UM73 1620 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 ATP7BP35670 1465 aa-0.68□□□□□ -2.52
VPS35-212ENST00000640313 NEXMIFQ5QGS0 1516 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 ZFYVE16Q7Z3T8 1539 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 CSMD2Q7Z408 3487 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 TLN1Q9Y490 2541 aaKnown RBP-0.69□□□□□ -2.52
VPS35-212ENST00000640313 UBR3Q6ZT12 1888 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 RGPD1P0DJD0 1748 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 QSER1Q2KHR3 1735 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 UQCRHLA0A096LP55 91 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 MMP24-AS1A0A0U1RRL7 71 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 MT2AP02795 61 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 HMGN2P05204 90 aaKnown RBP-0.69□□□□□ -2.52
VPS35-212ENST00000640313 TNP1P09430 55 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 PLGLAQ15195 96 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 COL5A1-AS1Q5SY13 56 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 CLPSL2Q6UWE3 100 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 DEPDC5O75140 1603 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 TEX14Q8IWB6 1497 aa-0.69□□□□□ -2.52
VPS35-212ENST00000640313 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.69□□□□□ -2.52
VPS35-212ENST00000640313 EPRSP07814 1512 aaKnown RBP-0.69□□□□□ -2.52
VPS35-212ENST00000640313 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.7□□□□□ -2.52
VPS35-212ENST00000640313 KIF20BQ96Q89 1820 aa-0.7□□□□□ -2.52
VPS35-212ENST00000640313 IGLV5-48A0A075B6I7 105 aa-0.7□□□□□ -2.52
VPS35-212ENST00000640313 C20orf202A1L168 122 aa-0.7□□□□□ -2.52
VPS35-212ENST00000640313 C14orf144Q96I85 54 aa-0.7□□□□□ -2.52
VPS35-212ENST00000640313 C20orf78Q9BR46 151 aa-0.7□□□□□ -2.52
VPS35-212ENST00000640313 CRYBG1Q9Y4K1 1723 aa-0.7□□□□□ -2.52
VPS35-212ENST00000640313 ZFHX4Q86UP3 3567 aa-0.7□□□□□ -2.52
VPS35-212ENST00000640313 FREM2Q5SZK8 3169 aa-0.7□□□□□ -2.52
VPS35-212ENST00000640313 NCOA2Q15596 1464 aa-0.71□□□□□ -2.52
VPS35-212ENST00000640313 MYMXA0A1B0GTQ4 84 aa-0.71□□□□□ -2.52
VPS35-212ENST00000640313 S100A10P60903 97 aa-0.71□□□□□ -2.52
VPS35-212ENST00000640313 WT1-ASQ06250 92 aa-0.71□□□□□ -2.52
VPS35-212ENST00000640313 WFDC9Q8NEX5 89 aa-0.71□□□□□ -2.52
VPS35-212ENST00000640313 DPY30Q9C005 99 aa-0.71□□□□□ -2.52
VPS35-212ENST00000640313 MAGI3Q5TCQ9 1506 aa-0.71□□□□□ -2.52
VPS35-212ENST00000640313 NWD1Q149M9 1564 aa-0.71□□□□□ -2.52
VPS35-212ENST00000640313 ABCA3Q99758 1704 aa-0.72□□□□□ -2.52
VPS35-212ENST00000640313 FANCAO15360 1455 aa-0.72□□□□□ -2.52
VPS35-212ENST00000640313 ATP10BO94823 1461 aa-0.72□□□□□ -2.52
VPS35-212ENST00000640313 CYB5AP00167 134 aa-0.72□□□□□ -2.52
VPS35-212ENST00000640313 ACYP1P07311 99 aa-0.72□□□□□ -2.52
VPS35-212ENST00000640313 MT1BP07438 61 aa-0.72□□□□□ -2.52
VPS35-212ENST00000640313 LINC00032P0C843 101 aa-0.72□□□□□ -2.52
VPS35-212ENST00000640313 RPS27P42677 84 aaKnown RBP-0.72□□□□□ -2.52
VPS35-212ENST00000640313 CRIP1P50238 77 aa-0.72□□□□□ -2.52
VPS35-212ENST00000640313 RPS27LQ71UM5 84 aaKnown RBP-0.72□□□□□ -2.52
VPS35-212ENST00000640313 ZNF831Q5JPB2 1677 aa-0.72□□□□□ -2.53
VPS35-212ENST00000640313 CDC42BPAQ5VT25 1732 aa-0.72□□□□□ -2.53
VPS35-212ENST00000640313 TIAM2Q8IVF5 1701 aa-0.72□□□□□ -2.53
VPS35-212ENST00000640313 DOT1LQ8TEK3 1739 aa-0.72□□□□□ -2.53
VPS35-212ENST00000640313 RGPD3A6NKT7 1758 aaPredicted RBP-0.73□□□□□ -2.53
VPS35-212ENST00000640313 RGPD4Q7Z3J3 1758 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 DIP2BQ9P265 1576 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 MYH4Q9Y623 1939 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 NESP48681 1621 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 DEFB131BA0A096LNP1 70 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 UMAD1C9J7I0 102 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 NDUFA4O00483 81 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 RBP2P50120 134 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 SMIM11AP58511 58 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 PEA15Q15121 130 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 NCMAPQ5T1S8 102 aa-0.73□□□□□ -2.53
VPS35-212ENST00000640313 RABAC1Q9UI14 185 aa-0.73□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms