RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 FAM30AQ9NZY2 134 aa9.47□□□□□ -0.89
CLN3-253ENST00000636977 DNAH9Q9NYC9 4486 aa9.47□□□□□ -0.89
CLN3-253ENST00000636977 IGKV2-24A0A0C4DH68 120 aa9.46□□□□□ -0.89
CLN3-253ENST00000636977 SRRM2Q9UQ35 2752 aaKnown RBP9.46□□□□□ -0.89
CLN3-253ENST00000636977 C1orf64Q8NEQ6 169 aa9.45□□□□□ -0.9
CLN3-253ENST00000636977 SPTSSBQ8NFR3 76 aa9.45□□□□□ -0.9
CLN3-253ENST00000636977 A0A096LNI7 61 aa9.44□□□□□ -0.9
CLN3-253ENST00000636977 hDV103S1A0JD37 113 aa9.44□□□□□ -0.9
CLN3-253ENST00000636977 A8MUN3 132 aa9.44□□□□□ -0.9
CLN3-253ENST00000636977 TRAV22A0A0B4J277 110 aa9.43□□□□□ -0.9
CLN3-253ENST00000636977 REG3GQ6UW15 175 aa9.43□□□□□ -0.9
CLN3-253ENST00000636977 PRLHP81277 87 aa9.43□□□□□ -0.9
CLN3-253ENST00000636977 SMIM29Q86T20 159 aa9.42□□□□□ -0.9
CLN3-253ENST00000636977 Q8NBF4 154 aa9.42□□□□□ -0.9
CLN3-253ENST00000636977 OCR1Q9BZK8 76 aa9.42□□□□□ -0.9
CLN3-253ENST00000636977 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.41□□□□□ -0.9
CLN3-253ENST00000636977 DNAH7Q8WXX0 4024 aa9.4□□□□□ -0.9
CLN3-253ENST00000636977 RBM12B-AS1Q9P1G2 102 aa9.4□□□□□ -0.9
CLN3-253ENST00000636977 KRTAP11-1Q8IUC1 163 aa9.39□□□□□ -0.91
CLN3-253ENST00000636977 CHTF8P0CG12 524 aa9.38□□□□□ -0.91
CLN3-253ENST00000636977 LINC00476Q8WZB0 136 aa9.38□□□□□ -0.91
CLN3-253ENST00000636977 DSCR10P59022 87 aa9.38□□□□□ -0.91
CLN3-253ENST00000636977 Q1T7F1 81 aa9.37□□□□□ -0.91
CLN3-253ENST00000636977 DEFB116Q30KQ4 102 aa9.37□□□□□ -0.91
CLN3-253ENST00000636977 SPRR4Q96PI1 79 aa9.37□□□□□ -0.91
CLN3-253ENST00000636977 K7EQZ3 153 aa9.36□□□□□ -0.91
CLN3-253ENST00000636977 PSCAO43653 123 aa9.36□□□□□ -0.91
CLN3-253ENST00000636977 C16orf90A8MZG2 172 aa9.35□□□□□ -0.91
CLN3-253ENST00000636977 IGFL1Q6UW32 110 aa9.35□□□□□ -0.91
CLN3-253ENST00000636977 PHF5AQ7RTV0 110 aaKnown RBP9.33□□□□□ -0.92
CLN3-253ENST00000636977 CHKB-CPT1BH3BT56 60 aa9.33□□□□□ -0.92
CLN3-253ENST00000636977 UBE2DNLQ8IWF7 75 aa9.31□□□□□ -0.92
CLN3-253ENST00000636977 CNBPP62633 177 aaKnown RBP9.31□□□□□ -0.92
CLN3-253ENST00000636977 KTN1-AS1Q86SY8 53 aa9.3□□□□□ -0.92
CLN3-253ENST00000636977 A0A1B0GW54 56 aa9.3□□□□□ -0.92
CLN3-253ENST00000636977 APLNQ9ULZ1 77 aa9.3□□□□□ -0.92
CLN3-253ENST00000636977 A0A087WSZ3 146 aa9.28□□□□□ -0.92
CLN3-253ENST00000636977 C4orf48Q5BLP8 95 aa9.27□□□□□ -0.93
CLN3-253ENST00000636977 PANO1I0J062 215 aa9.26□□□□□ -0.93
CLN3-253ENST00000636977 RPL37AP61513 92 aaKnown RBP9.26□□□□□ -0.93
CLN3-253ENST00000636977 Q5VV11 94 aa9.26□□□□□ -0.93
CLN3-253ENST00000636977 PLECQ15149 4684 aaKnown RBP9.25□□□□□ -0.93
CLN3-253ENST00000636977 UBE2AP49459 152 aa9.25□□□□□ -0.93
CLN3-253ENST00000636977 PRR15LQ9BU68 103 aa9.24□□□□□ -0.93
CLN3-253ENST00000636977 HCG22E2RYF7 251 aa9.24□□□□□ -0.93
CLN3-253ENST00000636977 WFDC13Q8IUB5 93 aa9.22□□□□□ -0.93
CLN3-253ENST00000636977 IGLV8-61A0A075B6I0 122 aa9.21□□□□□ -0.94
CLN3-253ENST00000636977 LCE6AA0A183 80 aa9.21□□□□□ -0.94
CLN3-253ENST00000636977 DYNC2H1Q8NCM8 4307 aaKnown RBP9.2□□□□□ -0.94
CLN3-253ENST00000636977 A6NED7 52 aa9.2□□□□□ -0.94
CLN3-253ENST00000636977 C9orf163Q8N9P6 203 aa9.19□□□□□ -0.94
CLN3-253ENST00000636977 MDFIQ99750 246 aa9.17□□□□□ -0.94
CLN3-253ENST00000636977 C14orf177Q52M58 125 aa9.16□□□□□ -0.94
CLN3-253ENST00000636977 ZCCHC13Q8WW36 166 aaKnown RBP9.16□□□□□ -0.94
CLN3-253ENST00000636977 NBDYA0A0U1RRE5 68 aa9.16□□□□□ -0.94
CLN3-253ENST00000636977 LCA10Q71F78 164 aa9.15□□□□□ -0.94
CLN3-253ENST00000636977 Q6ZRN7 208 aaPredicted RBP9.15□□□□□ -0.95
CLN3-253ENST00000636977 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.14□□□□□ -0.95
CLN3-253ENST00000636977 SPRR1BP22528 89 aa9.13□□□□□ -0.95
CLN3-253ENST00000636977 B9D2Q9BPU9 175 aa9.13□□□□□ -0.95
CLN3-253ENST00000636977 STARD9Q9P2P6 4700 aa9.13□□□□□ -0.95
CLN3-253ENST00000636977 H0Y9J4 135 aa9.12□□□□□ -0.95
CLN3-253ENST00000636977 Q8N9P0 234 aaPredicted RBP9.11□□□□□ -0.95
CLN3-253ENST00000636977 LINC00208Q96KT6 92 aa9.11□□□□□ -0.95
CLN3-253ENST00000636977 KRTAP29-1A8MX34 341 aaPredicted RBP9.1□□□□□ -0.95
CLN3-253ENST00000636977 CYP4F30PQ9H0H9 118 aa9.1□□□□□ -0.95
CLN3-253ENST00000636977 KRTAP13-1Q8IUC0 172 aa9.1□□□□□ -0.95
CLN3-253ENST00000636977 LINC00472Q9H8W2 130 aa9.1□□□□□ -0.95
CLN3-253ENST00000636977 NDUFS5O43920 106 aa9.09□□□□□ -0.95
CLN3-253ENST00000636977 ATP11AUNQ6ZP68 121 aa9.08□□□□□ -0.96
CLN3-253ENST00000636977 IGLV9-49A0A0B4J1Y8 123 aa9.08□□□□□ -0.96
CLN3-253ENST00000636977 H3BS24 57 aa9.07□□□□□ -0.96
CLN3-253ENST00000636977 CASC2Q6XLA1 102 aa9.07□□□□□ -0.96
CLN3-253ENST00000636977 A6NN06 94 aa9.06□□□□□ -0.96
CLN3-253ENST00000636977 C8orf87E5RJ46 101 aa9.06□□□□□ -0.96
CLN3-253ENST00000636977 LIMD2Q9BT23 127 aa9.06□□□□□ -0.96
CLN3-253ENST00000636977 PRKDCP78527 4128 aaKnown RBP9.06□□□□□ -0.96
CLN3-253ENST00000636977 KMT2AQ03164 3969 aa9.06□□□□□ -0.96
CLN3-253ENST00000636977 FRAS1Q86XX4 4008 aa9.05□□□□□ -0.96
CLN3-253ENST00000636977 A8MWP4 228 aa9.05□□□□□ -0.96
CLN3-253ENST00000636977 MP68P56378 58 aa9.05□□□□□ -0.96
CLN3-253ENST00000636977 SPACA4Q8TDM5 124 aa9.05□□□□□ -0.96
CLN3-253ENST00000636977 VPS13DQ5THJ4 4388 aa9.04□□□□□ -0.96
CLN3-253ENST00000636977 C7orf65Q6ZTY9 151 aa9.04□□□□□ -0.96
CLN3-253ENST00000636977 HECTD4Q9Y4D8 3996 aa9.04□□□□□ -0.96
CLN3-253ENST00000636977 NDUFB1O75438 58 aa9.03□□□□□ -0.96
CLN3-253ENST00000636977 ANAPC11Q9NYG5 84 aa9.03□□□□□ -0.96
CLN3-253ENST00000636977 NUPR2A6NF83 97 aa9.03□□□□□ -0.96
CLN3-253ENST00000636977 A0A087WTM6 91 aa9□□□□□ -0.97
CLN3-253ENST00000636977 H0Y9P7 68 aa9□□□□□ -0.97
CLN3-253ENST00000636977 PRAC1Q96KF2 57 aa9□□□□□ -0.97
CLN3-253ENST00000636977 DNAH2Q9P225 4427 aa9□□□□□ -0.97
CLN3-253ENST00000636977 Q96NJ1 140 aa8.99□□□□□ -0.97
CLN3-253ENST00000636977 FBN3Q75N90 2809 aa8.99□□□□□ -0.97
CLN3-253ENST00000636977 MMP24-AS1A0A0U1RRL7 71 aa8.99□□□□□ -0.97
CLN3-253ENST00000636977 MOBPQ13875 183 aa8.99□□□□□ -0.97
CLN3-253ENST00000636977 TGP01266 2768 aa8.99□□□□□ -0.97
CLN3-253ENST00000636977 DNAH8Q96JB1 4490 aa8.99□□□□□ -0.97
CLN3-253ENST00000636977 SPAG11AQ6PDA7 123 aa8.97□□□□□ -0.97
CLN3-253ENST00000636977 PSORS1C2Q9UIG4 136 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms