RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SMIM29Q86T20 159 aa12.18□□□□□ -0.46
CLN3-250ENST00000636839 FAT1Q14517 4588 aa12.16□□□□□ -0.46
CLN3-250ENST00000636839 ANAPC11Q9NYG5 84 aa12.16□□□□□ -0.46
CLN3-250ENST00000636839 H3BQ85 93 aa12.15□□□□□ -0.46
CLN3-250ENST00000636839 GHRHP01286 108 aa12.15□□□□□ -0.47
CLN3-250ENST00000636839 RBM3P98179 157 aaKnown RBP12.13□□□□□ -0.47
CLN3-250ENST00000636839 SPRR4Q96PI1 79 aa12.13□□□□□ -0.47
CLN3-250ENST00000636839 JMJD7-PLA2G4BH0Y9G9 81 aa12.12□□□□□ -0.47
CLN3-250ENST00000636839 A0A0G2JQZ4 141 aa12.11□□□□□ -0.47
CLN3-250ENST00000636839 RPL37AP61513 92 aaKnown RBP12.1□□□□□ -0.47
CLN3-250ENST00000636839 SPRR1BP22528 89 aa12.1□□□□□ -0.47
CLN3-250ENST00000636839 TRBV7-4A0A0J9YYF1 115 aa12.06□□□□□ -0.48
CLN3-250ENST00000636839 DSCR8Q96T75 97 aa12.06□□□□□ -0.48
CLN3-250ENST00000636839 KRTAP10-4P60372 401 aaPredicted RBP12.05□□□□□ -0.48
CLN3-250ENST00000636839 Q6ZQT0 140 aa12.05□□□□□ -0.48
CLN3-250ENST00000636839 LINC00483Q53H64 154 aa12.04□□□□□ -0.48
CLN3-250ENST00000636839 HSPG2P98160 4391 aa12.04□□□□□ -0.48
CLN3-250ENST00000636839 RYR1P21817 5038 aa12.04□□□□□ -0.48
CLN3-250ENST00000636839 KIAA1109Q2LD37 5005 aa12.04□□□□□ -0.48
CLN3-250ENST00000636839 LOC110117498A0A087WWA1 95 aa12.03□□□□□ -0.48
CLN3-250ENST00000636839 KRTAP17-1Q9BYP8 105 aa12.03□□□□□ -0.48
CLN3-250ENST00000636839 CDIP1Q9H305 208 aa12.03□□□□□ -0.48
CLN3-250ENST00000636839 ZNF706Q9Y5V0 76 aaPredicted RBP12.03□□□□□ -0.48
CLN3-250ENST00000636839 IGLV9-49A0A0B4J1Y8 123 aa12.02□□□□□ -0.49
CLN3-250ENST00000636839 CCKP06307 115 aa12.02□□□□□ -0.49
CLN3-250ENST00000636839 F8WEM9 126 aa12.01□□□□□ -0.49
CLN3-250ENST00000636839 CDK2AP2O75956 126 aa11.99□□□□□ -0.49
CLN3-250ENST00000636839 IGFL1Q6UW32 110 aa11.98□□□□□ -0.49
CLN3-250ENST00000636839 A0A1W2PNM2 257 aa11.96□□□□□ -0.49
CLN3-250ENST00000636839 IGLV8-61A0A075B6I0 122 aa11.96□□□□□ -0.5
CLN3-250ENST00000636839 KRTAP1-4P0C5Y4 121 aa11.95□□□□□ -0.5
CLN3-250ENST00000636839 C9orf153Q5TBE3 101 aa11.95□□□□□ -0.5
CLN3-250ENST00000636839 A0A087X002 238 aa11.94□□□□□ -0.5
CLN3-250ENST00000636839 MOBPQ13875 183 aa11.94□□□□□ -0.5
CLN3-250ENST00000636839 LINC00846Q9NV44 126 aa11.94□□□□□ -0.5
CLN3-250ENST00000636839 MT-ATP8P03928 68 aa11.93□□□□□ -0.5
CLN3-250ENST00000636839 PDE6GP18545 87 aa11.93□□□□□ -0.5
CLN3-250ENST00000636839 SPINK6Q6UWN8 80 aa11.93□□□□□ -0.5
CLN3-250ENST00000636839 FAM240AA0A1B0GVK7 77 aa11.92□□□□□ -0.5
CLN3-250ENST00000636839 ANAPC13Q9BS18 74 aa11.92□□□□□ -0.5
CLN3-250ENST00000636839 Q5VSD8 79 aa11.89□□□□□ -0.51
CLN3-250ENST00000636839 FAM229AH3BQW9 127 aa11.89□□□□□ -0.51
CLN3-250ENST00000636839 KRTAP13-2Q52LG2 175 aa11.89□□□□□ -0.51
CLN3-250ENST00000636839 Q8NBF4 154 aa11.88□□□□□ -0.51
CLN3-250ENST00000636839 ACYP1P07311 99 aa11.87□□□□□ -0.51
CLN3-250ENST00000636839 Q6Q795 121 aa11.87□□□□□ -0.51
CLN3-250ENST00000636839 PLA2G1BP04054 148 aaKnown RBP11.87□□□□□ -0.51
CLN3-250ENST00000636839 Q6JHZ5 121 aa11.86□□□□□ -0.51
CLN3-250ENST00000636839 HRCT1Q6UXD1 115 aa11.86□□□□□ -0.51
CLN3-250ENST00000636839 CRYGAP11844 174 aa11.82□□□□□ -0.52
CLN3-250ENST00000636839 FAM229BQ4G0N7 80 aa11.81□□□□□ -0.52
CLN3-250ENST00000636839 PRR26Q8N8Z3 221 aa11.8□□□□□ -0.52
CLN3-250ENST00000636839 A0A087WSZ3 146 aa11.79□□□□□ -0.52
CLN3-250ENST00000636839 SS18L2Q9UHA2 77 aa11.77□□□□□ -0.52
CLN3-250ENST00000636839 Q6ZVQ6 151 aa11.77□□□□□ -0.53
CLN3-250ENST00000636839 Q8N1X5 172 aa11.76□□□□□ -0.53
CLN3-250ENST00000636839 PKHD1L1Q86WI1 4243 aa11.75□□□□□ -0.53
CLN3-250ENST00000636839 SSBP3-AS1Q7Z2R9 100 aa11.74□□□□□ -0.53
CLN3-250ENST00000636839 UBL5Q9BZL1 73 aa11.74□□□□□ -0.53
CLN3-250ENST00000636839 LRP1Q07954 4544 aaKnown RBP11.72□□□□□ -0.53
CLN3-250ENST00000636839 IGKV3D-7A0A0C4DH55 119 aa11.72□□□□□ -0.53
CLN3-250ENST00000636839 TRBV7-7A0A0K0K1E9 115 aa11.72□□□□□ -0.53
CLN3-250ENST00000636839 NREPQ16612 68 aa11.71□□□□□ -0.53
CLN3-250ENST00000636839 LINC00643Q86TS7 51 aa11.71□□□□□ -0.53
CLN3-250ENST00000636839 TYMSOSQ8TAI1 123 aa11.71□□□□□ -0.53
CLN3-250ENST00000636839 KRTAP4-5Q9BYR2 181 aa11.69□□□□□ -0.54
CLN3-250ENST00000636839 A0A1B0GW54 56 aa11.69□□□□□ -0.54
CLN3-250ENST00000636839 DEFB116Q30KQ4 102 aa11.69□□□□□ -0.54
CLN3-250ENST00000636839 BIRC6Q9NR09 4857 aa11.69□□□□□ -0.54
CLN3-250ENST00000636839 FLG2Q5D862 2391 aaPredicted RBP11.66□□□□□ -0.54
CLN3-250ENST00000636839 CCDC179H3BU77 68 aa11.62□□□□□ -0.55
CLN3-250ENST00000636839 IMUPQ9GZP8 106 aa11.61□□□□□ -0.55
CLN3-250ENST00000636839 MYCBP2O75592 4640 aa11.61□□□□□ -0.55
CLN3-250ENST00000636839 CD164Q04900 197 aa11.6□□□□□ -0.55
CLN3-250ENST00000636839 Q8N9L7 120 aa11.6□□□□□ -0.55
CLN3-250ENST00000636839 LINC00472Q9H8W2 130 aa11.59□□□□□ -0.55
CLN3-250ENST00000636839 BPY2O14599 106 aa11.59□□□□□ -0.55
CLN3-250ENST00000636839 Q96NJ1 140 aa11.58□□□□□ -0.56
CLN3-250ENST00000636839 SMIM20Q8N5G0 67 aa11.57□□□□□ -0.56
CLN3-250ENST00000636839 FAT3Q8TDW7 4589 aa11.57□□□□□ -0.56
CLN3-250ENST00000636839 LINC00304Q8N9R0 145 aa11.57□□□□□ -0.56
CLN3-250ENST00000636839 DSCR10P59022 87 aa11.55□□□□□ -0.56
CLN3-250ENST00000636839 C4orf48Q5BLP8 95 aa11.55□□□□□ -0.56
CLN3-250ENST00000636839 TNXBP22105 4242 aa11.54□□□□□ -0.56
CLN3-250ENST00000636839 A0A087WVE0 104 aa11.54□□□□□ -0.56
CLN3-250ENST00000636839 CXCL6P80162 114 aa11.54□□□□□ -0.56
CLN3-250ENST00000636839 HIST1H4AP62805 103 aaKnown RBP11.53□□□□□ -0.56
CLN3-250ENST00000636839 ATP5EP2Q5VTU8 51 aa11.53□□□□□ -0.56
CLN3-250ENST00000636839 KRTAP10-8P60410 259 aa11.52□□□□□ -0.56
CLN3-250ENST00000636839 HERC2O95714 4834 aa11.52□□□□□ -0.57
CLN3-250ENST00000636839 ABCA13Q86UQ4 5058 aa11.51□□□□□ -0.57
CLN3-250ENST00000636839 SPINK1P00995 79 aa11.49□□□□□ -0.57
CLN3-250ENST00000636839 K7EQZ3 153 aa11.48□□□□□ -0.57
CLN3-250ENST00000636839 IGKV4-1P06312 121 aa11.48□□□□□ -0.57
CLN3-250ENST00000636839 C1orf195Q5TG92 126 aa11.45□□□□□ -0.58
CLN3-250ENST00000636839 Q5XG85 94 aa11.45□□□□□ -0.58
CLN3-250ENST00000636839 MT1HL1P0DM35 61 aa11.45□□□□□ -0.58
CLN3-250ENST00000636839 UQCRQO14949 82 aa11.44□□□□□ -0.58
CLN3-250ENST00000636839 SPAG11AQ6PDA7 123 aa11.44□□□□□ -0.58
CLN3-250ENST00000636839 ASB16-AS1Q495Z4 193 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms