RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 C20orf166-AS1Q96NR2 134 aa3.35□□□□□ -1.87
SCN1A-209ENST00000635750 MAST4O15021 2626 aa3.33□□□□□ -1.88
SCN1A-209ENST00000635750 STAB1Q9NY15 2570 aa3.32□□□□□ -1.88
SCN1A-209ENST00000635750 PRAC1Q96KF2 57 aa3.32□□□□□ -1.88
SCN1A-209ENST00000635750 LINC00472Q9H8W2 130 aa3.32□□□□□ -1.88
SCN1A-209ENST00000635750 ITPR3Q14573 2671 aa3.32□□□□□ -1.88
SCN1A-209ENST00000635750 FLNAP21333 2647 aaKnown RBP3.32□□□□□ -1.88
SCN1A-209ENST00000635750 SPRR1AP35321 89 aa3.31□□□□□ -1.88
SCN1A-209ENST00000635750 KRTAP10-1P60331 282 aa3.31□□□□□ -1.88
SCN1A-209ENST00000635750 SPRR1BP22528 89 aa3.31□□□□□ -1.88
SCN1A-209ENST00000635750 ATRQ13535 2644 aa3.31□□□□□ -1.88
SCN1A-209ENST00000635750 NBEAL1Q6ZS30 2694 aa3.3□□□□□ -1.88
SCN1A-209ENST00000635750 AKAP13Q12802 2813 aa3.3□□□□□ -1.88
SCN1A-209ENST00000635750 PANO1I0J062 215 aa3.3□□□□□ -1.88
SCN1A-209ENST00000635750 EP400Q96L91 3159 aa3.3□□□□□ -1.88
SCN1A-209ENST00000635750 FLNBO75369 2602 aaKnown RBP3.3□□□□□ -1.88
SCN1A-209ENST00000635750 Q8NDZ9 215 aa3.3□□□□□ -1.88
SCN1A-209ENST00000635750 Q5VV11 94 aa3.3□□□□□ -1.88
SCN1A-209ENST00000635750 HELZ2Q9BYK8 2649 aaKnown RBP3.29□□□□□ -1.88
SCN1A-209ENST00000635750 A8MUU9 505 aa3.29□□□□□ -1.88
SCN1A-209ENST00000635750 Q6ZR54 194 aa3.29□□□□□ -1.88
SCN1A-209ENST00000635750 KRTAP16-1A8MUX0 517 aa3.28□□□□□ -1.88
SCN1A-209ENST00000635750 KRTAP10-2P60368 255 aa3.28□□□□□ -1.88
SCN1A-209ENST00000635750 SPATA8Q6RVD6 105 aa3.28□□□□□ -1.88
SCN1A-209ENST00000635750 ASB16-AS1Q495Z4 193 aa3.28□□□□□ -1.89
SCN1A-209ENST00000635750 KMT2BQ9UMN6 2715 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-209ENST00000635750 KRTAP26-1Q6PEX3 210 aa3.27□□□□□ -1.89
SCN1A-209ENST00000635750 CENPEQ02224 2701 aa3.27□□□□□ -1.89
SCN1A-209ENST00000635750 TNP1P09430 55 aa3.25□□□□□ -1.89
SCN1A-209ENST00000635750 RPS29P62273 56 aaKnown RBP3.24□□□□□ -1.89
SCN1A-209ENST00000635750 TEX15Q9BXT5 2789 aa3.23□□□□□ -1.89
SCN1A-209ENST00000635750 KRTAP1-5Q9BYS1 174 aa3.22□□□□□ -1.89
SCN1A-209ENST00000635750 A0A087X002 238 aa3.2□□□□□ -1.9
SCN1A-209ENST00000635750 Q5XG85 94 aa3.2□□□□□ -1.9
SCN1A-209ENST00000635750 UNC79Q9P2D8 2635 aa3.2□□□□□ -1.9
SCN1A-209ENST00000635750 STAB2Q8WWQ8 2551 aa3.19□□□□□ -1.9
SCN1A-209ENST00000635750 CEP350Q5VT06 3117 aa3.19□□□□□ -1.9
SCN1A-209ENST00000635750 CHD6Q8TD26 2715 aa3.19□□□□□ -1.9
SCN1A-209ENST00000635750 C10orf95Q9H7T3 257 aa3.19□□□□□ -1.9
SCN1A-209ENST00000635750 C5orf42Q9H799 3197 aa3.19□□□□□ -1.9
SCN1A-209ENST00000635750 KRTAP25-1Q3LHN0 102 aa3.17□□□□□ -1.9
SCN1A-209ENST00000635750 COL6A5A8TX70 2615 aa3.17□□□□□ -1.9
SCN1A-209ENST00000635750 P0C880 135 aa3.16□□□□□ -1.9
SCN1A-209ENST00000635750 KRTAP10-8P60410 259 aa3.15□□□□□ -1.91
SCN1A-209ENST00000635750 NOTCH1P46531 2555 aa3.15□□□□□ -1.91
SCN1A-209ENST00000635750 PRO2289Q9P1D8 64 aa3.14□□□□□ -1.91
SCN1A-209ENST00000635750 PP632Q6XCG6 107 aa3.13□□□□□ -1.91
SCN1A-209ENST00000635750 A8MU10 97 aa3.13□□□□□ -1.91
SCN1A-209ENST00000635750 ITPR2Q14571 2701 aa3.13□□□□□ -1.91
SCN1A-209ENST00000635750 NOTCH2NLQ7Z3S9 236 aa3.12□□□□□ -1.91
SCN1A-209ENST00000635750 CYSTM1Q9H1C7 97 aa3.12□□□□□ -1.91
SCN1A-209ENST00000635750 KRTAP4-16G5E9R7 235 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-209ENST00000635750 DNAH12Q6ZR08 3092 aa3.11□□□□□ -1.91
SCN1A-209ENST00000635750 KRTAP29-1A8MX34 341 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-209ENST00000635750 NDUFAF8A1L188 74 aa3.11□□□□□ -1.91
SCN1A-209ENST00000635750 TEP1Q99973 2627 aaKnown RBP3.11□□□□□ -1.91
SCN1A-209ENST00000635750 SETXQ7Z333 2677 aaKnown RBP3.1□□□□□ -1.91
SCN1A-209ENST00000635750 GOLGB1Q14789 3259 aaKnown RBP3.1□□□□□ -1.91
SCN1A-209ENST00000635750 BAHCC1Q9P281 2608 aa3.09□□□□□ -1.91
SCN1A-209ENST00000635750 Q6ZRN7 208 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-209ENST00000635750 KRTAP21-3Q3LHN1 58 aa3.07□□□□□ -1.92
SCN1A-209ENST00000635750 GCN1Q92616 2671 aaKnown RBP3.06□□□□□ -1.92
SCN1A-209ENST00000635750 KRTAP10-10P60014 251 aa3.05□□□□□ -1.92
SCN1A-209ENST00000635750 IGSF10Q6WRI0 2623 aa3.05□□□□□ -1.92
SCN1A-209ENST00000635750 A0A1B0GVY2 172 aa3.04□□□□□ -1.92
SCN1A-209ENST00000635750 KRTAP13-2Q52LG2 175 aa3.04□□□□□ -1.92
SCN1A-209ENST00000635750 A0A0C4DFX4 3053 aa3.04□□□□□ -1.92
SCN1A-209ENST00000635750 APCP25054 2843 aa3.03□□□□□ -1.92
SCN1A-209ENST00000635750 PCNTO95613 3336 aa3.03□□□□□ -1.92
SCN1A-209ENST00000635750 A6NN06 94 aa3.02□□□□□ -1.93
SCN1A-209ENST00000635750 CFAP54Q96N23 3096 aa3.02□□□□□ -1.93
SCN1A-209ENST00000635750 ZNF292O60281 2723 aa3.02□□□□□ -1.93
SCN1A-209ENST00000635750 KRTAP11-1Q8IUC1 163 aa3.01□□□□□ -1.93
SCN1A-209ENST00000635750 UTRNP46939 3433 aa2.99□□□□□ -1.93
SCN1A-209ENST00000635750 NSD1Q96L73 2696 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-209ENST00000635750 TPRXLQ17RH7 258 aa2.98□□□□□ -1.93
SCN1A-209ENST00000635750 XP32Q5T750 250 aa2.97□□□□□ -1.93
SCN1A-209ENST00000635750 KRTAP13-1Q8IUC0 172 aa2.97□□□□□ -1.93
SCN1A-209ENST00000635750 CRYBG3Q68DQ2 2970 aa2.96□□□□□ -1.94
SCN1A-209ENST00000635750 NBEAL2Q6ZNJ1 2754 aa2.95□□□□□ -1.94
SCN1A-209ENST00000635750 FRYQ5TBA9 3013 aa2.95□□□□□ -1.94
SCN1A-209ENST00000635750 LAMA2P24043 3122 aaKnown RBP2.95□□□□□ -1.94
SCN1A-209ENST00000635750 MAP1AP78559 2803 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-209ENST00000635750 MGAQ8IWI9 3026 aa2.93□□□□□ -1.94
SCN1A-209ENST00000635750 WDFY4Q6ZS81 3184 aa2.92□□□□□ -1.94
SCN1A-209ENST00000635750 KRTAP7-1Q8IUC3 87 aa2.91□□□□□ -1.94
SCN1A-209ENST00000635750 UBR5O95071 2799 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-209ENST00000635750 REV3LO60673 3130 aa2.87□□□□□ -1.95
SCN1A-209ENST00000635750 UTP20O75691 2785 aaKnown RBP2.87□□□□□ -1.95
SCN1A-209ENST00000635750 H0YAA0 97 aa2.86□□□□□ -1.95
SCN1A-209ENST00000635750 TRIOO75962 3097 aa2.86□□□□□ -1.95
SCN1A-209ENST00000635750 XIRP2A4UGR9 3374 aa2.85□□□□□ -1.95
SCN1A-209ENST00000635750 TRANK1O15050 2925 aa2.85□□□□□ -1.95
SCN1A-209ENST00000635750 KRTAP1-4P0C5Y4 121 aa2.84□□□□□ -1.96
SCN1A-209ENST00000635750 PRUNE2Q8WUY3 3088 aa2.84□□□□□ -1.96
SCN1A-209ENST00000635750 KRTAP13-3Q3SY46 172 aa2.84□□□□□ -1.96
SCN1A-209ENST00000635750 TENM1Q9UKZ4 2725 aa2.83□□□□□ -1.96
SCN1A-209ENST00000635750 CHD7Q9P2D1 2997 aa2.82□□□□□ -1.96
SCN1A-209ENST00000635750 UNC80Q8N2C7 3258 aa2.82□□□□□ -1.96
SCN1A-209ENST00000635750 CELSR3Q9NYQ7 3312 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms