RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 LYSTQ99698 3801 aa9.77□□□□□ -0.85
CPSF1-213ENST00000620219 ATOX1O00244 68 aa9.77□□□□□ -0.85
CPSF1-213ENST00000620219 ATP5EP2Q5VTU8 51 aa9.77□□□□□ -0.85
CPSF1-213ENST00000620219 Q8NBF4 154 aa9.76□□□□□ -0.85
CPSF1-213ENST00000620219 NDUFS5O43920 106 aa9.76□□□□□ -0.85
CPSF1-213ENST00000620219 NDUFB1O75438 58 aa9.76□□□□□ -0.85
CPSF1-213ENST00000620219 WFDC13Q8IUB5 93 aa9.76□□□□□ -0.85
CPSF1-213ENST00000620219 ZNF861PO60384 105 aa9.76□□□□□ -0.85
CPSF1-213ENST00000620219 SS18L2Q9UHA2 77 aa9.75□□□□□ -0.85
CPSF1-213ENST00000620219 KRTAP10-1P60331 282 aa9.74□□□□□ -0.85
CPSF1-213ENST00000620219 IGFL1Q6UW32 110 aa9.74□□□□□ -0.85
CPSF1-213ENST00000620219 PRKDCP78527 4128 aaKnown RBP9.74□□□□□ -0.85
CPSF1-213ENST00000620219 KRTAP4-16G5E9R7 235 aaPredicted RBP9.72□□□□□ -0.85
CPSF1-213ENST00000620219 DNAH3Q8TD57 4116 aa9.72□□□□□ -0.85
CPSF1-213ENST00000620219 IGLV7-43P04211 117 aa9.71□□□□□ -0.85
CPSF1-213ENST00000620219 DNAH10Q8IVF4 4471 aa9.71□□□□□ -0.85
CPSF1-213ENST00000620219 LCE6AA0A183 80 aa9.71□□□□□ -0.86
CPSF1-213ENST00000620219 A0A1W2PNM2 257 aa9.71□□□□□ -0.86
CPSF1-213ENST00000620219 PLAC8Q9NZF1 115 aa9.71□□□□□ -0.86
CPSF1-213ENST00000620219 C20orf197Q8N268 126 aa9.68□□□□□ -0.86
CPSF1-213ENST00000620219 IGKV4-1P06312 121 aa9.68□□□□□ -0.86
CPSF1-213ENST00000620219 LINC00336Q6ZUF6 198 aa9.68□□□□□ -0.86
CPSF1-213ENST00000620219 SPRR4Q96PI1 79 aa9.68□□□□□ -0.86
CPSF1-213ENST00000620219 PLECQ15149 4684 aaKnown RBP9.67□□□□□ -0.86
CPSF1-213ENST00000620219 IGLV5-48A0A075B6I7 105 aa9.67□□□□□ -0.86
CPSF1-213ENST00000620219 RPL37AP61513 92 aaKnown RBP9.67□□□□□ -0.86
CPSF1-213ENST00000620219 SMIM20Q8N5G0 67 aa9.66□□□□□ -0.86
CPSF1-213ENST00000620219 PLA2G1BP04054 148 aaKnown RBP9.64□□□□□ -0.87
CPSF1-213ENST00000620219 UQCRQO14949 82 aa9.63□□□□□ -0.87
CPSF1-213ENST00000620219 SERP2Q8N6R1 65 aa9.63□□□□□ -0.87
CPSF1-213ENST00000620219 SNURFQ9Y675 71 aa9.62□□□□□ -0.87
CPSF1-213ENST00000620219 IGHV6-1A0A0B4J1U7 121 aa9.62□□□□□ -0.87
CPSF1-213ENST00000620219 COX7CP15954 63 aa9.62□□□□□ -0.87
CPSF1-213ENST00000620219 SMIM29Q86T20 159 aa9.61□□□□□ -0.87
CPSF1-213ENST00000620219 CRYGAP11844 174 aa9.61□□□□□ -0.87
CPSF1-213ENST00000620219 CXCL6P80162 114 aa9.61□□□□□ -0.87
CPSF1-213ENST00000620219 STARD9Q9P2P6 4700 aa9.6□□□□□ -0.87
CPSF1-213ENST00000620219 TYMSOSQ8TAI1 123 aa9.56□□□□□ -0.88
CPSF1-213ENST00000620219 FLG2Q5D862 2391 aaPredicted RBP9.56□□□□□ -0.88
CPSF1-213ENST00000620219 K7EQZ3 153 aa9.56□□□□□ -0.88
CPSF1-213ENST00000620219 FAM229AH3BQW9 127 aa9.54□□□□□ -0.88
CPSF1-213ENST00000620219 DNAH7Q8WXX0 4024 aa9.54□□□□□ -0.88
CPSF1-213ENST00000620219 DMBT1Q9UGM3 2413 aaPredicted RBP9.53□□□□□ -0.88
CPSF1-213ENST00000620219 CASC2Q6XLA1 102 aa9.52□□□□□ -0.89
CPSF1-213ENST00000620219 A0A1B0GW54 56 aa9.5□□□□□ -0.89
CPSF1-213ENST00000620219 HCG22E2RYF7 251 aa9.5□□□□□ -0.89
CPSF1-213ENST00000620219 MP68P56378 58 aa9.5□□□□□ -0.89
CPSF1-213ENST00000620219 TRAV7A0A075B6U4 112 aa9.48□□□□□ -0.89
CPSF1-213ENST00000620219 RETNLBQ9BQ08 111 aa9.46□□□□□ -0.89
CPSF1-213ENST00000620219 SPRR1BP22528 89 aa9.45□□□□□ -0.9
CPSF1-213ENST00000620219 J3KT08 172 aa9.45□□□□□ -0.9
CPSF1-213ENST00000620219 PRR26Q8N8Z3 221 aa9.45□□□□□ -0.9
CPSF1-213ENST00000620219 KMT2AQ03164 3969 aa9.44□□□□□ -0.9
CPSF1-213ENST00000620219 SSBP3-AS1Q7Z2R9 100 aa9.44□□□□□ -0.9
CPSF1-213ENST00000620219 DSCR10P59022 87 aa9.43□□□□□ -0.9
CPSF1-213ENST00000620219 PRR4Q16378 134 aa9.42□□□□□ -0.9
CPSF1-213ENST00000620219 CYSTM1Q9H1C7 97 aa9.41□□□□□ -0.9
CPSF1-213ENST00000620219 KRTAP13-1Q8IUC0 172 aa9.41□□□□□ -0.9
CPSF1-213ENST00000620219 LINC00208Q96KT6 92 aa9.4□□□□□ -0.9
CPSF1-213ENST00000620219 LIMD2Q9BT23 127 aa9.4□□□□□ -0.9
CPSF1-213ENST00000620219 A8MWP4 228 aa9.4□□□□□ -0.91
CPSF1-213ENST00000620219 hDV103S1A0JD37 113 aa9.39□□□□□ -0.91
CPSF1-213ENST00000620219 A0A087X002 238 aa9.39□□□□□ -0.91
CPSF1-213ENST00000620219 TMEM254Q8TBM7 123 aa9.39□□□□□ -0.91
CPSF1-213ENST00000620219 IGLV8-61A0A075B6I0 122 aa9.38□□□□□ -0.91
CPSF1-213ENST00000620219 PRR15Q8IV56 129 aa9.37□□□□□ -0.91
CPSF1-213ENST00000620219 DNAH1Q9P2D7 4330 aa9.36□□□□□ -0.91
CPSF1-213ENST00000620219 LINC00304Q8N9R0 145 aa9.36□□□□□ -0.91
CPSF1-213ENST00000620219 C5orf47Q569G3 176 aa9.33□□□□□ -0.92
CPSF1-213ENST00000620219 LINC00483Q53H64 154 aa9.32□□□□□ -0.92
CPSF1-213ENST00000620219 Q6ZSA8 131 aa9.32□□□□□ -0.92
CPSF1-213ENST00000620219 VPS13DQ5THJ4 4388 aa9.31□□□□□ -0.92
CPSF1-213ENST00000620219 FAM236DA0A1B0GTK5 79 aa9.31□□□□□ -0.92
CPSF1-213ENST00000620219 H0Y9P7 68 aa9.31□□□□□ -0.92
CPSF1-213ENST00000620219 FAM236CP0DP71 79 aa9.31□□□□□ -0.92
CPSF1-213ENST00000620219 PCOTHQ58A44 107 aa9.29□□□□□ -0.92
CPSF1-213ENST00000620219 A0A1B0GVX0 72 aa9.29□□□□□ -0.92
CPSF1-213ENST00000620219 LINC00313P59037 77 aa9.29□□□□□ -0.92
CPSF1-213ENST00000620219 TMEM258P61165 79 aa9.29□□□□□ -0.92
CPSF1-213ENST00000620219 C8orf17Q9NRJ1 99 aa9.28□□□□□ -0.92
CPSF1-213ENST00000620219 LINC00472Q9H8W2 130 aa9.27□□□□□ -0.93
CPSF1-213ENST00000620219 Q5VSD8 79 aa9.26□□□□□ -0.93
CPSF1-213ENST00000620219 FAM229BQ4G0N7 80 aa9.25□□□□□ -0.93
CPSF1-213ENST00000620219 OCR1Q9BZK8 76 aa9.25□□□□□ -0.93
CPSF1-213ENST00000620219 C9orf92A6NGG3 77 aa9.24□□□□□ -0.93
CPSF1-213ENST00000620219 Q96NJ1 140 aa9.23□□□□□ -0.93
CPSF1-213ENST00000620219 KRTAP13-2Q52LG2 175 aa9.23□□□□□ -0.93
CPSF1-213ENST00000620219 C1orf64Q8NEQ6 169 aa9.22□□□□□ -0.93
CPSF1-213ENST00000620219 MRPL34Q9BQ48 92 aaKnown RBP9.22□□□□□ -0.93
CPSF1-213ENST00000620219 DNAH11Q96DT5 4516 aa9.21□□□□□ -0.93
CPSF1-213ENST00000620219 SPINK1P00995 79 aa9.21□□□□□ -0.93
CPSF1-213ENST00000620219 H7BZZ5 65 aa9.19□□□□□ -0.94
CPSF1-213ENST00000620219 IGKV2D-30A0A075B6S6 120 aa9.18□□□□□ -0.94
CPSF1-213ENST00000620219 IGKV2-30P06310 120 aa9.18□□□□□ -0.94
CPSF1-213ENST00000620219 CD164Q04900 197 aa9.18□□□□□ -0.94
CPSF1-213ENST00000620219 TRAV22A0A0B4J277 110 aa9.18□□□□□ -0.94
CPSF1-213ENST00000620219 SPAG11AQ6PDA7 123 aa9.18□□□□□ -0.94
CPSF1-213ENST00000620219 KLKP1Q107X0 134 aa9.17□□□□□ -0.94
CPSF1-213ENST00000620219 NDUFC1O43677 76 aa9.17□□□□□ -0.94
CPSF1-213ENST00000620219 DNAH2Q9P225 4427 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms