RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 C5orf42Q9H799 3197 aa12.39□□□□□ -0.43
UPF1-207ENST00000599848 ITPR3Q14573 2671 aa12.38□□□□□ -0.43
UPF1-207ENST00000599848 CHD7Q9P2D1 2997 aa12.38□□□□□ -0.43
UPF1-207ENST00000599848 Q5W150 140 aa12.36□□□□□ -0.43
UPF1-207ENST00000599848 CR1P17927 2039 aa12.35□□□□□ -0.43
UPF1-207ENST00000599848 LINC00472Q9H8W2 130 aa12.32□□□□□ -0.44
UPF1-207ENST00000599848 Q6ZR54 194 aa12.3□□□□□ -0.44
UPF1-207ENST00000599848 KRTAP10-2P60368 255 aa12.29□□□□□ -0.44
UPF1-207ENST00000599848 Q8N9P0 234 aaPredicted RBP12.29□□□□□ -0.44
UPF1-207ENST00000599848 KRTAP1-5Q9BYS1 174 aa12.29□□□□□ -0.44
UPF1-207ENST00000599848 LINC01558Q9Y6Z2 57 aa12.28□□□□□ -0.44
UPF1-207ENST00000599848 Q75L30 129 aa12.26□□□□□ -0.45
UPF1-207ENST00000599848 RANBP2P49792 3224 aaKnown RBP12.25□□□□□ -0.45
UPF1-207ENST00000599848 RPS29P62273 56 aaKnown RBP12.24□□□□□ -0.45
UPF1-207ENST00000599848 M0QZ58 72 aa12.21□□□□□ -0.45
UPF1-207ENST00000599848 BPTFQ12830 3046 aa12.18□□□□□ -0.46
UPF1-207ENST00000599848 KRTAP26-1Q6PEX3 210 aa12.17□□□□□ -0.46
UPF1-207ENST00000599848 HTTP42858 3142 aa12.17□□□□□ -0.46
UPF1-207ENST00000599848 RPL37P61927 97 aaKnown RBP12.16□□□□□ -0.46
UPF1-207ENST00000599848 FLG2Q5D862 2391 aaPredicted RBP12.15□□□□□ -0.46
UPF1-207ENST00000599848 CHD9Q3L8U1 2897 aa12.11□□□□□ -0.47
UPF1-207ENST00000599848 CFAP46Q8IYW2 2715 aa12.11□□□□□ -0.47
UPF1-207ENST00000599848 A0A0A0MQY5 61 aa12.08□□□□□ -0.47
UPF1-207ENST00000599848 LAMA3Q16787 3333 aa12.08□□□□□ -0.48
UPF1-207ENST00000599848 MKI67P46013 3256 aaKnown RBP12.07□□□□□ -0.48
UPF1-207ENST00000599848 SETXQ7Z333 2677 aaKnown RBP12.04□□□□□ -0.48
UPF1-207ENST00000599848 ASB16-AS1Q495Z4 193 aa12.01□□□□□ -0.49
UPF1-207ENST00000599848 BRCA2P51587 3418 aa12.01□□□□□ -0.49
UPF1-207ENST00000599848 Q8NDZ9 215 aa12.01□□□□□ -0.49
UPF1-207ENST00000599848 H1FX-AS1Q4G0G2 97 aa12□□□□□ -0.49
UPF1-207ENST00000599848 CENPEQ02224 2701 aa11.99□□□□□ -0.49
UPF1-207ENST00000599848 ROMO1P60602 79 aa11.96□□□□□ -0.49
UPF1-207ENST00000599848 ADM2Q7Z4H4 148 aa11.95□□□□□ -0.5
UPF1-207ENST00000599848 TEP1Q99973 2627 aaKnown RBP11.93□□□□□ -0.5
UPF1-207ENST00000599848 PANO1I0J062 215 aa11.93□□□□□ -0.5
UPF1-207ENST00000599848 CFAP54Q96N23 3096 aa11.93□□□□□ -0.5
UPF1-207ENST00000599848 A0A0C4DFX4 3053 aa11.91□□□□□ -0.5
UPF1-207ENST00000599848 LAMA2P24043 3122 aaKnown RBP11.9□□□□□ -0.5
UPF1-207ENST00000599848 KRTAP4-16G5E9R7 235 aaPredicted RBP11.86□□□□□ -0.51
UPF1-207ENST00000599848 A0A087X002 238 aa11.85□□□□□ -0.51
UPF1-207ENST00000599848 BAHCC1Q9P281 2608 aa11.83□□□□□ -0.52
UPF1-207ENST00000599848 Q5XG85 94 aa11.83□□□□□ -0.52
UPF1-207ENST00000599848 PRUNE2Q8WUY3 3088 aa11.82□□□□□ -0.52
UPF1-207ENST00000599848 TRANK1O15050 2925 aa11.81□□□□□ -0.52
UPF1-207ENST00000599848 MGAQ8IWI9 3026 aa11.81□□□□□ -0.52
UPF1-207ENST00000599848 COL6A5A8TX70 2615 aa11.81□□□□□ -0.52
UPF1-207ENST00000599848 Q6ZRN7 208 aaPredicted RBP11.79□□□□□ -0.52
UPF1-207ENST00000599848 NBEAL1Q6ZS30 2694 aa11.79□□□□□ -0.52
UPF1-207ENST00000599848 UNC80Q8N2C7 3258 aa11.77□□□□□ -0.53
UPF1-207ENST00000599848 WDFY4Q6ZS81 3184 aa11.75□□□□□ -0.53
UPF1-207ENST00000599848 C20orf166-AS1Q96NR2 134 aa11.73□□□□□ -0.53
UPF1-207ENST00000599848 TEX15Q9BXT5 2789 aa11.71□□□□□ -0.53
UPF1-207ENST00000599848 Q5VV11 94 aa11.7□□□□□ -0.54
UPF1-207ENST00000599848 A8MUU9 505 aa11.69□□□□□ -0.54
UPF1-207ENST00000599848 KRTAP29-1A8MX34 341 aaPredicted RBP11.67□□□□□ -0.54
UPF1-207ENST00000599848 XIRP2A4UGR9 3374 aa11.67□□□□□ -0.54
UPF1-207ENST00000599848 DMBT1Q9UGM3 2413 aaPredicted RBP11.67□□□□□ -0.54
UPF1-207ENST00000599848 ZNF292O60281 2723 aa11.64□□□□□ -0.55
UPF1-207ENST00000599848 UNC79Q9P2D8 2635 aa11.64□□□□□ -0.55
UPF1-207ENST00000599848 AKAP13Q12802 2813 aa11.61□□□□□ -0.55
UPF1-207ENST00000599848 TRIOO75962 3097 aa11.56□□□□□ -0.56
UPF1-207ENST00000599848 MAP1AP78559 2803 aaPredicted RBP11.54□□□□□ -0.56
UPF1-207ENST00000599848 CHD6Q8TD26 2715 aa11.53□□□□□ -0.56
UPF1-207ENST00000599848 CDH23Q9H251 3354 aa11.5□□□□□ -0.57
UPF1-207ENST00000599848 VPS13AQ96RL7 3174 aa11.5□□□□□ -0.57
UPF1-207ENST00000599848 SPATA8Q6RVD6 105 aa11.5□□□□□ -0.57
UPF1-207ENST00000599848 KRTAP13-2Q52LG2 175 aa11.5□□□□□ -0.57
UPF1-207ENST00000599848 NOTCH2NLQ7Z3S9 236 aa11.5□□□□□ -0.57
UPF1-207ENST00000599848 PRAC1Q96KF2 57 aa11.5□□□□□ -0.57
UPF1-207ENST00000599848 DSPP15924 2871 aaKnown RBP11.49□□□□□ -0.57
UPF1-207ENST00000599848 STAB2Q8WWQ8 2551 aa11.48□□□□□ -0.57
UPF1-207ENST00000599848 TNP1P09430 55 aa11.47□□□□□ -0.57
UPF1-207ENST00000599848 KRTAP13-1Q8IUC0 172 aa11.46□□□□□ -0.58
UPF1-207ENST00000599848 NOTCH1P46531 2555 aa11.44□□□□□ -0.58
UPF1-207ENST00000599848 NSD1Q96L73 2696 aaPredicted RBP11.41□□□□□ -0.58
UPF1-207ENST00000599848 KRTAP11-1Q8IUC1 163 aa11.34□□□□□ -0.59
UPF1-207ENST00000599848 FRYQ5TBA9 3013 aa11.32□□□□□ -0.6
UPF1-207ENST00000599848 CELSR3Q9NYQ7 3312 aa11.31□□□□□ -0.6
UPF1-207ENST00000599848 GCN1Q92616 2671 aaKnown RBP11.27□□□□□ -0.6
UPF1-207ENST00000599848 KMT2BQ9UMN6 2715 aaPredicted RBP11.26□□□□□ -0.61
UPF1-207ENST00000599848 SZT2Q5T011 3432 aa11.24□□□□□ -0.61
UPF1-207ENST00000599848 CYSTM1Q9H1C7 97 aa11.23□□□□□ -0.61
UPF1-207ENST00000599848 TPRXLQ17RH7 258 aa11.22□□□□□ -0.61
UPF1-207ENST00000599848 KRTAP7-1Q8IUC3 87 aa11.22□□□□□ -0.61
UPF1-207ENST00000599848 FREM2Q5SZK8 3169 aa11.22□□□□□ -0.61
UPF1-207ENST00000599848 IGSF10Q6WRI0 2623 aa11.21□□□□□ -0.61
UPF1-207ENST00000599848 VCANP13611 3396 aa11.19□□□□□ -0.62
UPF1-207ENST00000599848 LAMA1P25391 3075 aa11.19□□□□□ -0.62
UPF1-207ENST00000599848 PRO2289Q9P1D8 64 aa11.17□□□□□ -0.62
UPF1-207ENST00000599848 PP632Q6XCG6 107 aa11.17□□□□□ -0.62
UPF1-207ENST00000599848 NBEAL2Q6ZNJ1 2754 aa11.15□□□□□ -0.62
UPF1-207ENST00000599848 ITPR2Q14571 2701 aa11.14□□□□□ -0.63
UPF1-207ENST00000599848 UBR5O95071 2799 aaPredicted RBP11.14□□□□□ -0.63
UPF1-207ENST00000599848 DNAH14Q0VDD8 3507 aa11.11□□□□□ -0.63
UPF1-207ENST00000599848 XP32Q5T750 250 aa11.11□□□□□ -0.63
UPF1-207ENST00000599848 KRTAP25-1Q3LHN0 102 aa11.07□□□□□ -0.64
UPF1-207ENST00000599848 KRTAP10-8P60410 259 aa11.07□□□□□ -0.64
UPF1-207ENST00000599848 A8MU10 97 aa11.06□□□□□ -0.64
UPF1-207ENST00000599848 NBEAQ8NFP9 2946 aa11.04□□□□□ -0.64
UPF1-207ENST00000599848 ATMQ13315 3056 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms