RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 ANAPC13Q9BS18 74 aa12.17□□□□□ -0.46
TRIM47-204ENST00000587339 SMIM29Q86T20 159 aa12.17□□□□□ -0.46
TRIM47-204ENST00000587339 F8WEM9 126 aa12.14□□□□□ -0.47
TRIM47-204ENST00000587339 HAMPP81172 84 aa12.14□□□□□ -0.47
TRIM47-204ENST00000587339 SRRM2Q9UQ35 2752 aaKnown RBP12.14□□□□□ -0.47
TRIM47-204ENST00000587339 KMT2CQ8NEZ4 4911 aaKnown RBP12.13□□□□□ -0.47
TRIM47-204ENST00000587339 ZNF861PO60384 105 aa12.13□□□□□ -0.47
TRIM47-204ENST00000587339 SPRR1BP22528 89 aa12.13□□□□□ -0.47
TRIM47-204ENST00000587339 LINC00643Q86TS7 51 aa12.12□□□□□ -0.47
TRIM47-204ENST00000587339 Q6Q795 121 aa12.11□□□□□ -0.47
TRIM47-204ENST00000587339 RYR2Q92736 4967 aa12.11□□□□□ -0.47
TRIM47-204ENST00000587339 A0A1B0GVY2 172 aa12.09□□□□□ -0.47
TRIM47-204ENST00000587339 IGLV7-43P04211 117 aa12.09□□□□□ -0.47
TRIM47-204ENST00000587339 UBL5Q9BZL1 73 aa12.07□□□□□ -0.48
TRIM47-204ENST00000587339 ZNF706Q9Y5V0 76 aaPredicted RBP12.07□□□□□ -0.48
TRIM47-204ENST00000587339 SPRR4Q96PI1 79 aa12.06□□□□□ -0.48
TRIM47-204ENST00000587339 IGLV8-61A0A075B6I0 122 aa12.04□□□□□ -0.48
TRIM47-204ENST00000587339 PKHD1P08F94 4074 aa12.04□□□□□ -0.48
TRIM47-204ENST00000587339 A0A1W2PNM2 257 aa12.02□□□□□ -0.49
TRIM47-204ENST00000587339 LINC00483Q53H64 154 aa12.01□□□□□ -0.49
TRIM47-204ENST00000587339 IGFL1Q6UW32 110 aa12.01□□□□□ -0.49
TRIM47-204ENST00000587339 Q8NBF4 154 aa12.01□□□□□ -0.49
TRIM47-204ENST00000587339 SS18L2Q9UHA2 77 aa12.01□□□□□ -0.49
TRIM47-204ENST00000587339 Q6JHZ5 121 aa11.99□□□□□ -0.49
TRIM47-204ENST00000587339 Q6ZVQ6 151 aa11.99□□□□□ -0.49
TRIM47-204ENST00000587339 TRBV7-7A0A0K0K1E9 115 aa11.99□□□□□ -0.49
TRIM47-204ENST00000587339 A0A1B0GW54 56 aa11.99□□□□□ -0.49
TRIM47-204ENST00000587339 LRP1BQ9NZR2 4599 aa11.99□□□□□ -0.49
TRIM47-204ENST00000587339 A0A0G2JQZ4 141 aa11.98□□□□□ -0.49
TRIM47-204ENST00000587339 IGKV3D-7A0A0C4DH55 119 aa11.96□□□□□ -0.49
TRIM47-204ENST00000587339 IMUPQ9GZP8 106 aa11.96□□□□□ -0.49
TRIM47-204ENST00000587339 IGLV9-49A0A0B4J1Y8 123 aa11.95□□□□□ -0.5
TRIM47-204ENST00000587339 CRYGAP11844 174 aa11.94□□□□□ -0.5
TRIM47-204ENST00000587339 ATP5EP2Q5VTU8 51 aa11.94□□□□□ -0.5
TRIM47-204ENST00000587339 CCDC179H3BU77 68 aa11.94□□□□□ -0.5
TRIM47-204ENST00000587339 ANAPC11Q9NYG5 84 aa11.93□□□□□ -0.5
TRIM47-204ENST00000587339 NREPQ16612 68 aa11.92□□□□□ -0.5
TRIM47-204ENST00000587339 C9orf153Q5TBE3 101 aa11.92□□□□□ -0.5
TRIM47-204ENST00000587339 DYNC1H1Q14204 4646 aaKnown RBP11.89□□□□□ -0.51
TRIM47-204ENST00000587339 RPL37AP61513 92 aaKnown RBP11.87□□□□□ -0.51
TRIM47-204ENST00000587339 CXCL6P80162 114 aa11.86□□□□□ -0.51
TRIM47-204ENST00000587339 MOBPQ13875 183 aa11.86□□□□□ -0.51
TRIM47-204ENST00000587339 A0A087WSZ3 146 aa11.85□□□□□ -0.51
TRIM47-204ENST00000587339 HIST1H4AP62805 103 aaKnown RBP11.85□□□□□ -0.51
TRIM47-204ENST00000587339 RYR3Q15413 4870 aa11.84□□□□□ -0.51
TRIM47-204ENST00000587339 SMR3BP02814 79 aaPredicted RBP11.84□□□□□ -0.51
TRIM47-204ENST00000587339 VPS13BQ7Z7G8 4022 aa11.81□□□□□ -0.52
TRIM47-204ENST00000587339 BPY2O14599 106 aa11.8□□□□□ -0.52
TRIM47-204ENST00000587339 A0A087WVE0 104 aa11.8□□□□□ -0.52
TRIM47-204ENST00000587339 FAM236AA0A1B0GUQ0 79 aa11.79□□□□□ -0.52
TRIM47-204ENST00000587339 FAM236BA0A1B0GV22 79 aa11.79□□□□□ -0.52
TRIM47-204ENST00000587339 APOBP04114 4563 aaKnown RBP11.76□□□□□ -0.53
TRIM47-204ENST00000587339 SMIM20Q8N5G0 67 aa11.76□□□□□ -0.53
TRIM47-204ENST00000587339 SPINK6Q6UWN8 80 aa11.75□□□□□ -0.53
TRIM47-204ENST00000587339 HRCT1Q6UXD1 115 aa11.75□□□□□ -0.53
TRIM47-204ENST00000587339 A0A087X002 238 aa11.74□□□□□ -0.53
TRIM47-204ENST00000587339 FAM229BQ4G0N7 80 aa11.74□□□□□ -0.53
TRIM47-204ENST00000587339 KRTAP1-4P0C5Y4 121 aa11.74□□□□□ -0.53
TRIM47-204ENST00000587339 SSBP3-AS1Q7Z2R9 100 aa11.73□□□□□ -0.53
TRIM47-204ENST00000587339 Q8N9L7 120 aa11.71□□□□□ -0.53
TRIM47-204ENST00000587339 PLA2G1BP04054 148 aaKnown RBP11.69□□□□□ -0.54
TRIM47-204ENST00000587339 DEFB116Q30KQ4 102 aa11.69□□□□□ -0.54
TRIM47-204ENST00000587339 KRTAP13-2Q52LG2 175 aa11.69□□□□□ -0.54
TRIM47-204ENST00000587339 UQCRQO14949 82 aa11.67□□□□□ -0.54
TRIM47-204ENST00000587339 DSCR10P59022 87 aa11.67□□□□□ -0.54
TRIM47-204ENST00000587339 IGKV4-1P06312 121 aa11.66□□□□□ -0.54
TRIM47-204ENST00000587339 KRTAP10-4P60372 401 aaPredicted RBP11.66□□□□□ -0.54
TRIM47-204ENST00000587339 LINC00472Q9H8W2 130 aa11.66□□□□□ -0.54
TRIM47-204ENST00000587339 CD164Q04900 197 aa11.64□□□□□ -0.55
TRIM47-204ENST00000587339 FAT1Q14517 4588 aa11.64□□□□□ -0.55
TRIM47-204ENST00000587339 CDK2AP2O75956 126 aa11.62□□□□□ -0.55
TRIM47-204ENST00000587339 K7EQZ3 153 aa11.62□□□□□ -0.55
TRIM47-204ENST00000587339 ATOX1O00244 68 aa11.62□□□□□ -0.55
TRIM47-204ENST00000587339 COX7CP15954 63 aa11.6□□□□□ -0.55
TRIM47-204ENST00000587339 FAM229AH3BQW9 127 aa11.59□□□□□ -0.55
TRIM47-204ENST00000587339 J3KT08 172 aa11.58□□□□□ -0.56
TRIM47-204ENST00000587339 TYMSOSQ8TAI1 123 aa11.58□□□□□ -0.56
TRIM47-204ENST00000587339 Q96NJ1 140 aa11.58□□□□□ -0.56
TRIM47-204ENST00000587339 A8MWP4 228 aa11.54□□□□□ -0.56
TRIM47-204ENST00000587339 PRR26Q8N8Z3 221 aa11.54□□□□□ -0.56
TRIM47-204ENST00000587339 PRR15Q8IV56 129 aa11.51□□□□□ -0.57
TRIM47-204ENST00000587339 NDUFB1O75438 58 aa11.5□□□□□ -0.57
TRIM47-204ENST00000587339 C4orf48Q5BLP8 95 aa11.5□□□□□ -0.57
TRIM47-204ENST00000587339 Q5VSD8 79 aa11.5□□□□□ -0.57
TRIM47-204ENST00000587339 HCG22E2RYF7 251 aa11.48□□□□□ -0.57
TRIM47-204ENST00000587339 ASB16-AS1Q495Z4 193 aa11.48□□□□□ -0.57
TRIM47-204ENST00000587339 Q5XG85 94 aa11.47□□□□□ -0.57
TRIM47-204ENST00000587339 SERP2Q8N6R1 65 aa11.47□□□□□ -0.57
TRIM47-204ENST00000587339 HSPG2P98160 4391 aa11.47□□□□□ -0.57
TRIM47-204ENST00000587339 RPS28P62857 69 aaKnown RBP11.45□□□□□ -0.58
TRIM47-204ENST00000587339 LIMD2Q9BT23 127 aa11.45□□□□□ -0.58
TRIM47-204ENST00000587339 SPINK1P00995 79 aa11.45□□□□□ -0.58
TRIM47-204ENST00000587339 LINC00304Q8N9R0 145 aa11.43□□□□□ -0.58
TRIM47-204ENST00000587339 RYR1P21817 5038 aa11.42□□□□□ -0.58
TRIM47-204ENST00000587339 WFDC13Q8IUB5 93 aa11.42□□□□□ -0.58
TRIM47-204ENST00000587339 EPPK1P58107 5090 aaKnown RBP11.42□□□□□ -0.58
TRIM47-204ENST00000587339 TMEM258P61165 79 aa11.41□□□□□ -0.58
TRIM47-204ENST00000587339 TRAV7A0A075B6U4 112 aa11.41□□□□□ -0.58
TRIM47-204ENST00000587339 A0A1B0GVX0 72 aa11.4□□□□□ -0.58
TRIM47-204ENST00000587339 SPAG11AQ6PDA7 123 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 147.6 ms