RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 B5MCH6 92 aa6.34□□□□□ -1.39
SS18-207ENST00000577636 SPRR1AP35321 89 aa6.34□□□□□ -1.39
SS18-207ENST00000577636 MT1HL1P0DM35 61 aa6.33□□□□□ -1.4
SS18-207ENST00000577636 LORP23490 312 aaPredicted RBP6.33□□□□□ -1.4
SS18-207ENST00000577636 PHF5AQ7RTV0 110 aaKnown RBP6.33□□□□□ -1.4
SS18-207ENST00000577636 FAM19A1Q7Z5A9 133 aa6.33□□□□□ -1.4
SS18-207ENST00000577636 PKHD1L1Q86WI1 4243 aa6.32□□□□□ -1.4
SS18-207ENST00000577636 KRTAP4-16G5E9R7 235 aaPredicted RBP6.31□□□□□ -1.4
SS18-207ENST00000577636 ACYP1P07311 99 aa6.31□□□□□ -1.4
SS18-207ENST00000577636 UBE2AP49459 152 aa6.31□□□□□ -1.4
SS18-207ENST00000577636 C21orf62-AS1Q17RA5 79 aa6.31□□□□□ -1.4
SS18-207ENST00000577636 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.31□□□□□ -1.4
SS18-207ENST00000577636 RBM3P98179 157 aaKnown RBP6.3□□□□□ -1.4
SS18-207ENST00000577636 FAM240AA0A1B0GVK7 77 aa6.29□□□□□ -1.4
SS18-207ENST00000577636 H0Y9J4 135 aa6.29□□□□□ -1.4
SS18-207ENST00000577636 PANO1I0J062 215 aa6.29□□□□□ -1.4
SS18-207ENST00000577636 PDE6GP18545 87 aa6.29□□□□□ -1.4
SS18-207ENST00000577636 GAGE2AQ6NT46 116 aa6.29□□□□□ -1.4
SS18-207ENST00000577636 DEFB105AQ8NG35 78 aa6.29□□□□□ -1.4
SS18-207ENST00000577636 DSCR8Q96T75 97 aa6.29□□□□□ -1.4
SS18-207ENST00000577636 C14orf132Q9NPU4 83 aa6.29□□□□□ -1.4
SS18-207ENST00000577636 PLAC8Q9NZF1 115 aa6.29□□□□□ -1.4
SS18-207ENST00000577636 BCE1O60756 84 aa6.28□□□□□ -1.4
SS18-207ENST00000577636 NDUFV3P56181 108 aaKnown RBP6.28□□□□□ -1.4
SS18-207ENST00000577636 OBSCN-AS1Q96MR7 158 aa6.28□□□□□ -1.4
SS18-207ENST00000577636 HIGD2AQ9BW72 106 aa6.28□□□□□ -1.4
SS18-207ENST00000577636 A0A1B0GV72 72 aa6.27□□□□□ -1.41
SS18-207ENST00000577636 PRLHP81277 87 aa6.27□□□□□ -1.41
SS18-207ENST00000577636 Q9BRP9 147 aa6.27□□□□□ -1.41
SS18-207ENST00000577636 F8WEM9 126 aa6.26□□□□□ -1.41
SS18-207ENST00000577636 RNF213Q63HN8 5207 aa6.26□□□□□ -1.41
SS18-207ENST00000577636 SMCR5Q8TEV8 140 aa6.25□□□□□ -1.41
SS18-207ENST00000577636 LRP2P98164 4655 aa6.25□□□□□ -1.41
SS18-207ENST00000577636 IGLV5-48A0A075B6I7 105 aa6.24□□□□□ -1.41
SS18-207ENST00000577636 LOC110117498A0A087WWA1 95 aa6.24□□□□□ -1.41
SS18-207ENST00000577636 CCKP06307 115 aa6.24□□□□□ -1.41
SS18-207ENST00000577636 SIGMAR1Q99720 223 aa6.23□□□□□ -1.41
SS18-207ENST00000577636 ZNF706Q9Y5V0 76 aaPredicted RBP6.23□□□□□ -1.41
SS18-207ENST00000577636 ERC2-IT1O76042 136 aa6.22□□□□□ -1.41
SS18-207ENST00000577636 C1orf137Q5JT78 98 aa6.22□□□□□ -1.41
SS18-207ENST00000577636 KRTAP11-1Q8IUC1 163 aa6.22□□□□□ -1.41
SS18-207ENST00000577636 Q8N377 158 aa6.22□□□□□ -1.41
SS18-207ENST00000577636 ST20-AS1Q8NBB2 130 aa6.22□□□□□ -1.41
SS18-207ENST00000577636 TNXBP22105 4242 aa6.21□□□□□ -1.41
SS18-207ENST00000577636 PSORS1C2Q9UIG4 136 aa6.21□□□□□ -1.42
SS18-207ENST00000577636 Q6ZQT0 140 aa6.2□□□□□ -1.42
SS18-207ENST00000577636 CDIP1Q9H305 208 aa6.2□□□□□ -1.42
SS18-207ENST00000577636 LINC01547P58512 204 aaPredicted RBP6.19□□□□□ -1.42
SS18-207ENST00000577636 UBL5Q9BZL1 73 aa6.19□□□□□ -1.42
SS18-207ENST00000577636 TRBV7-4A0A0J9YYF1 115 aa6.18□□□□□ -1.42
SS18-207ENST00000577636 ZNF861PO60384 105 aa6.18□□□□□ -1.42
SS18-207ENST00000577636 LINC00643Q86TS7 51 aa6.18□□□□□ -1.42
SS18-207ENST00000577636 KRTAP13-1Q8IUC0 172 aa6.17□□□□□ -1.42
SS18-207ENST00000577636 A0A1B0GW54 56 aa6.16□□□□□ -1.42
SS18-207ENST00000577636 IGLV7-43P04211 117 aa6.16□□□□□ -1.42
SS18-207ENST00000577636 SPRR1BP22528 89 aa6.16□□□□□ -1.42
SS18-207ENST00000577636 C3orf22Q8N5N4 141 aa6.16□□□□□ -1.42
SS18-207ENST00000577636 Q6JHZ5 121 aa6.15□□□□□ -1.42
SS18-207ENST00000577636 LINC00846Q9NV44 126 aa6.15□□□□□ -1.42
SS18-207ENST00000577636 KRTAP10-8P60410 259 aa6.13□□□□□ -1.43
SS18-207ENST00000577636 ATP5EP2Q5VTU8 51 aa6.13□□□□□ -1.43
SS18-207ENST00000577636 SMIM29Q86T20 159 aa6.13□□□□□ -1.43
SS18-207ENST00000577636 SPRR4Q96PI1 79 aa6.13□□□□□ -1.43
SS18-207ENST00000577636 IGLV8-61A0A075B6I0 122 aa6.12□□□□□ -1.43
SS18-207ENST00000577636 MT-ATP8P03928 68 aa6.12□□□□□ -1.43
SS18-207ENST00000577636 SPINK6Q6UWN8 80 aa6.11□□□□□ -1.43
SS18-207ENST00000577636 Q8NBF4 154 aa6.11□□□□□ -1.43
SS18-207ENST00000577636 SCGB1A1P11684 91 aa6.1□□□□□ -1.43
SS18-207ENST00000577636 NREPQ16612 68 aa6.1□□□□□ -1.43
SS18-207ENST00000577636 LINC00483Q53H64 154 aa6.1□□□□□ -1.43
SS18-207ENST00000577636 C9orf153Q5TBE3 101 aa6.1□□□□□ -1.43
SS18-207ENST00000577636 IMUPQ9GZP8 106 aa6.1□□□□□ -1.43
SS18-207ENST00000577636 IGLV9-49A0A0B4J1Y8 123 aa6.08□□□□□ -1.44
SS18-207ENST00000577636 TRBV7-7A0A0K0K1E9 115 aa6.08□□□□□ -1.44
SS18-207ENST00000577636 Q6Q795 121 aa6.08□□□□□ -1.44
SS18-207ENST00000577636 IGFL1Q6UW32 110 aa6.08□□□□□ -1.44
SS18-207ENST00000577636 Q6ZVQ6 151 aa6.08□□□□□ -1.44
SS18-207ENST00000577636 CRYGAP11844 174 aa6.07□□□□□ -1.44
SS18-207ENST00000577636 LPAP08519 4548 aa6.07□□□□□ -1.44
SS18-207ENST00000577636 IGKV3D-7A0A0C4DH55 119 aa6.06□□□□□ -1.44
SS18-207ENST00000577636 A0A1W2PNM2 257 aa6.06□□□□□ -1.44
SS18-207ENST00000577636 CXCL6P80162 114 aa6.05□□□□□ -1.44
SS18-207ENST00000577636 HIST1H4AP62805 103 aaKnown RBP6.04□□□□□ -1.44
SS18-207ENST00000577636 BPY2O14599 106 aa6.03□□□□□ -1.44
SS18-207ENST00000577636 MOBPQ13875 183 aa6.03□□□□□ -1.44
SS18-207ENST00000577636 KRTAP9-2Q9BYQ4 174 aa6.03□□□□□ -1.44
SS18-207ENST00000577636 A0A087WSZ3 146 aa6.02□□□□□ -1.45
SS18-207ENST00000577636 FAM229BQ4G0N7 80 aa6.02□□□□□ -1.45
SS18-207ENST00000577636 SS18L2Q9UHA2 77 aa6.02□□□□□ -1.45
SS18-207ENST00000577636 SSBP3-AS1Q7Z2R9 100 aa6.01□□□□□ -1.45
SS18-207ENST00000577636 ANAPC11Q9NYG5 84 aa6.01□□□□□ -1.45
SS18-207ENST00000577636 PRR26Q8N8Z3 221 aa6□□□□□ -1.45
SS18-207ENST00000577636 A0A0G2JQZ4 141 aa5.99□□□□□ -1.45
SS18-207ENST00000577636 PCP4P48539 62 aa5.99□□□□□ -1.45
SS18-207ENST00000577636 PRR4Q16378 134 aa5.99□□□□□ -1.45
SS18-207ENST00000577636 FAM236AA0A1B0GUQ0 79 aa5.98□□□□□ -1.45
SS18-207ENST00000577636 FAM236BA0A1B0GV22 79 aa5.98□□□□□ -1.45
SS18-207ENST00000577636 CD164Q04900 197 aa5.97□□□□□ -1.45
SS18-207ENST00000577636 A0A0U1RQV1 116 aa5.96□□□□□ -1.46
SS18-207ENST00000577636 J3KT08 172 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms