RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	TRAV22	A0A0B4J277	110 aa		7.44	□□□□□ -1.22
CLN3-238	ENST00000569430	KRTAP1-1	Q07627	177 aa		7.43	□□□□□ -1.22
CLN3-238	ENST00000569430	IGHV6-1	A0A0B4J1U7	121 aa		7.42	□□□□□ -1.22
CLN3-238	ENST00000569430	TENM3	Q9P273	2699 aa		7.42	□□□□□ -1.22
CLN3-238	ENST00000569430	IGLV1-50	A0A075B6I6	118 aa		7.42	□□□□□ -1.22
CLN3-238	ENST00000569430		A0A1B0GW54	56 aa		7.41	□□□□□ -1.22
CLN3-238	ENST00000569430		F8WDY8	70 aa		7.41	□□□□□ -1.22
CLN3-238	ENST00000569430	SPAG11A	Q6PDA7	123 aa		7.41	□□□□□ -1.22
CLN3-238	ENST00000569430	LIMD2	Q9BT23	127 aa		7.4	□□□□□ -1.22
CLN3-238	ENST00000569430	IGFL1	Q6UW32	110 aa		7.4	□□□□□ -1.23
CLN3-238	ENST00000569430	CASC10	Q5T4H9	136 aa		7.39	□□□□□ -1.23
CLN3-238	ENST00000569430	IGLV5-48	A0A075B6I7	105 aa		7.39	□□□□□ -1.23
CLN3-238	ENST00000569430	DSCR10	P59022	87 aa		7.38	□□□□□ -1.23
CLN3-238	ENST00000569430	CHTF8	P0CG12	524 aa		7.37	□□□□□ -1.23
CLN3-238	ENST00000569430	C14orf177	Q52M58	125 aa		7.37	□□□□□ -1.23
CLN3-238	ENST00000569430		H3BNG1	76 aa		7.37	□□□□□ -1.23
CLN3-238	ENST00000569430	PHF5A	Q7RTV0	110 aa	Known RBP	7.37	□□□□□ -1.23
CLN3-238	ENST00000569430	LINC00588	Q9Y4M8	146 aa		7.37	□□□□□ -1.23
CLN3-238	ENST00000569430	ANK3	Q12955	4377 aa	Known RBP	7.36	□□□□□ -1.23
CLN3-238	ENST00000569430	DNAH10OS	P0CZ25	163 aa		7.32	□□□□□ -1.24
CLN3-238	ENST00000569430	RETNLB	Q9BQ08	111 aa		7.32	□□□□□ -1.24
CLN3-238	ENST00000569430	KMT2B	Q9UMN6	2715 aa	Predicted RBP	7.32	□□□□□ -1.24
CLN3-238	ENST00000569430	COA5	Q86WW8	74 aa		7.31	□□□□□ -1.24
CLN3-238	ENST00000569430	PRR15	Q8IV56	129 aa		7.3	□□□□□ -1.24
CLN3-238	ENST00000569430		A8MWP4	228 aa		7.29	□□□□□ -1.24
CLN3-238	ENST00000569430		Q1T7F1	81 aa		7.29	□□□□□ -1.24
CLN3-238	ENST00000569430	KRTAP10-11	P60412	298 aa		7.27	□□□□□ -1.24
CLN3-238	ENST00000569430	SPRR4	Q96PI1	79 aa		7.27	□□□□□ -1.24
CLN3-238	ENST00000569430		H3BPC8	53 aa		7.27	□□□□□ -1.25
CLN3-238	ENST00000569430	C16orf90	A8MZG2	172 aa		7.27	□□□□□ -1.25
CLN3-238	ENST00000569430	CIRBP-AS1	Q8TBR5	109 aa		7.27	□□□□□ -1.25
CLN3-238	ENST00000569430	TENM2	Q9NT68	2774 aa		7.26	□□□□□ -1.25
CLN3-238	ENST00000569430	TLX1NB	P0CAT3	122 aa		7.25	□□□□□ -1.25
CLN3-238	ENST00000569430	MOBP	Q13875	183 aa		7.25	□□□□□ -1.25
CLN3-238	ENST00000569430	CSMD3	Q7Z407	3707 aa		7.24	□□□□□ -1.25
CLN3-238	ENST00000569430	PLA2G2D	Q9UNK4	145 aa		7.24	□□□□□ -1.25
CLN3-238	ENST00000569430	KRTAP26-1	Q6PEX3	210 aa		7.23	□□□□□ -1.25
CLN3-238	ENST00000569430	STAB2	Q8WWQ8	2551 aa		7.23	□□□□□ -1.25
CLN3-238	ENST00000569430	CYP4F30P	Q9H0H9	118 aa		7.22	□□□□□ -1.25
CLN3-238	ENST00000569430	TP53AIP1	Q9HCN2	124 aa		7.22	□□□□□ -1.25
CLN3-238	ENST00000569430	LOC101927531	A0A1B0GV80	90 aa		7.22	□□□□□ -1.25
CLN3-238	ENST00000569430	ZNF706	Q9Y5V0	76 aa	Predicted RBP	7.21	□□□□□ -1.25
CLN3-238	ENST00000569430	CD164	Q04900	197 aa		7.19	□□□□□ -1.26
CLN3-238	ENST00000569430		Q8N9P0	234 aa	Predicted RBP	7.19	□□□□□ -1.26
CLN3-238	ENST00000569430	KRTAP24-1	Q3LI83	254 aa		7.18	□□□□□ -1.26
CLN3-238	ENST00000569430	ATP11AUN	Q6ZP68	121 aa		7.18	□□□□□ -1.26
CLN3-238	ENST00000569430	ANAPC11	Q9NYG5	84 aa		7.18	□□□□□ -1.26
CLN3-238	ENST00000569430	SPRR1A	P35321	89 aa		7.18	□□□□□ -1.26
CLN3-238	ENST00000569430	SPINK1	P00995	79 aa		7.17	□□□□□ -1.26
CLN3-238	ENST00000569430		Q5VV11	94 aa		7.17	□□□□□ -1.26
CLN3-238	ENST00000569430	SPANXA2-OT1	Q8N9U9	137 aa		7.17	□□□□□ -1.26
CLN3-238	ENST00000569430	IGLV5-37	A0A075B6J1	123 aa		7.17	□□□□□ -1.26
CLN3-238	ENST00000569430	KTN1-AS1	Q86SY8	53 aa		7.17	□□□□□ -1.26
CLN3-238	ENST00000569430	CNBP	P62633	177 aa	Known RBP	7.16	□□□□□ -1.26
CLN3-238	ENST00000569430	TNP2	Q05952	138 aa		7.16	□□□□□ -1.26
CLN3-238	ENST00000569430	C8orf17	Q9NRJ1	99 aa		7.16	□□□□□ -1.26
CLN3-238	ENST00000569430	C4orf48	Q5BLP8	95 aa		7.15	□□□□□ -1.26
CLN3-238	ENST00000569430	PRR26	Q8N8Z3	221 aa		7.14	□□□□□ -1.27
CLN3-238	ENST00000569430		A8MU10	97 aa		7.14	□□□□□ -1.27
CLN3-238	ENST00000569430	MRPL34	Q9BQ48	92 aa	Known RBP	7.14	□□□□□ -1.27
CLN3-238	ENST00000569430		A0A1B0GU69	56 aa		7.13	□□□□□ -1.27
CLN3-238	ENST00000569430	IGLV8-61	A0A075B6I0	122 aa		7.13	□□□□□ -1.27
CLN3-238	ENST00000569430	IGKV2D-30	A0A075B6S6	120 aa		7.13	□□□□□ -1.27
CLN3-238	ENST00000569430	IGKV2-30	P06310	120 aa		7.13	□□□□□ -1.27
CLN3-238	ENST00000569430	ZCCHC13	Q8WW36	166 aa	Known RBP	7.13	□□□□□ -1.27
CLN3-238	ENST00000569430	ACYP2	P14621	99 aa		7.12	□□□□□ -1.27
CLN3-238	ENST00000569430	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	7.12	□□□□□ -1.27
CLN3-238	ENST00000569430	ANK2	Q01484	3957 aa		7.1	□□□□□ -1.27
CLN3-238	ENST00000569430	SRRM2	Q9UQ35	2752 aa	Known RBP	7.1	□□□□□ -1.27
CLN3-238	ENST00000569430		A0A1B0GVX0	72 aa		7.09	□□□□□ -1.27
CLN3-238	ENST00000569430	RBM12B-AS1	Q9P1G2	102 aa		7.09	□□□□□ -1.27
CLN3-238	ENST00000569430	MDFI	Q99750	246 aa		7.08	□□□□□ -1.28
CLN3-238	ENST00000569430	IGLV7-46	A0A075B6I9	117 aa		7.08	□□□□□ -1.28
CLN3-238	ENST00000569430	CDC42SE1	Q9NRR8	79 aa		7.08	□□□□□ -1.28
CLN3-238	ENST00000569430	MMP24-AS1	A0A0U1RRL7	71 aa		7.07	□□□□□ -1.28
CLN3-238	ENST00000569430	C7orf65	Q6ZTY9	151 aa		7.07	□□□□□ -1.28
CLN3-238	ENST00000569430	C9orf163	Q8N9P6	203 aa		7.07	□□□□□ -1.28
CLN3-238	ENST00000569430	LINC00472	Q9H8W2	130 aa		7.06	□□□□□ -1.28
CLN3-238	ENST00000569430	IGLV5-52	A0A0A0MRZ9	124 aa		7.06	□□□□□ -1.28
CLN3-238	ENST00000569430	COL7A1	Q02388	2944 aa		7.05	□□□□□ -1.28
CLN3-238	ENST00000569430	NBDY	A0A0U1RRE5	68 aa		7.05	□□□□□ -1.28
CLN3-238	ENST00000569430		Q75L30	129 aa		7.05	□□□□□ -1.28
CLN3-238	ENST00000569430	KRTAP7-1	Q8IUC3	87 aa		7.05	□□□□□ -1.28
CLN3-238	ENST00000569430		K7EIL1	84 aa		7.04	□□□□□ -1.28
CLN3-238	ENST00000569430	LCE6A	A0A183	80 aa		7.02	□□□□□ -1.28
CLN3-238	ENST00000569430	KRTAP29-1	A8MX34	341 aa	Predicted RBP	7.02	□□□□□ -1.28
CLN3-238	ENST00000569430	SPINK7	P58062	85 aa		7.02	□□□□□ -1.28
CLN3-238	ENST00000569430	LY6G6C	O95867	125 aa		7.02	□□□□□ -1.29
CLN3-238	ENST00000569430	SPACA4	Q8TDM5	124 aa		7.01	□□□□□ -1.29
CLN3-238	ENST00000569430	LCA10	Q71F78	164 aa		7.01	□□□□□ -1.29
CLN3-238	ENST00000569430	KRTAP1-5	Q9BYS1	174 aa		7.01	□□□□□ -1.29
CLN3-238	ENST00000569430	LINC00313	P59037	77 aa		7.01	□□□□□ -1.29
CLN3-238	ENST00000569430	NUPR2	A6NF83	97 aa		7	□□□□□ -1.29
CLN3-238	ENST00000569430	C8orf87	E5RJ46	101 aa		7	□□□□□ -1.29
CLN3-238	ENST00000569430	HRES1	P13985	223 aa		7	□□□□□ -1.29
CLN3-238	ENST00000569430	RTL8C	O15255	209 aa		6.99	□□□□□ -1.29
CLN3-238	ENST00000569430	PRAC1	Q96KF2	57 aa		6.99	□□□□□ -1.29
CLN3-238	ENST00000569430	PSORS1C2	Q9UIG4	136 aa		6.99	□□□□□ -1.29
CLN3-238	ENST00000569430	LINC01558	Q9Y6Z2	57 aa		6.98	□□□□□ -1.29
CLN3-238	ENST00000569430	DMBT1	Q9UGM3	2413 aa	Predicted RBP	6.97	□□□□□ -1.29

Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms