RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 F8WEM9 126 aa12.56□□□□□ -0.4
CLN3-230ENST00000568076 DPH3Q96FX2 82 aa12.56□□□□□ -0.4
CLN3-230ENST00000568076 BPY2O14599 106 aa12.56□□□□□ -0.4
CLN3-230ENST00000568076 IGKV4-1P06312 121 aa12.56□□□□□ -0.4
CLN3-230ENST00000568076 IGFL1Q6UW32 110 aa12.56□□□□□ -0.4
CLN3-230ENST00000568076 SRRM2Q9UQ35 2752 aaKnown RBP12.55□□□□□ -0.4
CLN3-230ENST00000568076 HECTD4Q9Y4D8 3996 aa12.55□□□□□ -0.4
CLN3-230ENST00000568076 BCE1O60756 84 aa12.54□□□□□ -0.4
CLN3-230ENST00000568076 IGLV8-61A0A075B6I0 122 aa12.54□□□□□ -0.4
CLN3-230ENST00000568076 UBE2AP49459 152 aa12.53□□□□□ -0.4
CLN3-230ENST00000568076 DNAH17Q9UFH2 4485 aa12.53□□□□□ -0.4
CLN3-230ENST00000568076 RTL8CO15255 209 aa12.52□□□□□ -0.4
CLN3-230ENST00000568076 FBN3Q75N90 2809 aa12.52□□□□□ -0.4
CLN3-230ENST00000568076 KRTAP13-1Q8IUC0 172 aa12.52□□□□□ -0.41
CLN3-230ENST00000568076 SPRR1BP22528 89 aa12.51□□□□□ -0.41
CLN3-230ENST00000568076 TRAV7A0A075B6U4 112 aa12.48□□□□□ -0.41
CLN3-230ENST00000568076 C1orf134Q5TEV5 83 aa12.46□□□□□ -0.41
CLN3-230ENST00000568076 TGP01266 2768 aa12.45□□□□□ -0.42
CLN3-230ENST00000568076 SMIM20Q8N5G0 67 aa12.45□□□□□ -0.42
CLN3-230ENST00000568076 LY6G6CO95867 125 aa12.44□□□□□ -0.42
CLN3-230ENST00000568076 DSCR10P59022 87 aa12.43□□□□□ -0.42
CLN3-230ENST00000568076 C20orf197Q8N268 126 aa12.42□□□□□ -0.42
CLN3-230ENST00000568076 A0A087WSZ3 146 aa12.4□□□□□ -0.42
CLN3-230ENST00000568076 IGLV5-52A0A0A0MRZ9 124 aa12.4□□□□□ -0.42
CLN3-230ENST00000568076 PLAC8Q9NZF1 115 aa12.39□□□□□ -0.43
CLN3-230ENST00000568076 DNAH8Q96JB1 4490 aa12.39□□□□□ -0.43
CLN3-230ENST00000568076 K7EQZ3 153 aa12.37□□□□□ -0.43
CLN3-230ENST00000568076 PSORS1C2Q9UIG4 136 aa12.37□□□□□ -0.43
CLN3-230ENST00000568076 DEFB116Q30KQ4 102 aa12.34□□□□□ -0.43
CLN3-230ENST00000568076 DNAH6Q9C0G6 4158 aa12.34□□□□□ -0.43
CLN3-230ENST00000568076 TMEM258P61165 79 aa12.33□□□□□ -0.44
CLN3-230ENST00000568076 OCR1Q9BZK8 76 aa12.33□□□□□ -0.44
CLN3-230ENST00000568076 KLKP1Q107X0 134 aa12.31□□□□□ -0.44
CLN3-230ENST00000568076 KRTAP21-3Q3LHN1 58 aa12.3□□□□□ -0.44
CLN3-230ENST00000568076 WWC2-AS2Q96NR7 200 aa12.3□□□□□ -0.44
CLN3-230ENST00000568076 SNURFQ9Y675 71 aa12.3□□□□□ -0.44
CLN3-230ENST00000568076 LINC00483Q53H64 154 aa12.29□□□□□ -0.44
CLN3-230ENST00000568076 DNAH11Q96DT5 4516 aa12.28□□□□□ -0.44
CLN3-230ENST00000568076 FRAS1Q86XX4 4008 aa12.27□□□□□ -0.45
CLN3-230ENST00000568076 IGLV9-49A0A0B4J1Y8 123 aa12.27□□□□□ -0.45
CLN3-230ENST00000568076 H7BZZ5 65 aa12.27□□□□□ -0.45
CLN3-230ENST00000568076 DNAH5Q8TE73 4624 aa12.27□□□□□ -0.45
CLN3-230ENST00000568076 KRTAP10-2P60368 255 aa12.26□□□□□ -0.45
CLN3-230ENST00000568076 ZNF861PO60384 105 aa12.25□□□□□ -0.45
CLN3-230ENST00000568076 ALMS1Q8TCU4 4167 aa12.25□□□□□ -0.45
CLN3-230ENST00000568076 RPL37AP61513 92 aaKnown RBP12.24□□□□□ -0.45
CLN3-230ENST00000568076 HYDINQ4G0P3 5121 aa12.24□□□□□ -0.45
CLN3-230ENST00000568076 TMEM254Q8TBM7 123 aa12.23□□□□□ -0.45
CLN3-230ENST00000568076 LINC00472Q9H8W2 130 aa12.23□□□□□ -0.45
CLN3-230ENST00000568076 FAM30AQ9NZY2 134 aa12.23□□□□□ -0.45
CLN3-230ENST00000568076 ZNF706Q9Y5V0 76 aaPredicted RBP12.22□□□□□ -0.45
CLN3-230ENST00000568076 HCG22E2RYF7 251 aa12.21□□□□□ -0.45
CLN3-230ENST00000568076 ANAPC11Q9NYG5 84 aa12.21□□□□□ -0.45
CLN3-230ENST00000568076 CIRBP-AS1Q8TBR5 109 aa12.17□□□□□ -0.46
CLN3-230ENST00000568076 A0A0U1RQV1 116 aa12.16□□□□□ -0.46
CLN3-230ENST00000568076 IGLV7-43P04211 117 aa12.16□□□□□ -0.46
CLN3-230ENST00000568076 PKD1P98161 4303 aa12.16□□□□□ -0.46
CLN3-230ENST00000568076 FAT2Q9NYQ8 4349 aa12.15□□□□□ -0.46
CLN3-230ENST00000568076 J3KT08 172 aa12.14□□□□□ -0.47
CLN3-230ENST00000568076 RPS28P62857 69 aaKnown RBP12.14□□□□□ -0.47
CLN3-230ENST00000568076 MOBPQ13875 183 aa12.14□□□□□ -0.47
CLN3-230ENST00000568076 LCE6AA0A183 80 aa12.14□□□□□ -0.47
CLN3-230ENST00000568076 WFDC13Q8IUB5 93 aa12.14□□□□□ -0.47
CLN3-230ENST00000568076 PRR15Q8IV56 129 aa12.14□□□□□ -0.47
CLN3-230ENST00000568076 FAM236DA0A1B0GTK5 79 aa12.13□□□□□ -0.47
CLN3-230ENST00000568076 A8MWP4 228 aa12.13□□□□□ -0.47
CLN3-230ENST00000568076 FAM236CP0DP71 79 aa12.13□□□□□ -0.47
CLN3-230ENST00000568076 HRCT1Q6UXD1 115 aa12.13□□□□□ -0.47
CLN3-230ENST00000568076 KRTAP29-1A8MX34 341 aaPredicted RBP12.11□□□□□ -0.47
CLN3-230ENST00000568076 NDUFC1O43677 76 aa12.11□□□□□ -0.47
CLN3-230ENST00000568076 Q96NJ1 140 aa12.11□□□□□ -0.47
CLN3-230ENST00000568076 OXTP01178 125 aa12.1□□□□□ -0.47
CLN3-230ENST00000568076 KRTAP10-1P60331 282 aa12.1□□□□□ -0.47
CLN3-230ENST00000568076 Q6ZSA8 131 aa12.09□□□□□ -0.47
CLN3-230ENST00000568076 CASC2Q6XLA1 102 aa12.05□□□□□ -0.48
CLN3-230ENST00000568076 LRP1BQ9NZR2 4599 aa12.05□□□□□ -0.48
CLN3-230ENST00000568076 MMP24-AS1A0A0U1RRL7 71 aa12.01□□□□□ -0.49
CLN3-230ENST00000568076 C5orf47Q569G3 176 aa12.01□□□□□ -0.49
CLN3-230ENST00000568076 ZCCHC13Q8WW36 166 aaKnown RBP12.01□□□□□ -0.49
CLN3-230ENST00000568076 NDUFB1O75438 58 aa11.98□□□□□ -0.49
CLN3-230ENST00000568076 SERP1Q9Y6X1 66 aa11.96□□□□□ -0.5
CLN3-230ENST00000568076 SACSQ9NZJ4 4579 aa11.94□□□□□ -0.5
CLN3-230ENST00000568076 ATP5EP56381 51 aaPredicted RBP11.94□□□□□ -0.5
CLN3-230ENST00000568076 hDV103S1A0JD37 113 aa11.92□□□□□ -0.5
CLN3-230ENST00000568076 ASB16-AS1Q495Z4 193 aa11.92□□□□□ -0.5
CLN3-230ENST00000568076 A0A087X002 238 aa11.89□□□□□ -0.51
CLN3-230ENST00000568076 SSBP3-AS1Q7Z2R9 100 aa11.89□□□□□ -0.51
CLN3-230ENST00000568076 C8orf17Q9NRJ1 99 aa11.89□□□□□ -0.51
CLN3-230ENST00000568076 A0A1B0GVX0 72 aa11.88□□□□□ -0.51
CLN3-230ENST00000568076 IGHV6-1A0A0B4J1U7 121 aa11.87□□□□□ -0.51
CLN3-230ENST00000568076 MP68P56378 58 aa11.87□□□□□ -0.51
CLN3-230ENST00000568076 CD164Q04900 197 aa11.87□□□□□ -0.51
CLN3-230ENST00000568076 KRTAP13-2Q52LG2 175 aa11.87□□□□□ -0.51
CLN3-230ENST00000568076 H0Y9P7 68 aa11.85□□□□□ -0.51
CLN3-230ENST00000568076 LINC00208Q96KT6 92 aa11.85□□□□□ -0.51
CLN3-230ENST00000568076 CDK2AP2O75956 126 aa11.83□□□□□ -0.52
CLN3-230ENST00000568076 NOTCH2NLQ7Z3S9 236 aa11.83□□□□□ -0.52
CLN3-230ENST00000568076 VPS13BQ7Z7G8 4022 aa11.83□□□□□ -0.52
CLN3-230ENST00000568076 SPINK6Q6UWN8 80 aa11.82□□□□□ -0.52
CLN3-230ENST00000568076 TRAV22A0A0B4J277 110 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms