RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 LOC110117498A0A087WWA1 95 aa5.55□□□□□ -1.52
VPS39-207ENST00000563692 A0A1B0GV72 72 aa5.55□□□□□ -1.52
VPS39-207ENST00000563692 IGLV5-48A0A075B6I7 105 aa5.54□□□□□ -1.52
VPS39-207ENST00000563692 PRLHP81277 87 aa5.54□□□□□ -1.52
VPS39-207ENST00000563692 SCXQ7RTU7 201 aa5.54□□□□□ -1.52
VPS39-207ENST00000563692 Q8N377 158 aa5.54□□□□□ -1.52
VPS39-207ENST00000563692 HIGD2AQ9BW72 106 aa5.54□□□□□ -1.52
VPS39-207ENST00000563692 CDIP1Q9H305 208 aa5.54□□□□□ -1.52
VPS39-207ENST00000563692 ABCA13Q86UQ4 5058 aa5.54□□□□□ -1.52
VPS39-207ENST00000563692 ERC2-IT1O76042 136 aa5.53□□□□□ -1.52
VPS39-207ENST00000563692 F8WEM9 126 aa5.52□□□□□ -1.53
VPS39-207ENST00000563692 LINC01547P58512 204 aaPredicted RBP5.52□□□□□ -1.53
VPS39-207ENST00000563692 KRTAP11-1Q8IUC1 163 aa5.52□□□□□ -1.53
VPS39-207ENST00000563692 ST20-AS1Q8NBB2 130 aa5.52□□□□□ -1.53
VPS39-207ENST00000563692 FLG2Q5D862 2391 aaPredicted RBP5.51□□□□□ -1.53
VPS39-207ENST00000563692 DMBT1Q9UGM3 2413 aaPredicted RBP5.51□□□□□ -1.53
VPS39-207ENST00000563692 J3QL48 77 aa5.51□□□□□ -1.53
VPS39-207ENST00000563692 Q6ZQT0 140 aa5.51□□□□□ -1.53
VPS39-207ENST00000563692 CIRBP-AS1Q8TBR5 109 aa5.51□□□□□ -1.53
VPS39-207ENST00000563692 TRBV7-4A0A0J9YYF1 115 aa5.5□□□□□ -1.53
VPS39-207ENST00000563692 C1orf137Q5JT78 98 aa5.5□□□□□ -1.53
VPS39-207ENST00000563692 LINC00643Q86TS7 51 aa5.5□□□□□ -1.53
VPS39-207ENST00000563692 PSORS1C2Q9UIG4 136 aa5.5□□□□□ -1.53
VPS39-207ENST00000563692 ZNF706Q9Y5V0 76 aaPredicted RBP5.5□□□□□ -1.53
VPS39-207ENST00000563692 UBL5Q9BZL1 73 aa5.49□□□□□ -1.53
VPS39-207ENST00000563692 A0A1B0GW54 56 aa5.48□□□□□ -1.53
VPS39-207ENST00000563692 ZNF861PO60384 105 aa5.48□□□□□ -1.53
VPS39-207ENST00000563692 SPRR1BP22528 89 aa5.48□□□□□ -1.53
VPS39-207ENST00000563692 RPL37AP61513 92 aaKnown RBP5.48□□□□□ -1.53
VPS39-207ENST00000563692 KRTAP13-1Q8IUC0 172 aa5.48□□□□□ -1.53
VPS39-207ENST00000563692 SMIM29Q86T20 159 aa5.47□□□□□ -1.53
VPS39-207ENST00000563692 LINC00846Q9NV44 126 aa5.47□□□□□ -1.53
VPS39-207ENST00000563692 FAT1Q14517 4588 aa5.47□□□□□ -1.53
VPS39-207ENST00000563692 MT-ATP8P03928 68 aa5.46□□□□□ -1.54
VPS39-207ENST00000563692 C3orf22Q8N5N4 141 aa5.46□□□□□ -1.54
VPS39-207ENST00000563692 SRRM2Q9UQ35 2752 aaKnown RBP5.45□□□□□ -1.54
VPS39-207ENST00000563692 IGLV7-43P04211 117 aa5.45□□□□□ -1.54
VPS39-207ENST00000563692 SCGB1A1P11684 91 aa5.45□□□□□ -1.54
VPS39-207ENST00000563692 IMUPQ9GZP8 106 aa5.45□□□□□ -1.54
VPS39-207ENST00000563692 IGLV8-61A0A075B6I0 122 aa5.44□□□□□ -1.54
VPS39-207ENST00000563692 KRTAP29-1A8MX34 341 aaPredicted RBP5.44□□□□□ -1.54
VPS39-207ENST00000563692 Q6JHZ5 121 aa5.44□□□□□ -1.54
VPS39-207ENST00000563692 ATP5EP2Q5VTU8 51 aa5.43□□□□□ -1.54
VPS39-207ENST00000563692 Q6Q795 121 aa5.43□□□□□ -1.54
VPS39-207ENST00000563692 SPRR4Q96PI1 79 aa5.43□□□□□ -1.54
VPS39-207ENST00000563692 VPS13BQ7Z7G8 4022 aa5.43□□□□□ -1.54
VPS39-207ENST00000563692 OXTP01178 125 aa5.42□□□□□ -1.54
VPS39-207ENST00000563692 NREPQ16612 68 aa5.42□□□□□ -1.54
VPS39-207ENST00000563692 LINC00483Q53H64 154 aa5.42□□□□□ -1.54
VPS39-207ENST00000563692 TRBV7-7A0A0K0K1E9 115 aa5.41□□□□□ -1.54
VPS39-207ENST00000563692 Q8NBF4 154 aa5.41□□□□□ -1.54
VPS39-207ENST00000563692 A0A1W2PNM2 257 aa5.4□□□□□ -1.54
VPS39-207ENST00000563692 CRYGAP11844 174 aa5.4□□□□□ -1.54
VPS39-207ENST00000563692 KRTAP10-4P60372 401 aaPredicted RBP5.4□□□□□ -1.54
VPS39-207ENST00000563692 IGFL1Q6UW32 110 aa5.4□□□□□ -1.54
VPS39-207ENST00000563692 Q6ZVQ6 151 aa5.4□□□□□ -1.54
VPS39-207ENST00000563692 MYCBP2O75592 4640 aa5.4□□□□□ -1.55
VPS39-207ENST00000563692 DNAH8Q96JB1 4490 aa5.39□□□□□ -1.55
VPS39-207ENST00000563692 IGKV3D-7A0A0C4DH55 119 aa5.39□□□□□ -1.55
VPS39-207ENST00000563692 CXCL6P80162 114 aa5.38□□□□□ -1.55
VPS39-207ENST00000563692 C9orf153Q5TBE3 101 aa5.38□□□□□ -1.55
VPS39-207ENST00000563692 IGLV9-49A0A0B4J1Y8 123 aa5.37□□□□□ -1.55
VPS39-207ENST00000563692 PCP4P48539 62 aa5.36□□□□□ -1.55
VPS39-207ENST00000563692 HIST1H4AP62805 103 aaKnown RBP5.36□□□□□ -1.55
VPS39-207ENST00000563692 BPY2O14599 106 aa5.35□□□□□ -1.55
VPS39-207ENST00000563692 HERC1Q15751 4861 aa5.34□□□□□ -1.55
VPS39-207ENST00000563692 SSBP3-AS1Q7Z2R9 100 aa5.34□□□□□ -1.55
VPS39-207ENST00000563692 A0A087WSZ3 146 aa5.33□□□□□ -1.56
VPS39-207ENST00000563692 FAM229BQ4G0N7 80 aa5.33□□□□□ -1.56
VPS39-207ENST00000563692 SPINK6Q6UWN8 80 aa5.33□□□□□ -1.56
VPS39-207ENST00000563692 A0A0G2JQZ4 141 aa5.32□□□□□ -1.56
VPS39-207ENST00000563692 MOBPQ13875 183 aa5.32□□□□□ -1.56
VPS39-207ENST00000563692 ANAPC11Q9NYG5 84 aa5.32□□□□□ -1.56
VPS39-207ENST00000563692 SS18L2Q9UHA2 77 aa5.31□□□□□ -1.56
VPS39-207ENST00000563692 FAM236AA0A1B0GUQ0 79 aa5.3□□□□□ -1.56
VPS39-207ENST00000563692 FAM236BA0A1B0GV22 79 aa5.3□□□□□ -1.56
VPS39-207ENST00000563692 ANAPC13Q9BS18 74 aa5.3□□□□□ -1.56
VPS39-207ENST00000563692 CD164Q04900 197 aa5.29□□□□□ -1.56
VPS39-207ENST00000563692 A0A087WVE0 104 aa5.28□□□□□ -1.56
VPS39-207ENST00000563692 J3KT08 172 aa5.28□□□□□ -1.56
VPS39-207ENST00000563692 ATOX1O00244 68 aa5.28□□□□□ -1.56
VPS39-207ENST00000563692 HRCT1Q6UXD1 115 aa5.28□□□□□ -1.56
VPS39-207ENST00000563692 MT1HL1P0DM35 61 aa5.27□□□□□ -1.57
VPS39-207ENST00000563692 LRP1Q07954 4544 aaKnown RBP5.26□□□□□ -1.57
VPS39-207ENST00000563692 NDUFB1O75438 58 aa5.25□□□□□ -1.57
VPS39-207ENST00000563692 C4orf48Q5BLP8 95 aa5.25□□□□□ -1.57
VPS39-207ENST00000563692 SMIM20Q8N5G0 67 aa5.25□□□□□ -1.57
VPS39-207ENST00000563692 LINC00472Q9H8W2 130 aa5.25□□□□□ -1.57
VPS39-207ENST00000563692 IGKV4-1P06312 121 aa5.24□□□□□ -1.57
VPS39-207ENST00000563692 KRTAP1-4P0C5Y4 121 aa5.24□□□□□ -1.57
VPS39-207ENST00000563692 DSCR10P59022 87 aa5.24□□□□□ -1.57
VPS39-207ENST00000563692 DEFB116Q30KQ4 102 aa5.24□□□□□ -1.57
VPS39-207ENST00000563692 TYMSOSQ8TAI1 123 aa5.24□□□□□ -1.57
VPS39-207ENST00000563692 A0A087X002 238 aa5.23□□□□□ -1.57
VPS39-207ENST00000563692 KRTAP13-2Q52LG2 175 aa5.23□□□□□ -1.57
VPS39-207ENST00000563692 Q8N9L7 120 aa5.23□□□□□ -1.57
VPS39-207ENST00000563692 A8MWP4 228 aa5.22□□□□□ -1.57
VPS39-207ENST00000563692 FAT3Q8TDW7 4589 aa5.21□□□□□ -1.57
VPS39-207ENST00000563692 K7EQZ3 153 aa5.21□□□□□ -1.58
VPS39-207ENST00000563692 ASB16-AS1Q495Z4 193 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms