RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 LINC00315P59091 139 aa2.98□□□□□ -1.93
VPS35P1-201ENST00000563400 M0R2N4 97 aa2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 LEPROTL1O95214 131 aa2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 KRTAP5-11Q6L8G4 156 aa2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 RPL39LQ96EH5 51 aaKnown RBP2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 PMCHL2Q9BQD1 86 aa2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 CDC42SE2Q9NRR3 84 aa2.96□□□□□ -1.94
VPS35P1-201ENST00000563400 NBEAL2Q6ZNJ1 2754 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 TRAV12-1A0A0B4J245 112 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 hADV29S1A0JD25 119 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 WFDC10BQ8IUB3 73 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 Q8N9L7 120 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 Q9BRP9 147 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 PRR34Q9NV39 138 aa2.95□□□□□ -1.94
VPS35P1-201ENST00000563400 PLNP26678 52 aa2.94□□□□□ -1.94
VPS35P1-201ENST00000563400 ATP5EP56381 51 aaPredicted RBP2.94□□□□□ -1.94
VPS35P1-201ENST00000563400 MOBPQ13875 183 aa2.94□□□□□ -1.94
VPS35P1-201ENST00000563400 PRO2289Q9P1D8 64 aa2.94□□□□□ -1.94
VPS35P1-201ENST00000563400 UBE2D4Q9Y2X8 147 aa2.94□□□□□ -1.94
VPS35P1-201ENST00000563400 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 IGKV3OR2-268A0A0C4DH90 116 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 LINC00959A0A1B0GUT2 108 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 IGKV2-29A2NJV5 120 aaPredicted RBP2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 LINC01546A6NGU7 62 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 K7EP34 96 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 SPTSSBQ8NFR3 76 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 C18orf32Q8TCD1 76 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 PSORS1C2Q9UIG4 136 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 NDUFA1O15239 70 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 CCKP06307 115 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 IFI27L1Q96BM0 104 aa2.93□□□□□ -1.94
VPS35P1-201ENST00000563400 TRBV30A0A0K0K1B3 111 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 NUPR1O60356 82 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 IGKCP01834 107 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 COX17Q14061 63 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 PMCHL1Q16048 86 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 KRTAP26-1Q6PEX3 210 aa2.92□□□□□ -1.94
VPS35P1-201ENST00000563400 A0A087WTM6 91 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 IGIPA6NJ69 53 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 F8VRH5 84 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 C9orf116Q5BN46 136 aaPredicted RBP2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 TMEM170BQ5T4T1 132 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 ENHOQ6UWT2 76 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 KRTAP11-1Q8IUC1 163 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 AMELXQ99217 191 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 STAB2Q8WWQ8 2551 aa2.91□□□□□ -1.94
VPS35P1-201ENST00000563400 IGLV4-60A0A075B6I1 120 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 MYMXA0A1B0GTQ4 84 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 CNBPP62633 177 aaKnown RBP2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 Q1T7F1 81 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 C2orf82Q6UX34 121 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 Q8IZM0 81 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 TENM3Q9P273 2699 aa2.9□□□□□ -1.95
VPS35P1-201ENST00000563400 GVQW2A0A096LPI5 108 aaPredicted RBP2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 A0A0G2JQZ4 141 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 RTL8CO15255 209 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 UBE2D1P51668 147 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 RPL39P62891 51 aaKnown RBP2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 SPAG11BQ08648 103 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 CLPSL2Q6UWE3 100 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 MRPL35Q9NZE8 188 aaKnown RBP2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 TOMM7Q9P0U1 55 aa2.89□□□□□ -1.95
VPS35P1-201ENST00000563400 TPRXLQ17RH7 258 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 LINC00167Q96N53 147 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 LRCOL1A6NCL2 159 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 IGLC3P0DOY3 106 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 CSAG1Q6PB30 78 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 COX7B2Q8TF08 81 aa2.88□□□□□ -1.95
VPS35P1-201ENST00000563400 TRAV13-2A0A0B4J235 113 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 HCG22E2RYF7 251 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 F8W1H4 67 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 SYS1-DBNDD2H3BUS1 97 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 KRTAP1-4P0C5Y4 121 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 KRTDAPP60985 99 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 C1orf137Q5JT78 98 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 PPDPFLQ8WWR9 84 aa2.87□□□□□ -1.95
VPS35P1-201ENST00000563400 TRBV7-7A0A0K0K1E9 115 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 TRBV10-3A0A0K0K1G6 114 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 Q6ZRN7 208 aaPredicted RBP2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 SPACA4Q8TDM5 124 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 DEFB104AQ8WTQ1 72 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 CYSTM1Q9H1C7 97 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 CDKN2A-AS1Q9UH64 79 aa2.86□□□□□ -1.95
VPS35P1-201ENST00000563400 ATOX1O00244 68 aa2.85□□□□□ -1.95
VPS35P1-201ENST00000563400 LINC00158P58513 81 aa2.85□□□□□ -1.95
VPS35P1-201ENST00000563400 LIMD2Q9BT23 127 aa2.85□□□□□ -1.95
VPS35P1-201ENST00000563400 ANAPC11Q9NYG5 84 aa2.85□□□□□ -1.95
VPS35P1-201ENST00000563400 COL7A1Q02388 2944 aa2.84□□□□□ -1.95
VPS35P1-201ENST00000563400 LCE1FQ5T754 118 aa2.84□□□□□ -1.95
VPS35P1-201ENST00000563400 DNAH3Q8TD57 4116 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 COX6A2Q02221 97 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 UQCR10Q9UDW1 63 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 CMYA5Q8N3K9 4069 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 A0A1W2PNN7 141 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 C3orf79P0CE67 100 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 CDC42SE1Q9NRR8 79 aa2.83□□□□□ -1.96
VPS35P1-201ENST00000563400 ZNF815PA8K554 130 aa2.82□□□□□ -1.96
VPS35P1-201ENST00000563400 KRTAP10-5P60370 271 aa2.82□□□□□ -1.96
VPS35P1-201ENST00000563400 DNAH9Q9NYC9 4486 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms